RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 GPR162Q16538 588 aa18.51■□□□□ 0.55
HMGB3-204ENST00000448905 NBPF6Q5VWK0 638 aa18.51■□□□□ 0.55
HMGB3-204ENST00000448905 NBPF4Q96M43 638 aa18.51■□□□□ 0.55
HMGB3-204ENST00000448905 CCNL1Q9UK58 526 aaPredicted RBP18.5■□□□□ 0.55
HMGB3-204ENST00000448905 NHSQ6T4R5 1651 aa18.5■□□□□ 0.55
HMGB3-204ENST00000448905 LTN1O94822 1766 aa18.5■□□□□ 0.55
HMGB3-204ENST00000448905 MSH5O43196 834 aa18.49■□□□□ 0.55
HMGB3-204ENST00000448905 SMG6Q86US8 1419 aaKnown RBP18.49■□□□□ 0.55
HMGB3-204ENST00000448905 RTL1A6NKG5 1358 aa18.48■□□□□ 0.55
HMGB3-204ENST00000448905 KLHL34Q8N239 644 aa18.48■□□□□ 0.55
HMGB3-204ENST00000448905 ZNF784Q8NCA9 323 aaPredicted RBP18.48■□□□□ 0.55
HMGB3-204ENST00000448905 BTAF1O14981 1849 aa18.48■□□□□ 0.55
HMGB3-204ENST00000448905 USP47Q96K76 1375 aa18.47■□□□□ 0.55
HMGB3-204ENST00000448905 KCNQ4P56696 695 aa18.47■□□□□ 0.55
HMGB3-204ENST00000448905 TIMELESSQ9UNS1 1208 aa18.47■□□□□ 0.55
HMGB3-204ENST00000448905 MAP3K5Q99683 1374 aa18.46■□□□□ 0.55
HMGB3-204ENST00000448905 HSP90AB2PQ58FF8 381 aa18.46■□□□□ 0.55
HMGB3-204ENST00000448905 USHBP1Q8N6Y0 703 aa18.46■□□□□ 0.55
HMGB3-204ENST00000448905 PNPLA7Q6ZV29 1317 aa18.46■□□□□ 0.55
HMGB3-204ENST00000448905 FLAD1Q8NFF5 587 aa18.44■□□□□ 0.54
HMGB3-204ENST00000448905 PCDH11XQ9BZA7 1347 aa18.44■□□□□ 0.54
HMGB3-204ENST00000448905 PCDH11YQ9BZA8 1340 aa18.44■□□□□ 0.54
HMGB3-204ENST00000448905 INSRP06213 1382 aa18.43■□□□□ 0.54
HMGB3-204ENST00000448905 PAPPAQ13219 1627 aa18.43■□□□□ 0.54
HMGB3-204ENST00000448905 PPM1GO15355 546 aaPredicted RBP18.43■□□□□ 0.54
HMGB3-204ENST00000448905 PELP1Q8IZL8 1130 aaKnown RBP18.43■□□□□ 0.54
HMGB3-204ENST00000448905 KIF24Q5T7B8 1368 aa18.42■□□□□ 0.54
HMGB3-204ENST00000448905 USP54Q70EL1 1684 aa18.42■□□□□ 0.54
HMGB3-204ENST00000448905 MPRIPQ6WCQ1 1025 aa18.42■□□□□ 0.54
HMGB3-204ENST00000448905 SMARCC1Q92922 1105 aaPredicted RBP18.42■□□□□ 0.54
HMGB3-204ENST00000448905 SPG7Q9UQ90 795 aa18.41■□□□□ 0.54
HMGB3-204ENST00000448905 FLT4P35916 1363 aa18.41■□□□□ 0.54
HMGB3-204ENST00000448905 GRIN3BO60391 1043 aa18.4■□□□□ 0.54
HMGB3-204ENST00000448905 CARD14Q9BXL6 1004 aa18.4■□□□□ 0.54
HMGB3-204ENST00000448905 COL23A1Q86Y22 540 aaPredicted RBP18.39■□□□□ 0.53
HMGB3-204ENST00000448905 CHD4Q14839 1912 aa18.39■□□□□ 0.53
HMGB3-204ENST00000448905 RGPD2P0DJD1 1756 aa18.38■□□□□ 0.53
HMGB3-204ENST00000448905 NSD2O96028 1365 aa18.38■□□□□ 0.53
HMGB3-204ENST00000448905 UTRNP46939 3433 aa18.37■□□□□ 0.53
HMGB3-204ENST00000448905 MEGF6O75095 1541 aa18.37■□□□□ 0.53
HMGB3-204ENST00000448905 CYP27B1O15528 508 aa18.36■□□□□ 0.53
HMGB3-204ENST00000448905 EMILIN1Q9Y6C2 1016 aa18.36■□□□□ 0.53
HMGB3-204ENST00000448905 WASHC2AQ641Q2 1341 aa18.35■□□□□ 0.53
HMGB3-204ENST00000448905 AK7Q96M32 723 aa18.35■□□□□ 0.53
HMGB3-204ENST00000448905 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.35■□□□□ 0.53
HMGB3-204ENST00000448905 TUBGCP6Q96RT7 1819 aa18.35■□□□□ 0.53
HMGB3-204ENST00000448905 PALLDQ8WX93 1383 aa18.34■□□□□ 0.53
HMGB3-204ENST00000448905 NKX1-1Q15270 411 aaPredicted RBP18.34■□□□□ 0.53
HMGB3-204ENST00000448905 NLGN2Q8NFZ4 835 aa18.34■□□□□ 0.53
HMGB3-204ENST00000448905 POLR3GLQ9BT43 218 aa18.34■□□□□ 0.53
HMGB3-204ENST00000448905 CD2APQ9Y5K6 639 aa18.34■□□□□ 0.53
HMGB3-204ENST00000448905 SENP3-EIF4A1A0A087X0R7 540 aa18.33■□□□□ 0.52
HMGB3-204ENST00000448905 C1QTNF8P60827 252 aa18.33■□□□□ 0.52
HMGB3-204ENST00000448905 PIGBQ92521 554 aa18.33■□□□□ 0.52
HMGB3-204ENST00000448905 DOT1LQ8TEK3 1739 aa18.32■□□□□ 0.52
HMGB3-204ENST00000448905 MSL1Q68DK7 614 aa18.32■□□□□ 0.52
HMGB3-204ENST00000448905 NSD3Q9BZ95 1437 aa18.32■□□□□ 0.52
HMGB3-204ENST00000448905 IFNL2Q8IZJ0 200 aa18.31■□□□□ 0.52
HMGB3-204ENST00000448905 EYA1Q99502 592 aa18.31■□□□□ 0.52
HMGB3-204ENST00000448905 PCGF6Q9BYE7 350 aa18.31■□□□□ 0.52
HMGB3-204ENST00000448905 TMOD3Q9NYL9 352 aa18.31■□□□□ 0.52
HMGB3-204ENST00000448905 CLSPNQ9HAW4 1339 aa18.3■□□□□ 0.52
HMGB3-204ENST00000448905 SHANK3Q9BYB0 1731 aa18.3■□□□□ 0.52
HMGB3-204ENST00000448905 POLKQ9UBT6 870 aa18.3■□□□□ 0.52
HMGB3-204ENST00000448905 FAM208AQ9UK61 1670 aaKnown RBP18.3■□□□□ 0.52
HMGB3-204ENST00000448905 QSER1Q2KHR3 1735 aa18.29■□□□□ 0.52
HMGB3-204ENST00000448905 GIGYF1O75420 1035 aaPredicted RBP18.29■□□□□ 0.52
HMGB3-204ENST00000448905 LY75O60449 1722 aa18.29■□□□□ 0.52
HMGB3-204ENST00000448905 LOC102724428A0A0B4J2F2 783 aa18.28■□□□□ 0.52
HMGB3-204ENST00000448905 SIK1P57059 783 aa18.28■□□□□ 0.52
HMGB3-204ENST00000448905 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.27■□□□□ 0.52
HMGB3-204ENST00000448905 PHF14O94880 888 aa18.27■□□□□ 0.52
HMGB3-204ENST00000448905 SSFA2P28290 1259 aa18.27■□□□□ 0.52
HMGB3-204ENST00000448905 TNNT2P45379 298 aaPredicted RBP18.27■□□□□ 0.52
HMGB3-204ENST00000448905 COL24A1Q17RW2 1714 aa18.26■□□□□ 0.51
HMGB3-204ENST00000448905 PHKG2P15735 406 aa18.26■□□□□ 0.51
HMGB3-204ENST00000448905 YBX3P16989 372 aaKnown RBP eCLIP18.26■□□□□ 0.51
HMGB3-204ENST00000448905 ATP6V1AP38606 617 aa18.26■□□□□ 0.51
HMGB3-204ENST00000448905 EIF4G2P78344 907 aaKnown RBP eCLIP18.26■□□□□ 0.51
HMGB3-204ENST00000448905 HSP90AB1P08238 724 aaKnown RBP18.25■□□□□ 0.51
HMGB3-204ENST00000448905 PLEKHO1Q53GL0 409 aaPredicted RBP18.24■□□□□ 0.51
HMGB3-204ENST00000448905 ASAP1Q9ULH1 1129 aa18.24■□□□□ 0.51
HMGB3-204ENST00000448905 ERVV-2B6SEH9 535 aa18.23■□□□□ 0.51
HMGB3-204ENST00000448905 EIF4A2Q14240 407 aaKnown RBP18.23■□□□□ 0.51
HMGB3-204ENST00000448905 SMIM5Q71RC9 77 aa18.23■□□□□ 0.51
HMGB3-204ENST00000448905 GNPATO15228 680 aa18.22■□□□□ 0.51
HMGB3-204ENST00000448905 AMOTQ4VCS5 1084 aa18.22■□□□□ 0.51
HMGB3-204ENST00000448905 PANK3Q9H999 370 aa18.22■□□□□ 0.51
HMGB3-204ENST00000448905 TRAPPC3LQ5T215 181 aa18.21■□□□□ 0.51
HMGB3-204ENST00000448905 LINC00116Q8NCU8 138 aa18.21■□□□□ 0.51
HMGB3-204ENST00000448905 DCAF5Q96JK2 942 aa18.21■□□□□ 0.51
HMGB3-204ENST00000448905 ATG3Q9NT62 314 aa18.21■□□□□ 0.51
HMGB3-204ENST00000448905 GOLGB1Q14789 3259 aaKnown RBP18.2■□□□□ 0.5
HMGB3-204ENST00000448905 MORC1Q86VD1 984 aa18.2■□□□□ 0.5
HMGB3-204ENST00000448905 NLGN1Q8N2Q7 840 aa18.2■□□□□ 0.5
HMGB3-204ENST00000448905 RBM42Q9BTD8 480 aaKnown RBP18.2■□□□□ 0.5
HMGB3-204ENST00000448905 RTCBQ9Y3I0 505 aaKnown RBP18.2■□□□□ 0.5
HMGB3-204ENST00000448905 WWC3Q9ULE0 1092 aa18.19■□□□□ 0.5
HMGB3-204ENST00000448905 NCAPD2Q15021 1401 aa18.18■□□□□ 0.5
HMGB3-204ENST00000448905 CABP4P57796 275 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms