RNA–Protein interactions for RNA: ENST00000452143.5

USP1-204, Transcript of ubiquitin specific peptidase 1, humanhuman

TSL 3

Gene USP1, Length 893 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-204ENST00000452143 COL24A1Q17RW2 1714 aa15.3■□□□□ 0.04
USP1-204ENST00000452143 TUBGCP6Q96RT7 1819 aa15.29■□□□□ 0.04
USP1-204ENST00000452143 USP47Q96K76 1375 aa15.29■□□□□ 0.04
USP1-204ENST00000452143 MEGF6O75095 1541 aa15.28■□□□□ 0.04
USP1-204ENST00000452143 SMG6Q86US8 1419 aaKnown RBP15.28■□□□□ 0.04
USP1-204ENST00000452143 MAP3K5Q99683 1374 aa15.28■□□□□ 0.04
USP1-204ENST00000452143 CAPN15O75808 1086 aa15.28■□□□□ 0.04
USP1-204ENST00000452143 SLC27A3Q5K4L6 730 aa15.28■□□□□ 0.04
USP1-204ENST00000452143 SGIP1Q9BQI5 828 aa15.28■□□□□ 0.04
USP1-204ENST00000452143 ATF5Q9Y2D1 282 aaPredicted RBP15.28■□□□□ 0.04
USP1-204ENST00000452143 CHD4Q14839 1912 aa15.27■□□□□ 0.04
USP1-204ENST00000452143 AMPHP49418 695 aa15.27■□□□□ 0.04
USP1-204ENST00000452143 TMF1P82094 1093 aa15.27■□□□□ 0.04
USP1-204ENST00000452143 LTV1Q96GA3 475 aaPredicted RBP15.27■□□□□ 0.04
USP1-204ENST00000452143 U3KPZ7 1027 aaPredicted RBP15.26■□□□□ 0.03
USP1-204ENST00000452143 KIF24Q5T7B8 1368 aa15.25■□□□□ 0.03
USP1-204ENST00000452143 CGNL1Q0VF96 1302 aa15.25■□□□□ 0.03
USP1-204ENST00000452143 ZNF827Q17R98 1081 aa15.25■□□□□ 0.03
USP1-204ENST00000452143 DDX54Q8TDD1 881 aaKnown RBP15.25■□□□□ 0.03
USP1-204ENST00000452143 SYT17Q9BSW7 474 aa15.25■□□□□ 0.03
USP1-204ENST00000452143 FHDC1Q9C0D6 1143 aaPredicted RBP15.25■□□□□ 0.03
USP1-204ENST00000452143 LRRC4BQ9NT99 713 aa15.25■□□□□ 0.03
USP1-204ENST00000452143 ANKRD26Q9UPS8 1709 aa15.25■□□□□ 0.03
USP1-204ENST00000452143 NSD2O96028 1365 aa15.24■□□□□ 0.03
USP1-204ENST00000452143 CDCA8Q53HL2 280 aa15.24■□□□□ 0.03
USP1-204ENST00000452143 AKT1S1Q96B36 256 aa15.24■□□□□ 0.03
USP1-204ENST00000452143 FYB1O15117 783 aa15.23■□□□□ 0.03
USP1-204ENST00000452143 NPM3O75607 178 aaKnown RBP15.23■□□□□ 0.03
USP1-204ENST00000452143 ZCRB1Q8TBF4 217 aaKnown RBP15.23■□□□□ 0.03
USP1-204ENST00000452143 SLC16A10Q8TF71 515 aa15.23■□□□□ 0.03
USP1-204ENST00000452143 ARXQ96QS3 562 aa15.23■□□□□ 0.03
USP1-204ENST00000452143 FLT4P35916 1363 aa15.23■□□□□ 0.03
USP1-204ENST00000452143 C5P01031 1676 aa15.22■□□□□ 0.03
USP1-204ENST00000452143 SYTL4Q96C24 671 aaPredicted RBP15.22■□□□□ 0.03
USP1-204ENST00000452143 SPINK5Q9NQ38 1064 aaPredicted RBP15.22■□□□□ 0.03
USP1-204ENST00000452143 PKD1L3Q7Z443 1732 aa15.22■□□□□ 0.03
USP1-204ENST00000452143 INSRP06213 1382 aa15.22■□□□□ 0.03
USP1-204ENST00000452143 GOLGB1Q14789 3259 aaKnown RBP15.21■□□□□ 0.03
USP1-204ENST00000452143 FBLN1P23142 703 aa15.21■□□□□ 0.03
USP1-204ENST00000452143 PRIM1P49642 420 aaKnown RBP15.21■□□□□ 0.03
USP1-204ENST00000452143 TRIM26Q12899 539 aaPredicted RBP15.21■□□□□ 0.03
USP1-204ENST00000452143 RRS1Q15050 365 aaKnown RBP15.21■□□□□ 0.03
USP1-204ENST00000452143 GGNBP2Q9H3C7 697 aa15.21■□□□□ 0.03
USP1-204ENST00000452143 PNPLA7Q6ZV29 1317 aa15.2■□□□□ 0.02
USP1-204ENST00000452143 NBPF6Q5VWK0 638 aa15.2■□□□□ 0.02
USP1-204ENST00000452143 RAPGEF4Q8WZA2 1011 aa15.2■□□□□ 0.02
USP1-204ENST00000452143 NBPF4Q96M43 638 aa15.2■□□□□ 0.02
USP1-204ENST00000452143 TAF1LQ8IZX4 1826 aa15.2■□□□□ 0.02
USP1-204ENST00000452143 PCDH11XQ9BZA7 1347 aa15.18■□□□□ 0.02
USP1-204ENST00000452143 PCDH11YQ9BZA8 1340 aa15.18■□□□□ 0.02
USP1-204ENST00000452143 TOGARAM1Q9Y4F4 1720 aa15.18■□□□□ 0.02
USP1-204ENST00000452143 ITGB4P16144 1822 aa15.18■□□□□ 0.02
USP1-204ENST00000452143 POLD1P28340 1107 aa15.18■□□□□ 0.02
USP1-204ENST00000452143 TFCP2L1Q9NZI6 479 aa15.18■□□□□ 0.02
USP1-204ENST00000452143 NCAPD2Q15021 1401 aa15.17■□□□□ 0.02
USP1-204ENST00000452143 NSD3Q9BZ95 1437 aa15.17■□□□□ 0.02
USP1-204ENST00000452143 TATP17735 454 aaPredicted RBP15.17■□□□□ 0.02
USP1-204ENST00000452143 HMGB2P26583 209 aaKnown RBP15.17■□□□□ 0.02
USP1-204ENST00000452143 CCNL1Q9UK58 526 aaPredicted RBP15.17■□□□□ 0.02
USP1-204ENST00000452143 TIMELESSQ9UNS1 1208 aa15.17■□□□□ 0.02
USP1-204ENST00000452143 USHBP1Q8N6Y0 703 aa15.16■□□□□ 0.02
USP1-204ENST00000452143 MAP2P11137 1827 aaKnown RBP15.15■□□□□ 0.02
USP1-204ENST00000452143 HSP90AB2PQ58FF8 381 aa15.15■□□□□ 0.02
USP1-204ENST00000452143 ZNF784Q8NCA9 323 aaPredicted RBP15.14■□□□□ 0.01
USP1-204ENST00000452143 CLSPNQ9HAW4 1339 aa15.14■□□□□ 0.01
USP1-204ENST00000452143 C4BP0C0L5 1744 aa15.13■□□□□ 0.01
USP1-204ENST00000452143 KCNQ4P56696 695 aa15.13■□□□□ 0.01
USP1-204ENST00000452143 PALLDQ8WX93 1383 aa15.12■□□□□ 0.01
USP1-204ENST00000452143 CARD14Q9BXL6 1004 aa15.12■□□□□ 0.01
USP1-204ENST00000452143 PLEKHG2Q9H7P9 1386 aa15.11■□□□□ 0.01
USP1-204ENST00000452143 EMILIN1Q9Y6C2 1016 aa15.11■□□□□ 0.01
USP1-204ENST00000452143 UBR3Q6ZT12 1888 aa15.11■□□□□ 0.01
USP1-204ENST00000452143 CYP27B1O15528 508 aa15.1■□□□□ 0.01
USP1-204ENST00000452143 GPR162Q16538 588 aa15.1■□□□□ 0.01
USP1-204ENST00000452143 KLHL34Q8N239 644 aa15.1■□□□□ 0.01
USP1-204ENST00000452143 FLAD1Q8NFF5 587 aa15.09■□□□□ 0.01
USP1-204ENST00000452143 SMARCC1Q92922 1105 aaPredicted RBP15.09■□□□□ 0.01
USP1-204ENST00000452143 WASHC2AQ641Q2 1341 aa15.09■□□□□ 0.01
USP1-204ENST00000452143 MPRIPQ6WCQ1 1025 aa15.08■□□□□ 0
USP1-204ENST00000452143 COL23A1Q86Y22 540 aaPredicted RBP15.08■□□□□ 0
USP1-204ENST00000452143 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.08■□□□□ 03e-7■■■□□ 15.5
USP1-204ENST00000452143 NKX1-1Q15270 411 aaPredicted RBP15.07■□□□□ 0
USP1-204ENST00000452143 SPG7Q9UQ90 795 aa15.07■□□□□ 0
USP1-204ENST00000452143 PPM1GO15355 546 aaPredicted RBP15.06■□□□□ 0
USP1-204ENST00000452143 NLGN2Q8NFZ4 835 aa15.06■□□□□ 0
USP1-204ENST00000452143 ZNF831Q5JPB2 1677 aa15.05■□□□□ -0
USP1-204ENST00000452143 AK7Q96M32 723 aa15.04■□□□□ -0
USP1-204ENST00000452143 GRIN3BO60391 1043 aa15.03■□□□□ -0
USP1-204ENST00000452143 PELP1Q8IZL8 1130 aaKnown RBP15.03■□□□□ -0
USP1-204ENST00000452143 PIGBQ92521 554 aa15.03■□□□□ -0
USP1-204ENST00000452143 EYA1Q99502 592 aa15.03■□□□□ -0
USP1-204ENST00000452143 POLKQ9UBT6 870 aa15.03■□□□□ -0
USP1-204ENST00000452143 CD2APQ9Y5K6 639 aa15.03■□□□□ -0
USP1-204ENST00000452143 MSL1Q68DK7 614 aa15.02■□□□□ -0
USP1-204ENST00000452143 TMOD3Q9NYL9 352 aa15.02■□□□□ -0
USP1-204ENST00000452143 SSFA2P28290 1259 aa15.01□□□□□ -0.01
USP1-204ENST00000452143 IFNL2Q8IZJ0 200 aa15.01□□□□□ -0.01
USP1-204ENST00000452143 COL5A3P25940 1745 aaPredicted RBP15□□□□□ -0.01
USP1-204ENST00000452143 IGSF1Q8N6C5 1336 aa15□□□□□ -0.01
USP1-204ENST00000452143 LOC102724428A0A0B4J2F2 783 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms