RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 COL3A1P02461 1466 aaPredicted RBP11.83□□□□□ -0.52
SYNE1-214ENST00000454018 INSRP06213 1382 aa11.83□□□□□ -0.52
SYNE1-214ENST00000454018 ZBTB7CA1YPR0 619 aa11.83□□□□□ -0.52
SYNE1-214ENST00000454018 FAM83GA6ND36 823 aa11.83□□□□□ -0.52
SYNE1-214ENST00000454018 AMPHP49418 695 aa11.83□□□□□ -0.52
SYNE1-214ENST00000454018 CHRNA2Q15822 529 aa11.83□□□□□ -0.52
SYNE1-214ENST00000454018 PRKRIP1Q9H875 184 aaPredicted RBP11.83□□□□□ -0.52
SYNE1-214ENST00000454018 POLKQ9UBT6 870 aa11.83□□□□□ -0.52
SYNE1-214ENST00000454018 EMILIN1Q9Y6C2 1016 aa11.83□□□□□ -0.52
SYNE1-214ENST00000454018 PARP4Q9UKK3 1724 aaKnown RBP11.83□□□□□ -0.52
SYNE1-214ENST00000454018 MYBBP1AQ9BQG0 1328 aaKnown RBP11.83□□□□□ -0.52
SYNE1-214ENST00000454018 BCL9LQ86UU0 1499 aa11.82□□□□□ -0.52
SYNE1-214ENST00000454018 ANP32CO43423 234 aa11.82□□□□□ -0.52
SYNE1-214ENST00000454018 FBLN1P23142 703 aa11.82□□□□□ -0.52
SYNE1-214ENST00000454018 HOXC9P31274 260 aa11.82□□□□□ -0.52
SYNE1-214ENST00000454018 IP6K1Q92551 441 aa11.82□□□□□ -0.52
SYNE1-214ENST00000454018 NGLY1Q96IV0 654 aa11.82□□□□□ -0.52
SYNE1-214ENST00000454018 PPP2R1AP30153 589 aa11.81□□□□□ -0.52
SYNE1-214ENST00000454018 FNBP4Q8N3X1 1017 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-214ENST00000454018 SPDYE1Q8NFV5 336 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-214ENST00000454018 ERBB3P21860 1342 aa11.81□□□□□ -0.52
SYNE1-214ENST00000454018 AFF2P51816 1311 aa11.81□□□□□ -0.52
SYNE1-214ENST00000454018 BTG4Q9NY30 223 aa11.81□□□□□ -0.52
SYNE1-214ENST00000454018 PPM1GO15355 546 aaPredicted RBP11.8□□□□□ -0.52
SYNE1-214ENST00000454018 GLI3P10071 1580 aa11.8□□□□□ -0.52
SYNE1-214ENST00000454018 MTHFSP49914 203 aa11.8□□□□□ -0.52
SYNE1-214ENST00000454018 CRB1P82279 1406 aa11.8□□□□□ -0.52
SYNE1-214ENST00000454018 DIEXFQ68CQ4 756 aaKnown RBP11.8□□□□□ -0.52
SYNE1-214ENST00000454018 ZC3H15Q8WU90 426 aaKnown RBP11.8□□□□□ -0.52
SYNE1-214ENST00000454018 WDR17Q8IZU2 1322 aa11.79□□□□□ -0.52
SYNE1-214ENST00000454018 ATRNO75882 1429 aa11.79□□□□□ -0.52
SYNE1-214ENST00000454018 UNC5CLQ8IV45 518 aa11.79□□□□□ -0.52
SYNE1-214ENST00000454018 AXIN2Q9Y2T1 843 aa11.79□□□□□ -0.52
SYNE1-214ENST00000454018 VIRMAQ69YN4 1812 aaKnown RBP11.78□□□□□ -0.52
SYNE1-214ENST00000454018 PRR29P0C7W0 189 aa11.78□□□□□ -0.52
SYNE1-214ENST00000454018 NEUROD2Q15784 382 aa11.78□□□□□ -0.52
SYNE1-214ENST00000454018 HSP90AB2PQ58FF8 381 aa11.78□□□□□ -0.52
SYNE1-214ENST00000454018 ZNF772Q68DY9 489 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-214ENST00000454018 CFAP53Q96M91 514 aa11.78□□□□□ -0.52
SYNE1-214ENST00000454018 USP21Q9UK80 565 aa11.78□□□□□ -0.52
SYNE1-214ENST00000454018 THSD7AQ9UPZ6 1657 aa11.78□□□□□ -0.52
SYNE1-214ENST00000454018 PKD1L3Q7Z443 1732 aa11.78□□□□□ -0.52
SYNE1-214ENST00000454018 NCAPD2Q15021 1401 aa11.77□□□□□ -0.52
SYNE1-214ENST00000454018 ANKRD24Q8TF21 1146 aa11.77□□□□□ -0.52
SYNE1-214ENST00000454018 CLEC11AQ9Y240 323 aa11.77□□□□□ -0.52
SYNE1-214ENST00000454018 LRRC37A3O60309 1634 aa11.77□□□□□ -0.53
SYNE1-214ENST00000454018 SHANK3Q9BYB0 1731 aa11.77□□□□□ -0.53
SYNE1-214ENST00000454018 BRWD3Q6RI45 1802 aa11.76□□□□□ -0.53
SYNE1-214ENST00000454018 EVA1CP58658 441 aa11.76□□□□□ -0.53
SYNE1-214ENST00000454018 STRN4Q9NRL3 753 aa11.76□□□□□ -0.53
SYNE1-214ENST00000454018 CSB-PGBD3P0DP91 1061 aa11.76□□□□□ -0.53
SYNE1-214ENST00000454018 VPS72Q15906 364 aa11.76□□□□□ -0.53
SYNE1-214ENST00000454018 TRPC5Q9UL62 973 aaPredicted RBP11.76□□□□□ -0.53
SYNE1-214ENST00000454018 EIF4A2Q14240 407 aaKnown RBP11.75□□□□□ -0.53
SYNE1-214ENST00000454018 LARP1Q6PKG0 1096 aaKnown RBP11.75□□□□□ -0.53
SYNE1-214ENST00000454018 TOM1L2Q6ZVM7 507 aa11.75□□□□□ -0.53
SYNE1-214ENST00000454018 SLC24A3Q9HC58 644 aa11.75□□□□□ -0.53
SYNE1-214ENST00000454018 DIAPH1O60610 1272 aaKnown RBP11.74□□□□□ -0.53
SYNE1-214ENST00000454018 LTV1Q96GA3 475 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-214ENST00000454018 SPATA31A5Q5VU36 1347 aa11.74□□□□□ -0.53
SYNE1-214ENST00000454018 SPATA31A7Q8IWB4 1347 aa11.74□□□□□ -0.53
SYNE1-214ENST00000454018 PLEKHG2Q9H7P9 1386 aa11.74□□□□□ -0.53
SYNE1-214ENST00000454018 CARD10Q9BWT7 1032 aa11.73□□□□□ -0.53
SYNE1-214ENST00000454018 NLRP2Q9NX02 1062 aa11.73□□□□□ -0.53
SYNE1-214ENST00000454018 SPATA31A1Q5TZJ5 1347 aa11.73□□□□□ -0.53
SYNE1-214ENST00000454018 IGSF1Q8N6C5 1336 aa11.73□□□□□ -0.53
SYNE1-214ENST00000454018 DLG5Q8TDM6 1919 aa11.73□□□□□ -0.53
SYNE1-214ENST00000454018 DISP2A7MBM2 1401 aa11.72□□□□□ -0.53
SYNE1-214ENST00000454018 KDRP35968 1356 aa11.72□□□□□ -0.53
SYNE1-214ENST00000454018 IL13P35225 146 aa11.72□□□□□ -0.53
SYNE1-214ENST00000454018 ARHGEF1Q92888 912 aaKnown RBP11.72□□□□□ -0.53
SYNE1-214ENST00000454018 THRAP3Q9Y2W1 955 aaKnown RBP11.72□□□□□ -0.53
SYNE1-214ENST00000454018 CCDC9Q9Y3X0 531 aaKnown RBP11.72□□□□□ -0.53
SYNE1-214ENST00000454018 GJD4Q96KN9 370 aaPredicted RBP11.71□□□□□ -0.53
SYNE1-214ENST00000454018 RGS17Q9UGC6 210 aaPredicted RBP11.71□□□□□ -0.53
SYNE1-214ENST00000454018 NUDCQ9Y266 331 aa11.71□□□□□ -0.53
SYNE1-214ENST00000454018 MEGF6O75095 1541 aa11.71□□□□□ -0.54
SYNE1-214ENST00000454018 TCP11L2Q8N4U5 519 aa11.7□□□□□ -0.54
SYNE1-214ENST00000454018 EYA1Q99502 592 aa11.7□□□□□ -0.54
SYNE1-214ENST00000454018 QTRT2Q9H974 415 aaKnown RBP11.7□□□□□ -0.54
SYNE1-214ENST00000454018 OVOS2A0A0G2JMS6 1433 aa11.7□□□□□ -0.54
SYNE1-214ENST00000454018 TNS2Q63HR2 1409 aa11.7□□□□□ -0.54
SYNE1-214ENST00000454018 KAT6BQ8WYB5 2073 aa11.7□□□□□ -0.54
SYNE1-214ENST00000454018 RBM6P78332 1123 aaKnown RBP11.7□□□□□ -0.54
SYNE1-214ENST00000454018 NBPF6Q5VWK0 638 aa11.7□□□□□ -0.54
SYNE1-214ENST00000454018 BARGINQ6ZT62 677 aa11.7□□□□□ -0.54
SYNE1-214ENST00000454018 NBPF4Q96M43 638 aa11.7□□□□□ -0.54
SYNE1-214ENST00000454018 USP35Q9P2H5 1018 aa11.7□□□□□ -0.54
SYNE1-214ENST00000454018 SEMA3EO15041 775 aa11.69□□□□□ -0.54
SYNE1-214ENST00000454018 CDCA7Q9BWT1 371 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-214ENST00000454018 MRS2Q9HD23 443 aa11.69□□□□□ -0.54
SYNE1-214ENST00000454018 SBF2Q86WG5 1849 aa11.69□□□□□ -0.54
SYNE1-214ENST00000454018 SCN11AQ9UI33 1791 aa11.68□□□□□ -0.54
SYNE1-214ENST00000454018 CCER2I3L3R5 266 aa11.68□□□□□ -0.54
SYNE1-214ENST00000454018 U2SURPO15042 1029 aaKnown RBP11.68□□□□□ -0.54
SYNE1-214ENST00000454018 MFRPQ9BY79 579 aa11.68□□□□□ -0.54
SYNE1-214ENST00000454018 RGS12O14924 1447 aa11.68□□□□□ -0.54
SYNE1-214ENST00000454018 TESPA1A2RU30 521 aaPredicted RBP11.67□□□□□ -0.54
SYNE1-214ENST00000454018 IL2RBP14784 551 aa11.67□□□□□ -0.54
SYNE1-214ENST00000454018 RXRBP28702 533 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms