RNA–Protein interactions for RNA: ENST00000459860.1

SSNA1-202, Transcript of SS nuclear autoantigen 1, humanhuman

TSL 1 (best)

Gene SSNA1, Length 1,170 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSNA1-202ENST00000459860 NBPF4Q96M43 638 aa29.49■■■□□ 2.31
SSNA1-202ENST00000459860 BCL11BQ9C0K0 894 aaPredicted RBP29.49■■■□□ 2.31
SSNA1-202ENST00000459860 USHBP1Q8N6Y0 703 aa29.47■■■□□ 2.31
SSNA1-202ENST00000459860 PROM2Q8N271 834 aa29.45■■■□□ 2.31
SSNA1-202ENST00000459860 RAPGEF4Q8WZA2 1011 aa29.45■■■□□ 2.31
SSNA1-202ENST00000459860 EIF4A2Q14240 407 aaKnown RBP29.44■■■□□ 2.3
SSNA1-202ENST00000459860 MEGF6O75095 1541 aa29.43■■■□□ 2.3
SSNA1-202ENST00000459860 TATP17735 454 aaPredicted RBP29.42■■■□□ 2.3
SSNA1-202ENST00000459860 ANO8Q9HCE9 1232 aaPredicted RBP29.42■■■□□ 2.3
SSNA1-202ENST00000459860 SBF2Q86WG5 1849 aa29.41■■■□□ 2.3
SSNA1-202ENST00000459860 MTHFSP49914 203 aa29.41■■■□□ 2.3
SSNA1-202ENST00000459860 NCAPD2Q15021 1401 aa29.4■■■□□ 2.3
SSNA1-202ENST00000459860 DDX10Q13206 875 aaKnown RBP29.4■■■□□ 2.3
SSNA1-202ENST00000459860 KCNQ2O43526 872 aa29.39■■■□□ 2.3
SSNA1-202ENST00000459860 EYA1Q99502 592 aa29.39■■■□□ 2.3
SSNA1-202ENST00000459860 SPON1Q9HCB6 807 aa29.39■■■□□ 2.3
SSNA1-202ENST00000459860 SHANK3Q9BYB0 1731 aa29.38■■■□□ 2.29
SSNA1-202ENST00000459860 RGPD3A6NKT7 1758 aaPredicted RBP29.36■■■□□ 2.29
SSNA1-202ENST00000459860 RGPD4Q7Z3J3 1758 aa29.36■■■□□ 2.29
SSNA1-202ENST00000459860 ZCRB1Q8TBF4 217 aaKnown RBP29.36■■■□□ 2.29
SSNA1-202ENST00000459860 PKD1L3Q7Z443 1732 aa29.35■■■□□ 2.29
SSNA1-202ENST00000459860 IGSF1Q8N6C5 1336 aa29.35■■■□□ 2.29
SSNA1-202ENST00000459860 DDX54Q8TDD1 881 aaKnown RBP29.34■■■□□ 2.29
SSNA1-202ENST00000459860 PDGFDQ9GZP0 370 aaPredicted RBP29.33■■■□□ 2.29
SSNA1-202ENST00000459860 NHSQ6T4R5 1651 aa29.31■■■□□ 2.28
SSNA1-202ENST00000459860 TXNRD1Q16881 649 aa29.31■■■□□ 2.28
SSNA1-202ENST00000459860 CFAP53Q96M91 514 aa29.31■■■□□ 2.28
SSNA1-202ENST00000459860 PCDH11XQ9BZA7 1347 aa29.3■■■□□ 2.28
SSNA1-202ENST00000459860 PCDH11YQ9BZA8 1340 aa29.3■■■□□ 2.28
SSNA1-202ENST00000459860 PLEKHG2Q9H7P9 1386 aa29.29■■■□□ 2.28
SSNA1-202ENST00000459860 ZNF316A6NFI3 1004 aaPredicted RBP29.29■■■□□ 2.28
SSNA1-202ENST00000459860 DIAPH1O60610 1272 aaKnown RBP29.29■■■□□ 2.28
SSNA1-202ENST00000459860 IL13P35225 146 aa29.29■■■□□ 2.28
SSNA1-202ENST00000459860 PPP2R1AP30153 589 aa29.28■■■□□ 2.28
SSNA1-202ENST00000459860 PPP1R1BQ9UD71 204 aaPredicted RBP29.28■■■□□ 2.28
SSNA1-202ENST00000459860 SPG7Q9UQ90 795 aa29.28■■■□□ 2.28
SSNA1-202ENST00000459860 KAT6BQ8WYB5 2073 aa29.28■■■□□ 2.28
SSNA1-202ENST00000459860 DOT1LQ8TEK3 1739 aa29.28■■■□□ 2.28
SSNA1-202ENST00000459860 COL3A1P02461 1466 aaPredicted RBP29.26■■■□□ 2.27
SSNA1-202ENST00000459860 CASZ1Q86V15 1759 aa29.24■■■□□ 2.27
SSNA1-202ENST00000459860 SULT6B1Q6IMI4 303 aa29.24■■■□□ 2.27
SSNA1-202ENST00000459860 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.24■■■□□ 2.27
SSNA1-202ENST00000459860 PTGER2P43116 358 aa29.23■■■□□ 2.27
SSNA1-202ENST00000459860 SLC15A2Q16348 729 aa29.23■■■□□ 2.27
SSNA1-202ENST00000459860 ACSBG1Q96GR2 724 aa29.23■■■□□ 2.27
SSNA1-202ENST00000459860 ZBTB7AO95365 584 aa29.22■■■□□ 2.27
SSNA1-202ENST00000459860 RALBP1Q15311 655 aa29.22■■■□□ 2.27
SSNA1-202ENST00000459860 STK32BQ9NY57 414 aa29.22■■■□□ 2.27
SSNA1-202ENST00000459860 KDRP35968 1356 aa29.22■■■□□ 2.27
SSNA1-202ENST00000459860 BTAF1O14981 1849 aa29.2■■■□□ 2.27
SSNA1-202ENST00000459860 AEBP1Q8IUX7 1158 aa29.2■■■□□ 2.26
SSNA1-202ENST00000459860 U2SURPO15042 1029 aaKnown RBP29.19■■■□□ 2.26
SSNA1-202ENST00000459860 PLEKHO1Q53GL0 409 aaPredicted RBP29.18■■■□□ 2.26
SSNA1-202ENST00000459860 NUDCQ9Y266 331 aa29.18■■■□□ 2.26
SSNA1-202ENST00000459860 CYP27B1O15528 508 aa29.17■■■□□ 2.26
SSNA1-202ENST00000459860 AMOTQ4VCS5 1084 aa29.17■■■□□ 2.26
SSNA1-202ENST00000459860 YY1P25490 414 aa29.16■■■□□ 2.26
SSNA1-202ENST00000459860 SYTL4Q96C24 671 aaPredicted RBP29.16■■■□□ 2.26
SSNA1-202ENST00000459860 ATF5Q9Y2D1 282 aaPredicted RBP29.16■■■□□ 2.26
SSNA1-202ENST00000459860 HMOX1P09601 288 aa29.15■■■□□ 2.26
SSNA1-202ENST00000459860 IFNL2Q8IZJ0 200 aa29.15■■■□□ 2.26
SSNA1-202ENST00000459860 SGIP1Q9BQI5 828 aa29.13■■■□□ 2.25
SSNA1-202ENST00000459860 TOGARAM1Q9Y4F4 1720 aa29.13■■■□□ 2.25
SSNA1-202ENST00000459860 ITGB4P16144 1822 aa29.11■■■□□ 2.25
SSNA1-202ENST00000459860 PHKG2P15735 406 aa29.11■■■□□ 2.25
SSNA1-202ENST00000459860 PRIM1P49642 420 aaKnown RBP29.11■■■□□ 2.25
SSNA1-202ENST00000459860 ZNF530Q6P9A1 599 aaPredicted RBP29.11■■■□□ 2.25
SSNA1-202ENST00000459860 MTFR1LQ9H019 292 aa29.11■■■□□ 2.25
SSNA1-202ENST00000459860 LRRC4BQ9NT99 713 aa29.11■■■□□ 2.25
SSNA1-202ENST00000459860 MYBBP1AQ9BQG0 1328 aaKnown RBP29.11■■■□□ 2.25
SSNA1-202ENST00000459860 HSP90AB1P08238 724 aaKnown RBP29.09■■■□□ 2.25
SSNA1-202ENST00000459860 NKX1-1Q15270 411 aaPredicted RBP29.09■■■□□ 2.25
SSNA1-202ENST00000459860 C1orf141Q5JVX7 400 aa29.09■■■□□ 2.25
SSNA1-202ENST00000459860 PAPPAQ13219 1627 aa29.09■■■□□ 2.25
SSNA1-202ENST00000459860 ZNF827Q17R98 1081 aa29.08■■■□□ 2.25
SSNA1-202ENST00000459860 DCAF8L1A6NGE4 600 aa29.06■■■□□ 2.24
SSNA1-202ENST00000459860 U2AF1L5P0DN76 240 aaPredicted RBP29.06■■■□□ 2.24
SSNA1-202ENST00000459860 U2AF1Q01081 240 aaKnown RBP eCLIP29.06■■■□□ 2.24
SSNA1-202ENST00000459860 FHDC1Q9C0D6 1143 aaPredicted RBP29.05■■■□□ 2.24
SSNA1-202ENST00000459860 SYT17Q9BSW7 474 aa29.04■■■□□ 2.24
SSNA1-202ENST00000459860 PRKRIP1Q9H875 184 aaPredicted RBP29.04■■■□□ 2.24
SSNA1-202ENST00000459860 MPRIPQ6WCQ1 1025 aa29.02■■■□□ 2.24
SSNA1-202ENST00000459860 AKT1S1Q96B36 256 aa29.02■■■□□ 2.24
SSNA1-202ENST00000459860 DCAF5Q96JK2 942 aa29.02■■■□□ 2.24
SSNA1-202ENST00000459860 VIRMAQ69YN4 1812 aaKnown RBP29.01■■■□□ 2.24
SSNA1-202ENST00000459860 LY75O60449 1722 aa29.01■■■□□ 2.23
SSNA1-202ENST00000459860 SCN11AQ9UI33 1791 aa29.01■■■□□ 2.23
SSNA1-202ENST00000459860 AKAP4Q5JQC9 854 aa29■■■□□ 2.23
SSNA1-202ENST00000459860 TMOD3Q9NYL9 352 aa29■■■□□ 2.23
SSNA1-202ENST00000459860 PRKAR2BP31323 418 aa28.99■■■□□ 2.23
SSNA1-202ENST00000459860 SLC27A3Q5K4L6 730 aa28.99■■■□□ 2.23
SSNA1-202ENST00000459860 RSPH6AQ9H0K4 717 aa28.99■■■□□ 2.23
SSNA1-202ENST00000459860 KDM6AO15550 1401 aaPredicted RBP28.97■■■□□ 2.23
SSNA1-202ENST00000459860 FCHSD2O94868 740 aa28.97■■■□□ 2.23
SSNA1-202ENST00000459860 NEFMP07197 916 aa28.97■■■□□ 2.23
SSNA1-202ENST00000459860 MTHFSDQ2M296 383 aaKnown RBP28.97■■■□□ 2.23
SSNA1-202ENST00000459860 GAS2L2Q8NHY3 880 aa28.97■■■□□ 2.23
SSNA1-202ENST00000459860 ARXQ96QS3 562 aa28.97■■■□□ 2.23
SSNA1-202ENST00000459860 UTRNP46939 3433 aa28.97■■■□□ 2.23
SSNA1-202ENST00000459860 ERVV-2B6SEH9 535 aa28.96■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms