RNA–Protein interactions for RNA: ENST00000455111.1

GPC1-206, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 841 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-206ENST00000455111 USHBP1Q8N6Y0 703 aa22.5■■□□□ 1.19
GPC1-206ENST00000455111 TOGARAM1Q9Y4F4 1720 aa22.49■■□□□ 1.19
GPC1-206ENST00000455111 STK32BQ9NY57 414 aa22.49■■□□□ 1.19
GPC1-206ENST00000455111 ATF5Q9Y2D1 282 aaPredicted RBP22.49■■□□□ 1.19
GPC1-206ENST00000455111 HSP90AB2PQ58FF8 381 aa22.48■■□□□ 1.19
GPC1-206ENST00000455111 NSD3Q9BZ95 1437 aa22.48■■□□□ 1.19
GPC1-206ENST00000455111 MAP2P11137 1827 aaKnown RBP22.46■■□□□ 1.19
GPC1-206ENST00000455111 KCNQ4P56696 695 aa22.46■■□□□ 1.19
GPC1-206ENST00000455111 PKD1L3Q7Z443 1732 aa22.45■■□□□ 1.19
GPC1-206ENST00000455111 AKT1S1Q96B36 256 aa22.45■■□□□ 1.18
GPC1-206ENST00000455111 PPP1R1BQ9UD71 204 aaPredicted RBP22.45■■□□□ 1.18
GPC1-206ENST00000455111 INSRP06213 1382 aa22.45■■□□□ 1.18
GPC1-206ENST00000455111 PRIM1P49642 420 aaKnown RBP22.44■■□□□ 1.18
GPC1-206ENST00000455111 EMILIN1Q9Y6C2 1016 aa22.44■■□□□ 1.18
GPC1-206ENST00000455111 NCAPD2Q15021 1401 aa22.43■■□□□ 1.18
GPC1-206ENST00000455111 ZCRB1Q8TBF4 217 aaKnown RBP22.43■■□□□ 1.18
GPC1-206ENST00000455111 FLT4P35916 1363 aa22.42■■□□□ 1.18
GPC1-206ENST00000455111 PCGF6Q9BYE7 350 aa22.42■■□□□ 1.18
GPC1-206ENST00000455111 TIMELESSQ9UNS1 1208 aa22.42■■□□□ 1.18
GPC1-206ENST00000455111 ITGB4P16144 1822 aa22.42■■□□□ 1.18
GPC1-206ENST00000455111 MTFR1LQ9H019 292 aa22.4■■□□□ 1.18
GPC1-206ENST00000455111 TAF1LQ8IZX4 1826 aa22.4■■□□□ 1.18
GPC1-206ENST00000455111 CLSPNQ9HAW4 1339 aa22.39■■□□□ 1.18
GPC1-206ENST00000455111 KIF24Q5T7B8 1368 aa22.38■■□□□ 1.17
GPC1-206ENST00000455111 PNPLA7Q6ZV29 1317 aa22.38■■□□□ 1.17
GPC1-206ENST00000455111 CDCA8Q53HL2 280 aa22.38■■□□□ 1.17
GPC1-206ENST00000455111 C5P01031 1676 aa22.37■■□□□ 1.17
GPC1-206ENST00000455111 SYTL4Q96C24 671 aaPredicted RBP22.37■■□□□ 1.17
GPC1-206ENST00000455111 FHDC1Q9C0D6 1143 aaPredicted RBP22.37■■□□□ 1.17
GPC1-206ENST00000455111 CYP27B1O15528 508 aa22.36■■□□□ 1.17
GPC1-206ENST00000455111 SMG6Q86US8 1419 aaKnown RBP22.36■■□□□ 1.17
GPC1-206ENST00000455111 SLC27A3Q5K4L6 730 aa22.35■■□□□ 1.17
GPC1-206ENST00000455111 SYT17Q9BSW7 474 aa22.35■■□□□ 1.17
GPC1-206ENST00000455111 UTRNP46939 3433 aa22.35■■□□□ 1.17
GPC1-206ENST00000455111 CGNL1Q0VF96 1302 aa22.33■■□□□ 1.17
GPC1-206ENST00000455111 TATP17735 454 aaPredicted RBP22.32■■□□□ 1.16
GPC1-206ENST00000455111 HSPA5P11021 654 aaKnown RBP22.31■■□□□ 1.16
GPC1-206ENST00000455111 YY1P25490 414 aa22.31■■□□□ 1.16
GPC1-206ENST00000455111 RAPGEF4Q8WZA2 1011 aa22.31■■□□□ 1.16
GPC1-206ENST00000455111 POLKQ9UBT6 870 aa22.31■■□□□ 1.16
GPC1-206ENST00000455111 WASHC2AQ641Q2 1341 aa22.31■■□□□ 1.16
GPC1-206ENST00000455111 ARXQ96QS3 562 aa22.3■■□□□ 1.16
GPC1-206ENST00000455111 MAP3K5Q99683 1374 aa22.29■■□□□ 1.16
GPC1-206ENST00000455111 EYA1Q99502 592 aa22.29■■□□□ 1.16
GPC1-206ENST00000455111 PCDH11XQ9BZA7 1347 aa22.29■■□□□ 1.16
GPC1-206ENST00000455111 PCDH11YQ9BZA8 1340 aa22.29■■□□□ 1.16
GPC1-206ENST00000455111 CCNL1Q9UK58 526 aaPredicted RBP22.28■■□□□ 1.16
GPC1-206ENST00000455111 C4BP0C0L5 1744 aa22.26■■□□□ 1.15
GPC1-206ENST00000455111 PPM1GO15355 546 aaPredicted RBP22.26■■□□□ 1.15
GPC1-206ENST00000455111 AMIGO3Q86WK7 504 aa22.26■■□□□ 1.15
GPC1-206ENST00000455111 UBR3Q6ZT12 1888 aa22.26■■□□□ 1.15
GPC1-206ENST00000455111 NKX1-1Q15270 411 aaPredicted RBP22.25■■□□□ 1.15
GPC1-206ENST00000455111 COL23A1Q86Y22 540 aaPredicted RBP22.25■■□□□ 1.15
GPC1-206ENST00000455111 POLR3GLQ9BT43 218 aa22.25■■□□□ 1.15
GPC1-206ENST00000455111 PALLDQ8WX93 1383 aa22.25■■□□□ 1.15
GPC1-206ENST00000455111 CHD4Q14839 1912 aa22.24■■□□□ 1.15
GPC1-206ENST00000455111 EIF4A2Q14240 407 aaKnown RBP22.24■■□□□ 1.15
GPC1-206ENST00000455111 TFCP2L1Q9NZI6 479 aa22.24■■□□□ 1.15
GPC1-206ENST00000455111 MPRIPQ6WCQ1 1025 aa22.23■■□□□ 1.15
GPC1-206ENST00000455111 SLC16A10Q8TF71 515 aa22.23■■□□□ 1.15
GPC1-206ENST00000455111 TNNT2P45379 298 aaPredicted RBP22.22■■□□□ 1.15
GPC1-206ENST00000455111 EIF4G2P78344 907 aaKnown RBP eCLIP22.22■■□□□ 1.15
GPC1-206ENST00000455111 PIGBQ92521 554 aa22.22■■□□□ 1.15
GPC1-206ENST00000455111 PANK3Q9H999 370 aa22.22■■□□□ 1.15
GPC1-206ENST00000455111 SMIM5Q71RC9 77 aa22.21■■□□□ 1.15
GPC1-206ENST00000455111 NLGN2Q8NFZ4 835 aa22.2■■□□□ 1.14
GPC1-206ENST00000455111 GOLGB1Q14789 3259 aaKnown RBP22.17■■□□□ 1.14
GPC1-206ENST00000455111 IGSF1Q8N6C5 1336 aa22.17■■□□□ 1.14
GPC1-206ENST00000455111 PHKG2P15735 406 aa22.17■■□□□ 1.14
GPC1-206ENST00000455111 MSL1Q68DK7 614 aa22.16■■□□□ 1.14
GPC1-206ENST00000455111 CCER1Q8TC90 406 aaPredicted RBP22.15■■□□□ 1.14
GPC1-206ENST00000455111 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.15■■□□□ 1.14
GPC1-206ENST00000455111 DCAF8L1A6NGE4 600 aa22.14■■□□□ 1.13
GPC1-206ENST00000455111 ASAP1Q9ULH1 1129 aa22.14■■□□□ 1.13
GPC1-206ENST00000455111 SPG7Q9UQ90 795 aa22.14■■□□□ 1.13
GPC1-206ENST00000455111 ITPK1Q13572 414 aa22.13■■□□□ 1.13
GPC1-206ENST00000455111 LINC00116Q8NCU8 138 aa22.13■■□□□ 1.13
GPC1-206ENST00000455111 COL5A3P25940 1745 aaPredicted RBP22.13■■□□□ 1.13
GPC1-206ENST00000455111 KDM6AO15550 1401 aaPredicted RBP22.13■■□□□ 1.13
GPC1-206ENST00000455111 POLD1P28340 1107 aa22.12■■□□□ 1.13
GPC1-206ENST00000455111 KLHL34Q8N239 644 aa22.12■■□□□ 1.13
GPC1-206ENST00000455111 ZNF784Q8NCA9 323 aaPredicted RBP22.12■■□□□ 1.13
GPC1-206ENST00000455111 ZNF831Q5JPB2 1677 aa22.11■■□□□ 1.13
GPC1-206ENST00000455111 AEBP1Q8IUX7 1158 aa22.11■■□□□ 1.13
GPC1-206ENST00000455111 SLC4A9Q96Q91 983 aa22.11■■□□□ 1.13
GPC1-206ENST00000455111 ATG3Q9NT62 314 aa22.11■■□□□ 1.13
GPC1-206ENST00000455111 KDRP35968 1356 aa22.11■■□□□ 1.13
GPC1-206ENST00000455111 IFNL2Q8IZJ0 200 aa22.1■■□□□ 1.13
GPC1-206ENST00000455111 LOC102724428A0A0B4J2F2 783 aa22.09■■□□□ 1.13
GPC1-206ENST00000455111 MSH5O43196 834 aa22.09■■□□□ 1.13
GPC1-206ENST00000455111 SIK1P57059 783 aa22.09■■□□□ 1.13
GPC1-206ENST00000455111 SMARCC1Q92922 1105 aaPredicted RBP22.09■■□□□ 1.13
GPC1-206ENST00000455111 PLEKHG2Q9H7P9 1386 aa22.09■■□□□ 1.13
GPC1-206ENST00000455111 KIF7Q2M1P5 1343 aa22.08■■□□□ 1.13
GPC1-206ENST00000455111 YBX3P16989 372 aaKnown RBP eCLIP22.08■■□□□ 1.13
GPC1-206ENST00000455111 AMER1Q5JTC6 1135 aaPredicted RBP22.08■■□□□ 1.13
GPC1-206ENST00000455111 KIAA1551Q9HCM1 1747 aa22.07■■□□□ 1.12
GPC1-206ENST00000455111 TMOD3Q9NYL9 352 aa22.07■■□□□ 1.12
GPC1-206ENST00000455111 VIRMAQ69YN4 1812 aaKnown RBP22.07■■□□□ 1.12
GPC1-206ENST00000455111 SCN11AQ9UI33 1791 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms