RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 MCM6Q14566 821 aa8.29□□□□□ -1.08
USP40-209ENST00000452724 LYSMD3Q7Z3D4 306 aa8.29□□□□□ -1.08
USP40-209ENST00000452724 SLC35F4A4IF30 521 aa8.28□□□□□ -1.08
USP40-209ENST00000452724 MEN1O00255 615 aa8.28□□□□□ -1.08
USP40-209ENST00000452724 MYCP01106 439 aaPredicted RBP8.28□□□□□ -1.08
USP40-209ENST00000452724 GPC1P35052 558 aa8.28□□□□□ -1.08
USP40-209ENST00000452724 RNF144AP50876 292 aaPredicted RBP8.28□□□□□ -1.08
USP40-209ENST00000452724 KDF1Q8NAX2 398 aaPredicted RBP8.28□□□□□ -1.08
USP40-209ENST00000452724 NLRP3Q96P20 1036 aa8.28□□□□□ -1.08
USP40-209ENST00000452724 CEP126Q9P2H0 1117 aa8.28□□□□□ -1.08
USP40-209ENST00000452724 FOXD4L5Q5VV16 416 aaPredicted RBP8.27□□□□□ -1.09
USP40-209ENST00000452724 NANOS1Q8WY41 292 aaKnown RBP8.27□□□□□ -1.09
USP40-209ENST00000452724 ITGA6P23229 1130 aa8.26□□□□□ -1.09
USP40-209ENST00000452724 WASHC4Q2M389 1173 aa8.26□□□□□ -1.09
USP40-209ENST00000452724 A0A1W2PRU2 124 aa8.25□□□□□ -1.09
USP40-209ENST00000452724 ABL2P42684 1182 aa8.25□□□□□ -1.09
USP40-209ENST00000452724 SLFNL1Q499Z3 407 aa8.25□□□□□ -1.09
USP40-209ENST00000452724 GDPD2Q9HCC8 539 aa8.25□□□□□ -1.09
USP40-209ENST00000452724 CDC14CA4D256 554 aa8.24□□□□□ -1.09
USP40-209ENST00000452724 SCTRP47872 440 aa8.24□□□□□ -1.09
USP40-209ENST00000452724 CLN3Q13286 438 aa8.24□□□□□ -1.09
USP40-209ENST00000452724 SLC27A3Q5K4L6 730 aa8.24□□□□□ -1.09
USP40-209ENST00000452724 SV2AQ7L0J3 742 aa8.24□□□□□ -1.09
USP40-209ENST00000452724 PRICKLE2Q7Z3G6 844 aa8.24□□□□□ -1.09
USP40-209ENST00000452724 WWC1Q8IX03 1113 aa8.24□□□□□ -1.09
USP40-209ENST00000452724 GNRH1P01148 92 aa8.23□□□□□ -1.09
USP40-209ENST00000452724 IRF5Q13568 498 aa8.23□□□□□ -1.09
USP40-209ENST00000452724 ERICH6Q7L0X2 663 aa8.23□□□□□ -1.09
USP40-209ENST00000452724 C14orf37Q86TY3 774 aa8.23□□□□□ -1.09
USP40-209ENST00000452724 RNF135Q8IUD6 432 aa8.23□□□□□ -1.09
USP40-209ENST00000452724 SIRT1Q96EB6 747 aa8.23□□□□□ -1.09
USP40-209ENST00000452724 OSBPL3Q9H4L5 887 aa8.23□□□□□ -1.09
USP40-209ENST00000452724 TRAK2O60296 914 aa8.22□□□□□ -1.09
USP40-209ENST00000452724 UBTFP17480 764 aaKnown RBP8.22□□□□□ -1.09
USP40-209ENST00000452724 SOX11P35716 441 aa8.22□□□□□ -1.09
USP40-209ENST00000452724 VAC14Q08AM6 782 aa8.22□□□□□ -1.09
USP40-209ENST00000452724 USP4Q13107 963 aa8.22□□□□□ -1.09
USP40-209ENST00000452724 ARHGEF10LQ9HCE6 1279 aa8.22□□□□□ -1.09
USP40-209ENST00000452724 DOLKQ9UPQ8 538 aa8.22□□□□□ -1.09
USP40-209ENST00000452724 SEMA3FQ13275 785 aa8.21□□□□□ -1.1
USP40-209ENST00000452724 VWA5B2Q8N398 1253 aa8.21□□□□□ -1.1
USP40-209ENST00000452724 CCDC85AQ96PX6 553 aaPredicted RBP8.21□□□□□ -1.1
USP40-209ENST00000452724 SENP3-EIF4A1A0A087X0R7 540 aa8.2□□□□□ -1.1
USP40-209ENST00000452724 RHOQP17081 205 aa8.2□□□□□ -1.1
USP40-209ENST00000452724 GTF2E1P29083 439 aaPredicted RBP8.2□□□□□ -1.1
USP40-209ENST00000452724 ESCO1Q5FWF5 840 aa8.2□□□□□ -1.1
USP40-209ENST00000452724 GMCL1Q96IK5 515 aa8.2□□□□□ -1.1
USP40-209ENST00000452724 CNTNAP3BQ96NU0 1288 aa8.2□□□□□ -1.1
USP40-209ENST00000452724 COL25A1Q9BXS0 654 aaPredicted RBP8.2□□□□□ -1.1
USP40-209ENST00000452724 CNTNAP3Q9BZ76 1288 aa8.2□□□□□ -1.1
USP40-209ENST00000452724 TIMELESSQ9UNS1 1208 aa8.2□□□□□ -1.1
USP40-209ENST00000452724 FOXR1Q6PIV2 292 aa8.19□□□□□ -1.1
USP40-209ENST00000452724 GPR161Q8N6U8 529 aaKnown RBP8.19□□□□□ -1.1
USP40-209ENST00000452724 RAD21O60216 631 aa8.18□□□□□ -1.1
USP40-209ENST00000452724 LORP23490 312 aaPredicted RBP8.18□□□□□ -1.1
USP40-209ENST00000452724 WDR44Q5JSH3 913 aa8.18□□□□□ -1.1
USP40-209ENST00000452724 CNKSR1Q969H4 720 aa8.18□□□□□ -1.1
USP40-209ENST00000452724 ESYT1Q9BSJ8 1104 aa8.18□□□□□ -1.1
USP40-209ENST00000452724 CDCA7Q9BWT1 371 aaPredicted RBP8.18□□□□□ -1.1
USP40-209ENST00000452724 GRIP2Q9C0E4 1043 aa8.18□□□□□ -1.1
USP40-209ENST00000452724 DYRK1BQ9Y463 629 aa8.18□□□□□ -1.1
USP40-209ENST00000452724 H7C1W4 665 aa8.17□□□□□ -1.1
USP40-209ENST00000452724 POU4F2Q12837 409 aa8.17□□□□□ -1.1
USP40-209ENST00000452724 MAP7D1Q3KQU3 841 aa8.17□□□□□ -1.1
USP40-209ENST00000452724 OXLD1Q5BKU9 147 aa8.17□□□□□ -1.1
USP40-209ENST00000452724 RIPOR1Q6ZS17 1223 aa8.17□□□□□ -1.1
USP40-209ENST00000452724 TAS1R3Q7RTX0 852 aa8.17□□□□□ -1.1
USP40-209ENST00000452724 PHTF2Q8N3S3 785 aa8.17□□□□□ -1.1
USP40-209ENST00000452724 POM121Q96HA1 1249 aa8.17□□□□□ -1.1
USP40-209ENST00000452724 RAB6BQ9NRW1 208 aa8.17□□□□□ -1.1
USP40-209ENST00000452724 COG6Q9Y2V7 657 aa8.17□□□□□ -1.1
USP40-209ENST00000452724 SPATA31C2B4DYI2 1134 aa8.16□□□□□ -1.1
USP40-209ENST00000452724 NBPF10Q6P3W6 841 aaKnown RBP8.16□□□□□ -1.1
USP40-209ENST00000452724 TRIM22Q8IYM9 498 aa8.16□□□□□ -1.1
USP40-209ENST00000452724 NBPF15Q8N660 670 aa8.16□□□□□ -1.1
USP40-209ENST00000452724 CLUAP1Q96AJ1 413 aa8.16□□□□□ -1.1
USP40-209ENST00000452724 WASLO00401 505 aaPredicted RBP8.15□□□□□ -1.1
USP40-209ENST00000452724 KRT76Q01546 638 aa8.15□□□□□ -1.1
USP40-209ENST00000452724 CENPCQ03188 943 aa8.15□□□□□ -1.1
USP40-209ENST00000452724 GNASQ5JWF2 1037 aa8.15□□□□□ -1.1
USP40-209ENST00000452724 ZSCAN10Q96SZ4 725 aaPredicted RBP8.15□□□□□ -1.1
USP40-209ENST00000452724 GAS2L1Q99501 681 aaPredicted RBP8.15□□□□□ -1.1
USP40-209ENST00000452724 TIMMDC1Q9NPL8 285 aa8.15□□□□□ -1.1
USP40-209ENST00000452724 IL2RAP01589 272 aa8.14□□□□□ -1.11
USP40-209ENST00000452724 TMEM214Q6NUQ4 689 aaKnown RBP8.14□□□□□ -1.11
USP40-209ENST00000452724 PLPP7Q8NBV4 271 aa8.14□□□□□ -1.11
USP40-209ENST00000452724 XAGE2Q96GT9 111 aa8.14□□□□□ -1.11
USP40-209ENST00000452724 ZMYND15Q9H091 742 aa8.14□□□□□ -1.11
USP40-209ENST00000452724 CHIC2Q9UKJ5 165 aa8.14□□□□□ -1.11
USP40-209ENST00000452724 A6NJR5 290 aa8.13□□□□□ -1.11
USP40-209ENST00000452724 RNFT1Q5M7Z0 435 aa8.13□□□□□ -1.11
USP40-209ENST00000452724 TRERF1Q96PN7 1200 aa8.13□□□□□ -1.11
USP40-209ENST00000452724 F11P03951 625 aa8.12□□□□□ -1.11
USP40-209ENST00000452724 TSGA10IPQ3SY00 556 aa8.12□□□□□ -1.11
USP40-209ENST00000452724 ZNF837Q96EG3 531 aaPredicted RBP8.12□□□□□ -1.11
USP40-209ENST00000452724 CUEDC1Q9NWM3 386 aaPredicted RBP8.12□□□□□ -1.11
USP40-209ENST00000452724 PROSER2Q86WR7 435 aaPredicted RBP8.11□□□□□ -1.11
USP40-209ENST00000452724 SVOPQ8N4V2 548 aa8.11□□□□□ -1.11
USP40-209ENST00000452724 A0A1B0GTH6 734 aa8.1□□□□□ -1.11
USP40-209ENST00000452724 LZTS3O60299 673 aaPredicted RBP8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms