RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 SMG6Q86US8 1419 aaKnown RBP30.05■■■□□ 2.4
CPNE1-220ENST00000458038 QSER1Q2KHR3 1735 aa30.05■■■□□ 2.4
CPNE1-220ENST00000458038 AKT1S1Q96B36 256 aa30.05■■■□□ 2.4
CPNE1-220ENST00000458038 SYTL4Q96C24 671 aaPredicted RBP30.05■■■□□ 2.4
CPNE1-220ENST00000458038 GGNBP2Q9H3C7 697 aa30.05■■■□□ 2.4
CPNE1-220ENST00000458038 RRS1Q15050 365 aaKnown RBP30.04■■■□□ 2.4
CPNE1-220ENST00000458038 KIF24Q5T7B8 1368 aa30.03■■■□□ 2.4
CPNE1-220ENST00000458038 NBPF6Q5VWK0 638 aa30.03■■■□□ 2.4
CPNE1-220ENST00000458038 RAPGEF4Q8WZA2 1011 aa30.03■■■□□ 2.4
CPNE1-220ENST00000458038 NBPF4Q96M43 638 aa30.03■■■□□ 2.4
CPNE1-220ENST00000458038 MAP3K5Q99683 1374 aa30.03■■■□□ 2.4
CPNE1-220ENST00000458038 TIMELESSQ9UNS1 1208 aa30.02■■■□□ 2.4
CPNE1-220ENST00000458038 HMGB2P26583 209 aaKnown RBP30.01■■■□□ 2.39
CPNE1-220ENST00000458038 DOT1LQ8TEK3 1739 aa30.01■■■□□ 2.39
CPNE1-220ENST00000458038 SHANK3Q9BYB0 1731 aa30.01■■■□□ 2.39
CPNE1-220ENST00000458038 MEGF6O75095 1541 aa30.01■■■□□ 2.39
CPNE1-220ENST00000458038 INSRP06213 1382 aa30■■■□□ 2.39
CPNE1-220ENST00000458038 TFCP2L1Q9NZI6 479 aa29.99■■■□□ 2.39
CPNE1-220ENST00000458038 UTRNP46939 3433 aa29.99■■■□□ 2.39
CPNE1-220ENST00000458038 LY75O60449 1722 aa29.99■■■□□ 2.39
CPNE1-220ENST00000458038 KIF20BQ96Q89 1820 aa29.99■■■□□ 2.39
CPNE1-220ENST00000458038 TATP17735 454 aaPredicted RBP29.97■■■□□ 2.39
CPNE1-220ENST00000458038 NSD2O96028 1365 aa29.97■■■□□ 2.39
CPNE1-220ENST00000458038 FLT4P35916 1363 aa29.97■■■□□ 2.39
CPNE1-220ENST00000458038 CHD4Q14839 1912 aa29.96■■■□□ 2.39
CPNE1-220ENST00000458038 POLD1P28340 1107 aa29.96■■■□□ 2.39
CPNE1-220ENST00000458038 PNPLA7Q6ZV29 1317 aa29.95■■■□□ 2.38
CPNE1-220ENST00000458038 HSP90AB2PQ58FF8 381 aa29.94■■■□□ 2.38
CPNE1-220ENST00000458038 USHBP1Q8N6Y0 703 aa29.93■■■□□ 2.38
CPNE1-220ENST00000458038 CCNL1Q9UK58 526 aaPredicted RBP29.93■■■□□ 2.38
CPNE1-220ENST00000458038 COL24A1Q17RW2 1714 aa29.93■■■□□ 2.38
CPNE1-220ENST00000458038 PCDH11XQ9BZA7 1347 aa29.93■■■□□ 2.38
CPNE1-220ENST00000458038 PCDH11YQ9BZA8 1340 aa29.93■■■□□ 2.38
CPNE1-220ENST00000458038 CARD14Q9BXL6 1004 aa29.9■■■□□ 2.38
CPNE1-220ENST00000458038 TUBGCP6Q96RT7 1819 aa29.89■■■□□ 2.38
CPNE1-220ENST00000458038 KCNQ4P56696 695 aa29.89■■■□□ 2.38
CPNE1-220ENST00000458038 CLSPNQ9HAW4 1339 aa29.89■■■□□ 2.38
CPNE1-220ENST00000458038 NSD3Q9BZ95 1437 aa29.86■■■□□ 2.37
CPNE1-220ENST00000458038 ZNF784Q8NCA9 323 aaPredicted RBP29.84■■■□□ 2.37
CPNE1-220ENST00000458038 GPR162Q16538 588 aa29.83■■■□□ 2.37
CPNE1-220ENST00000458038 EMILIN1Q9Y6C2 1016 aa29.83■■■□□ 2.37
CPNE1-220ENST00000458038 FLAD1Q8NFF5 587 aa29.82■■■□□ 2.36
CPNE1-220ENST00000458038 WASHC2AQ641Q2 1341 aa29.81■■■□□ 2.36
CPNE1-220ENST00000458038 SMARCC1Q92922 1105 aaPredicted RBP29.81■■■□□ 2.36
CPNE1-220ENST00000458038 CYP27B1O15528 508 aa29.8■■■□□ 2.36
CPNE1-220ENST00000458038 MAP2P11137 1827 aaKnown RBP29.8■■■□□ 2.36
CPNE1-220ENST00000458038 NCAPD2Q15021 1401 aa29.79■■■□□ 2.36
CPNE1-220ENST00000458038 GOLGB1Q14789 3259 aaKnown RBP29.79■■■□□ 2.36
CPNE1-220ENST00000458038 MSH5O43196 834 aa29.79■■■□□ 2.36
CPNE1-220ENST00000458038 MPRIPQ6WCQ1 1025 aa29.79■■■□□ 2.36
CPNE1-220ENST00000458038 COL23A1Q86Y22 540 aaPredicted RBP29.79■■■□□ 2.36
CPNE1-220ENST00000458038 KLHL34Q8N239 644 aa29.79■■■□□ 2.36
CPNE1-220ENST00000458038 SPG7Q9UQ90 795 aa29.79■■■□□ 2.36
CPNE1-220ENST00000458038 ANKRD26Q9UPS8 1709 aa29.79■■■□□ 2.36
CPNE1-220ENST00000458038 PPM1GO15355 546 aaPredicted RBP29.78■■■□□ 2.36
CPNE1-220ENST00000458038 PKD1L3Q7Z443 1732 aa29.78■■■□□ 2.36
CPNE1-220ENST00000458038 C5P01031 1676 aa29.78■■■□□ 2.36
CPNE1-220ENST00000458038 PALLDQ8WX93 1383 aa29.77■■■□□ 2.36
CPNE1-220ENST00000458038 NKX1-1Q15270 411 aaPredicted RBP29.77■■■□□ 2.36
CPNE1-220ENST00000458038 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.77■■■□□ 2.361e-6■■□□□ 12.2
CPNE1-220ENST00000458038 ITGB4P16144 1822 aa29.77■■■□□ 2.36
CPNE1-220ENST00000458038 TAF1LQ8IZX4 1826 aa29.76■■■□□ 2.35
CPNE1-220ENST00000458038 EYA1Q99502 592 aa29.71■■■□□ 2.35
CPNE1-220ENST00000458038 POLKQ9UBT6 870 aa29.71■■■□□ 2.35
CPNE1-220ENST00000458038 PLEKHG2Q9H7P9 1386 aa29.7■■■□□ 2.35
CPNE1-220ENST00000458038 TOGARAM1Q9Y4F4 1720 aa29.7■■■□□ 2.34
CPNE1-220ENST00000458038 GRIN3BO60391 1043 aa29.69■■■□□ 2.34
CPNE1-220ENST00000458038 PELP1Q8IZL8 1130 aaKnown RBP29.69■■■□□ 2.34
CPNE1-220ENST00000458038 NLGN2Q8NFZ4 835 aa29.69■■■□□ 2.34
CPNE1-220ENST00000458038 PIGBQ92521 554 aa29.69■■■□□ 2.34
CPNE1-220ENST00000458038 AK7Q96M32 723 aa29.68■■■□□ 2.34
CPNE1-220ENST00000458038 PCGF6Q9BYE7 350 aa29.67■■■□□ 2.34
CPNE1-220ENST00000458038 C4BP0C0L5 1744 aa29.66■■■□□ 2.34
CPNE1-220ENST00000458038 IFNL2Q8IZJ0 200 aa29.66■■■□□ 2.34
CPNE1-220ENST00000458038 CD2APQ9Y5K6 639 aa29.66■■■□□ 2.34
CPNE1-220ENST00000458038 EIF4G2P78344 907 aaKnown RBP eCLIP29.65■■■□□ 2.34
CPNE1-220ENST00000458038 TMOD3Q9NYL9 352 aa29.65■■■□□ 2.34
CPNE1-220ENST00000458038 MSL1Q68DK7 614 aa29.64■■■□□ 2.34
CPNE1-220ENST00000458038 POLR3GLQ9BT43 218 aa29.64■■■□□ 2.34
CPNE1-220ENST00000458038 LOC102724428A0A0B4J2F2 783 aa29.62■■■□□ 2.33
CPNE1-220ENST00000458038 SIK1P57059 783 aa29.62■■■□□ 2.33
CPNE1-220ENST00000458038 UBR3Q6ZT12 1888 aa29.61■■■□□ 2.33
CPNE1-220ENST00000458038 PHKG2P15735 406 aa29.61■■■□□ 2.33
CPNE1-220ENST00000458038 EIF4A2Q14240 407 aaKnown RBP29.61■■■□□ 2.33
CPNE1-220ENST00000458038 SSFA2P28290 1259 aa29.6■■■□□ 2.33
CPNE1-220ENST00000458038 TNNT2P45379 298 aaPredicted RBP29.58■■■□□ 2.33
CPNE1-220ENST00000458038 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.57■■■□□ 2.32
CPNE1-220ENST00000458038 YBX3P16989 372 aaKnown RBP eCLIP29.57■■■□□ 2.322e-6■■■■□ 21.8
CPNE1-220ENST00000458038 C1QTNF8P60827 252 aa29.57■■■□□ 2.32
CPNE1-220ENST00000458038 HSP90AB1P08238 724 aaKnown RBP29.56■■■□□ 2.32
CPNE1-220ENST00000458038 PANK3Q9H999 370 aa29.56■■■□□ 2.32
CPNE1-220ENST00000458038 ASAP1Q9ULH1 1129 aa29.56■■■□□ 2.32
CPNE1-220ENST00000458038 IGSF1Q8N6C5 1336 aa29.55■■■□□ 2.32
CPNE1-220ENST00000458038 HSPA5P11021 654 aaKnown RBP29.55■■■□□ 2.32
CPNE1-220ENST00000458038 ERVV-2B6SEH9 535 aa29.54■■■□□ 2.32
CPNE1-220ENST00000458038 PHF14O94880 888 aa29.54■■■□□ 2.32
CPNE1-220ENST00000458038 ATP6V1AP38606 617 aa29.54■■■□□ 2.32
CPNE1-220ENST00000458038 LINC00116Q8NCU8 138 aa29.54■■■□□ 2.32
CPNE1-220ENST00000458038 PLEKHO1Q53GL0 409 aaPredicted RBP29.52■■■□□ 2.32
CPNE1-220ENST00000458038 AMIGO3Q86WK7 504 aa29.52■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms