RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 GIGYF1O75420 1035 aaPredicted RBP8.48□□□□□ -1.05
VPS41-209ENST00000457055 RNFT1Q5M7Z0 435 aa8.48□□□□□ -1.05
VPS41-209ENST00000457055 SV2AQ7L0J3 742 aa8.48□□□□□ -1.05
VPS41-209ENST00000457055 SENP3-EIF4A1A0A087X0R7 540 aa8.47□□□□□ -1.05
VPS41-209ENST00000457055 LYSMD3Q7Z3D4 306 aa8.47□□□□□ -1.05
VPS41-209ENST00000457055 ATP5J2-PTCD1G3V325 749 aa8.45□□□□□ -1.06
VPS41-209ENST00000457055 BRPF1P55201 1214 aaPredicted RBP8.44□□□□□ -1.06
VPS41-209ENST00000457055 PRICKLE2Q7Z3G6 844 aa8.44□□□□□ -1.06
VPS41-209ENST00000457055 SVOPQ8N4V2 548 aa8.44□□□□□ -1.06
VPS41-209ENST00000457055 MEN1O00255 615 aa8.43□□□□□ -1.06
VPS41-209ENST00000457055 RHOQP17081 205 aa8.43□□□□□ -1.06
VPS41-209ENST00000457055 RNF144AP50876 292 aaPredicted RBP8.43□□□□□ -1.06
VPS41-209ENST00000457055 KCNMA1Q12791 1236 aa8.43□□□□□ -1.06
VPS41-209ENST00000457055 NR1H3Q13133 447 aa8.43□□□□□ -1.06
VPS41-209ENST00000457055 RNF20Q5VTR2 975 aa8.43□□□□□ -1.06
VPS41-209ENST00000457055 ZNF385CQ66K41 422 aaPredicted RBP8.43□□□□□ -1.06
VPS41-209ENST00000457055 CCDC125Q86Z20 511 aa8.43□□□□□ -1.06
VPS41-209ENST00000457055 ERVK-9P63128 1117 aa8.42□□□□□ -1.06
VPS41-209ENST00000457055 CC2D2BQ6DHV5 1058 aa8.42□□□□□ -1.06
VPS41-209ENST00000457055 ADAMTS8Q9UP79 889 aa8.42□□□□□ -1.06
VPS41-209ENST00000457055 SLURP2P0DP57 97 aa8.41□□□□□ -1.06
VPS41-209ENST00000457055 MCCD1P59942 119 aaPredicted RBP8.41□□□□□ -1.06
VPS41-209ENST00000457055 BANK1Q8NDB2 785 aa8.41□□□□□ -1.06
VPS41-209ENST00000457055 ZNF592Q92610 1267 aa8.41□□□□□ -1.06
VPS41-209ENST00000457055 CUEDC1Q9NWM3 386 aaPredicted RBP8.41□□□□□ -1.06
VPS41-209ENST00000457055 ZNF330Q9Y3S2 320 aaPredicted RBP8.41□□□□□ -1.06
VPS41-209ENST00000457055 NDUFB9Q9Y6M9 179 aa8.41□□□□□ -1.06
VPS41-209ENST00000457055 RNF225M0QZC1 329 aaPredicted RBP8.4□□□□□ -1.06
VPS41-209ENST00000457055 GPC1P35052 558 aa8.4□□□□□ -1.06
VPS41-209ENST00000457055 MTMR14Q8NCE2 650 aa8.4□□□□□ -1.06
VPS41-209ENST00000457055 PCDHB11Q9Y5F2 797 aa8.4□□□□□ -1.06
VPS41-209ENST00000457055 A0A1W2PRU2 124 aa8.39□□□□□ -1.07
VPS41-209ENST00000457055 APBB1O00213 710 aa8.39□□□□□ -1.07
VPS41-209ENST00000457055 SOCS7O14512 581 aa8.39□□□□□ -1.07
VPS41-209ENST00000457055 CYP2U1Q7Z449 544 aa8.39□□□□□ -1.07
VPS41-209ENST00000457055 WHAMMQ8TF30 809 aa8.39□□□□□ -1.07
VPS41-209ENST00000457055 NLRP3Q96P20 1036 aa8.39□□□□□ -1.07
VPS41-209ENST00000457055 CCDC180Q9P1Z9 1646 aa8.39□□□□□ -1.07
VPS41-209ENST00000457055 GPR37L1O60883 481 aa8.38□□□□□ -1.07
VPS41-209ENST00000457055 ADAMTS2O95450 1211 aa8.38□□□□□ -1.07
VPS41-209ENST00000457055 SCTRP47872 440 aa8.38□□□□□ -1.07
VPS41-209ENST00000457055 GSK3AP49840 483 aa8.38□□□□□ -1.07
VPS41-209ENST00000457055 SLC27A3Q5K4L6 730 aa8.38□□□□□ -1.07
VPS41-209ENST00000457055 GAS6Q14393 721 aa8.37□□□□□ -1.07
VPS41-209ENST00000457055 RIPOR1Q6ZS17 1223 aa8.37□□□□□ -1.07
VPS41-209ENST00000457055 BCL11AQ9H165 835 aa8.37□□□□□ -1.07
VPS41-209ENST00000457055 ESF1Q9H501 851 aaKnown RBP8.37□□□□□ -1.07
VPS41-209ENST00000457055 ARHGEF15O94989 841 aa8.36□□□□□ -1.07
VPS41-209ENST00000457055 SRSF11Q05519 484 aaKnown RBP8.36□□□□□ -1.07
VPS41-209ENST00000457055 CLN3Q13286 438 aa8.36□□□□□ -1.07
VPS41-209ENST00000457055 TRIM22Q8IYM9 498 aa8.36□□□□□ -1.07
VPS41-209ENST00000457055 ZNF837Q96EG3 531 aaPredicted RBP8.36□□□□□ -1.07
VPS41-209ENST00000457055 ARHGEF10LQ9HCE6 1279 aa8.36□□□□□ -1.07
VPS41-209ENST00000457055 SNRKQ9NRH2 765 aa8.36□□□□□ -1.07
VPS41-209ENST00000457055 RASSF7Q02833 373 aa8.35□□□□□ -1.07
VPS41-209ENST00000457055 POU4F2Q12837 409 aa8.35□□□□□ -1.07
VPS41-209ENST00000457055 TMEM151AQ8N4L1 468 aa8.35□□□□□ -1.07
VPS41-209ENST00000457055 KCTD17Q8N5Z5 321 aa8.35□□□□□ -1.07
VPS41-209ENST00000457055 GMCL1Q96IK5 515 aa8.35□□□□□ -1.07
VPS41-209ENST00000457055 OSBPL3Q9H4L5 887 aa8.35□□□□□ -1.07
VPS41-209ENST00000457055 DYRK1BQ9Y463 629 aa8.35□□□□□ -1.07
VPS41-209ENST00000457055 GPR25O00155 361 aa8.34□□□□□ -1.07
VPS41-209ENST00000457055 TRAK2O60296 914 aa8.34□□□□□ -1.07
VPS41-209ENST00000457055 GDF11O95390 407 aa8.34□□□□□ -1.07
VPS41-209ENST00000457055 MAP3K10Q02779 954 aa8.34□□□□□ -1.07
VPS41-209ENST00000457055 TRIM26Q12899 539 aaPredicted RBP8.34□□□□□ -1.07
VPS41-209ENST00000457055 FOXR1Q6PIV2 292 aa8.34□□□□□ -1.07
VPS41-209ENST00000457055 GAS2L1Q99501 681 aaPredicted RBP8.34□□□□□ -1.07
VPS41-209ENST00000457055 MARSP56192 900 aaKnown RBP8.33□□□□□ -1.08
VPS41-209ENST00000457055 DBN1Q16643 649 aa8.33□□□□□ -1.08
VPS41-209ENST00000457055 NBPF10Q6P3W6 841 aaKnown RBP8.33□□□□□ -1.08
VPS41-209ENST00000457055 LYPD4Q6UWN0 246 aa8.33□□□□□ -1.08
VPS41-209ENST00000457055 NBPF15Q8N660 670 aa8.33□□□□□ -1.08
VPS41-209ENST00000457055 GRIP2Q9C0E4 1043 aa8.33□□□□□ -1.08
VPS41-209ENST00000457055 RAB6BQ9NRW1 208 aa8.33□□□□□ -1.08
VPS41-209ENST00000457055 MBIPQ9NS73 344 aa8.33□□□□□ -1.08
VPS41-209ENST00000457055 H7C1W4 665 aa8.32□□□□□ -1.08
VPS41-209ENST00000457055 SPATA31C2B4DYI2 1134 aa8.31□□□□□ -1.08
VPS41-209ENST00000457055 WASLO00401 505 aaPredicted RBP8.31□□□□□ -1.08
VPS41-209ENST00000457055 CELA2BP08218 269 aaPredicted RBP8.31□□□□□ -1.08
VPS41-209ENST00000457055 IRS1P35568 1242 aa8.31□□□□□ -1.08
VPS41-209ENST00000457055 GTPBP3Q969Y2 492 aaKnown RBP8.31□□□□□ -1.08
VPS41-209ENST00000457055 UNC13AQ9UPW8 1703 aa8.3□□□□□ -1.08
VPS41-209ENST00000457055 MYCP01106 439 aaPredicted RBP8.3□□□□□ -1.08
VPS41-209ENST00000457055 GNRH1P01148 92 aa8.3□□□□□ -1.08
VPS41-209ENST00000457055 TAS1R3Q7RTX0 852 aa8.3□□□□□ -1.08
VPS41-209ENST00000457055 SCARF2Q96GP6 870 aaPredicted RBP8.3□□□□□ -1.08
VPS41-209ENST00000457055 TRERF1Q96PN7 1200 aa8.3□□□□□ -1.08
VPS41-209ENST00000457055 TIMMDC1Q9NPL8 285 aa8.3□□□□□ -1.08
VPS41-209ENST00000457055 CEP126Q9P2H0 1117 aa8.3□□□□□ -1.08
VPS41-209ENST00000457055 TBC1D2BQ9UPU7 963 aa8.3□□□□□ -1.08
VPS41-209ENST00000457055 WDR44Q5JSH3 913 aa8.29□□□□□ -1.08
VPS41-209ENST00000457055 CNKSR1Q969H4 720 aa8.29□□□□□ -1.08
VPS41-209ENST00000457055 CCDC85AQ96PX6 553 aaPredicted RBP8.29□□□□□ -1.08
VPS41-209ENST00000457055 CDCA7Q9BWT1 371 aaPredicted RBP8.29□□□□□ -1.08
VPS41-209ENST00000457055 IGF1RP08069 1367 aa8.29□□□□□ -1.08
VPS41-209ENST00000457055 RB1CC1Q8TDY2 1594 aa8.29□□□□□ -1.08
VPS41-209ENST00000457055 IL2RAP01589 272 aa8.28□□□□□ -1.08
VPS41-209ENST00000457055 ESYT1Q9BSJ8 1104 aa8.28□□□□□ -1.08
VPS41-209ENST00000457055 NUCKS1Q9H1E3 243 aaKnown RBP8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms