RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 DOT1LQ8TEK3 1739 aa29.19■■■□□ 2.26
HMGB3-205ENST00000455596 NSD2O96028 1365 aa29.16■■■□□ 2.26
HMGB3-205ENST00000455596 ZCRB1Q8TBF4 217 aaKnown RBP29.16■■■□□ 2.26
HMGB3-205ENST00000455596 RAPGEF4Q8WZA2 1011 aa29.16■■■□□ 2.26
HMGB3-205ENST00000455596 WASHC2AQ641Q2 1341 aa29.15■■■□□ 2.26
HMGB3-205ENST00000455596 POLKQ9UBT6 870 aa29.14■■■□□ 2.26
HMGB3-205ENST00000455596 KIF7Q2M1P5 1343 aa29.14■■■□□ 2.25
HMGB3-205ENST00000455596 TNNT2P45379 298 aaPredicted RBP29.13■■■□□ 2.25
HMGB3-205ENST00000455596 TATP17735 454 aaPredicted RBP29.12■■■□□ 2.25
HMGB3-205ENST00000455596 PROM2Q8N271 834 aa29.12■■■□□ 2.25
HMGB3-205ENST00000455596 TXNRD1Q16881 649 aa29.11■■■□□ 2.25
HMGB3-205ENST00000455596 PKD1L3Q7Z443 1732 aa29.11■■■□□ 2.25
HMGB3-205ENST00000455596 KNSTRNQ9Y448 316 aa29.1■■■□□ 2.25
HMGB3-205ENST00000455596 NCAPD2Q15021 1401 aa29.09■■■□□ 2.25
HMGB3-205ENST00000455596 MORC1Q86VD1 984 aa29.06■■■□□ 2.24
HMGB3-205ENST00000455596 ANO8Q9HCE9 1232 aaPredicted RBP29.05■■■□□ 2.24
HMGB3-205ENST00000455596 CASZ1Q86V15 1759 aa29.04■■■□□ 2.24
HMGB3-205ENST00000455596 PCDH11XQ9BZA7 1347 aa29.04■■■□□ 2.24
HMGB3-205ENST00000455596 PCDH11YQ9BZA8 1340 aa29.04■■■□□ 2.24
HMGB3-205ENST00000455596 SYTL4Q96C24 671 aaPredicted RBP29.04■■■□□ 2.24
HMGB3-205ENST00000455596 LY75O60449 1722 aa29.03■■■□□ 2.24
HMGB3-205ENST00000455596 EYA1Q99502 592 aa29.03■■■□□ 2.24
HMGB3-205ENST00000455596 PAPPAQ13219 1627 aa29.02■■■□□ 2.24
HMGB3-205ENST00000455596 PRIM1P49642 420 aaKnown RBP29.02■■■□□ 2.24
HMGB3-205ENST00000455596 EIF4A2Q14240 407 aaKnown RBP29.01■■■□□ 2.23
HMGB3-205ENST00000455596 STK32BQ9NY57 414 aa29.01■■■□□ 2.23
HMGB3-205ENST00000455596 ITGB4P16144 1822 aa29.01■■■□□ 2.23
HMGB3-205ENST00000455596 AMER1Q5JTC6 1135 aaPredicted RBP28.98■■■□□ 2.23
HMGB3-205ENST00000455596 TOGARAM1Q9Y4F4 1720 aa28.97■■■□□ 2.23
HMGB3-205ENST00000455596 SLC15A2Q16348 729 aa28.97■■■□□ 2.23
HMGB3-205ENST00000455596 SPG7Q9UQ90 795 aa28.96■■■□□ 2.23
HMGB3-205ENST00000455596 SRCAPQ6ZRS2 3230 aa28.95■■■□□ 2.23
HMGB3-205ENST00000455596 CYP27B1O15528 508 aa28.95■■■□□ 2.22
HMGB3-205ENST00000455596 PER1O15534 1290 aaPredicted RBP28.94■■■□□ 2.22
HMGB3-205ENST00000455596 SLC27A3Q5K4L6 730 aa28.93■■■□□ 2.22
HMGB3-205ENST00000455596 SPON1Q9HCB6 807 aa28.93■■■□□ 2.22
HMGB3-205ENST00000455596 QSER1Q2KHR3 1735 aa28.93■■■□□ 2.22
HMGB3-205ENST00000455596 IGSF1Q8N6C5 1336 aa28.93■■■□□ 2.22
HMGB3-205ENST00000455596 LRRC4BQ9NT99 713 aa28.92■■■□□ 2.22
HMGB3-205ENST00000455596 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.92■■■□□ 2.22
HMGB3-205ENST00000455596 PLEKHG2Q9H7P9 1386 aa28.9■■■□□ 2.22
HMGB3-205ENST00000455596 TUBGCP6Q96RT7 1819 aa28.89■■■□□ 2.22
HMGB3-205ENST00000455596 PDGFDQ9GZP0 370 aaPredicted RBP28.88■■■□□ 2.21
HMGB3-205ENST00000455596 NKX1-1Q15270 411 aaPredicted RBP28.87■■■□□ 2.21
HMGB3-205ENST00000455596 TAF1LQ8IZX4 1826 aa28.86■■■□□ 2.21
HMGB3-205ENST00000455596 CC2D1BQ5T0F9 858 aaKnown RBP28.86■■■□□ 2.21
HMGB3-205ENST00000455596 C5P01031 1676 aa28.86■■■□□ 2.21
HMGB3-205ENST00000455596 ZNF827Q17R98 1081 aa28.85■■■□□ 2.21
HMGB3-205ENST00000455596 MPRIPQ6WCQ1 1025 aa28.85■■■□□ 2.21
HMGB3-205ENST00000455596 IFNL2Q8IZJ0 200 aa28.85■■■□□ 2.21
HMGB3-205ENST00000455596 PPP1R1BQ9UD71 204 aaPredicted RBP28.84■■■□□ 2.21
HMGB3-205ENST00000455596 CCNL1Q9UK58 526 aaPredicted RBP28.84■■■□□ 2.21
HMGB3-205ENST00000455596 NPC1L1Q9UHC9 1359 aa28.84■■■□□ 2.21
HMGB3-205ENST00000455596 ZBTB7AO95365 584 aa28.83■■■□□ 2.21
HMGB3-205ENST00000455596 PHKG2P15735 406 aa28.83■■■□□ 2.21
HMGB3-205ENST00000455596 KCNQ4P56696 695 aa28.83■■■□□ 2.21
HMGB3-205ENST00000455596 MTHFSP49914 203 aa28.82■■■□□ 2.2
HMGB3-205ENST00000455596 AKT1S1Q96B36 256 aa28.82■■■□□ 2.2
HMGB3-205ENST00000455596 PALLDQ8WX93 1383 aa28.8■■■□□ 2.2
HMGB3-205ENST00000455596 IL13P35225 146 aa28.8■■■□□ 2.2
HMGB3-205ENST00000455596 PLEKHO1Q53GL0 409 aaPredicted RBP28.79■■■□□ 2.2
HMGB3-205ENST00000455596 SMARCC1Q92922 1105 aaPredicted RBP28.78■■■□□ 2.2
HMGB3-205ENST00000455596 MTFR1LQ9H019 292 aa28.78■■■□□ 2.2
HMGB3-205ENST00000455596 ATF5Q9Y2D1 282 aaPredicted RBP28.78■■■□□ 2.2
HMGB3-205ENST00000455596 AMOTQ4VCS5 1084 aa28.77■■■□□ 2.2
HMGB3-205ENST00000455596 SULT6B1Q6IMI4 303 aa28.77■■■□□ 2.2
HMGB3-205ENST00000455596 AEBP1Q8IUX7 1158 aa28.77■■■□□ 2.2
HMGB3-205ENST00000455596 PIGBQ92521 554 aa28.77■■■□□ 2.2
HMGB3-205ENST00000455596 KDRP35968 1356 aa28.76■■■□□ 2.2
HMGB3-205ENST00000455596 CNGB1Q14028 1251 aaPredicted RBP28.76■■■□□ 2.19
HMGB3-205ENST00000455596 TMOD3Q9NYL9 352 aa28.76■■■□□ 2.19
HMGB3-205ENST00000455596 TFCP2L1Q9NZI6 479 aa28.76■■■□□ 2.19
HMGB3-205ENST00000455596 HMGB2P26583 209 aaKnown RBP28.75■■■□□ 2.19
HMGB3-205ENST00000455596 VIRMAQ69YN4 1812 aaKnown RBP28.75■■■□□ 2.19
HMGB3-205ENST00000455596 HSP90AB1P08238 724 aaKnown RBP28.74■■■□□ 2.19
HMGB3-205ENST00000455596 PTGER2P43116 358 aa28.73■■■□□ 2.19
HMGB3-205ENST00000455596 COL24A1Q17RW2 1714 aa28.73■■■□□ 2.19
HMGB3-205ENST00000455596 ZNF530Q6P9A1 599 aaPredicted RBP28.73■■■□□ 2.19
HMGB3-205ENST00000455596 PNPLA7Q6ZV29 1317 aa28.72■■■□□ 2.19
HMGB3-205ENST00000455596 C4BP0C0L5 1744 aa28.72■■■□□ 2.19
HMGB3-205ENST00000455596 SCN11AQ9UI33 1791 aa28.71■■■□□ 2.19
HMGB3-205ENST00000455596 DCAF5Q96JK2 942 aa28.71■■■□□ 2.19
HMGB3-205ENST00000455596 DIAPH1O60610 1272 aaKnown RBP28.7■■■□□ 2.18
HMGB3-205ENST00000455596 SLC16A10Q8TF71 515 aa28.7■■■□□ 2.18
HMGB3-205ENST00000455596 C1orf141Q5JVX7 400 aa28.69■■■□□ 2.18
HMGB3-205ENST00000455596 ERVV-2B6SEH9 535 aa28.68■■■□□ 2.18
HMGB3-205ENST00000455596 KDM6AO15550 1401 aaPredicted RBP28.68■■■□□ 2.18
HMGB3-205ENST00000455596 COL3A1P02461 1466 aaPredicted RBP28.67■■■□□ 2.18
HMGB3-205ENST00000455596 SGIP1Q9BQI5 828 aa28.67■■■□□ 2.18
HMGB3-205ENST00000455596 UBR3Q6ZT12 1888 aa28.67■■■□□ 2.18
HMGB3-205ENST00000455596 ASAP1Q9ULH1 1129 aa28.66■■■□□ 2.18
HMGB3-205ENST00000455596 HMOX1P09601 288 aa28.65■■■□□ 2.18
HMGB3-205ENST00000455596 ZNF831Q5JPB2 1677 aa28.64■■■□□ 2.18
HMGB3-205ENST00000455596 LOC102724428A0A0B4J2F2 783 aa28.64■■■□□ 2.18
HMGB3-205ENST00000455596 SIK1P57059 783 aa28.64■■■□□ 2.18
HMGB3-205ENST00000455596 ATG3Q9NT62 314 aa28.63■■■□□ 2.17
HMGB3-205ENST00000455596 CABP4P57796 275 aa28.62■■■□□ 2.17
HMGB3-205ENST00000455596 MSH5O43196 834 aa28.61■■■□□ 2.17
HMGB3-205ENST00000455596 COL23A1Q86Y22 540 aaPredicted RBP28.61■■■□□ 2.17
HMGB3-205ENST00000455596 ARXQ96QS3 562 aa28.61■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms