RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 DDX54Q8TDD1 881 aaKnown RBP9.82□□□□□ -0.84
VPS41-208ENST00000448833 LTV1Q96GA3 475 aaPredicted RBP9.82□□□□□ -0.84
VPS41-208ENST00000448833 RGPD2P0DJD1 1756 aa9.81□□□□□ -0.84
VPS41-208ENST00000448833 CASZ1Q86V15 1759 aa9.81□□□□□ -0.84
VPS41-208ENST00000448833 ZCRB1Q8TBF4 217 aaKnown RBP9.81□□□□□ -0.84
VPS41-208ENST00000448833 RAPGEF4Q8WZA2 1011 aa9.81□□□□□ -0.84
VPS41-208ENST00000448833 PTF1AQ7RTS3 328 aa9.8□□□□□ -0.84
VPS41-208ENST00000448833 ACSBG1Q96GR2 724 aa9.8□□□□□ -0.84
VPS41-208ENST00000448833 MTFR1LQ9H019 292 aa9.8□□□□□ -0.84
VPS41-208ENST00000448833 GGNBP2Q9H3C7 697 aa9.8□□□□□ -0.84
VPS41-208ENST00000448833 MAP2P11137 1827 aaKnown RBP9.79□□□□□ -0.84
VPS41-208ENST00000448833 INSRP06213 1382 aa9.79□□□□□ -0.84
VPS41-208ENST00000448833 SLC16A10Q8TF71 515 aa9.79□□□□□ -0.84
VPS41-208ENST00000448833 PCGF6Q9BYE7 350 aa9.79□□□□□ -0.84
VPS41-208ENST00000448833 QSER1Q2KHR3 1735 aa9.79□□□□□ -0.84
VPS41-208ENST00000448833 FLT4P35916 1363 aa9.78□□□□□ -0.84
VPS41-208ENST00000448833 TATP17735 454 aaPredicted RBP9.78□□□□□ -0.84
VPS41-208ENST00000448833 ANO8Q9HCE9 1232 aaPredicted RBP9.78□□□□□ -0.84
VPS41-208ENST00000448833 ZBTB7AO95365 584 aa9.77□□□□□ -0.85
VPS41-208ENST00000448833 PRIM1P49642 420 aaKnown RBP9.77□□□□□ -0.85
VPS41-208ENST00000448833 RRS1Q15050 365 aaKnown RBP9.77□□□□□ -0.85
VPS41-208ENST00000448833 SYTL4Q96C24 671 aaPredicted RBP9.77□□□□□ -0.85
VPS41-208ENST00000448833 LY75O60449 1722 aa9.76□□□□□ -0.85
VPS41-208ENST00000448833 DOT1LQ8TEK3 1739 aa9.76□□□□□ -0.85
VPS41-208ENST00000448833 EIF4G2P78344 907 aaKnown RBP eCLIP9.76□□□□□ -0.85
VPS41-208ENST00000448833 NBPF6Q5VWK0 638 aa9.76□□□□□ -0.85
VPS41-208ENST00000448833 NBPF4Q96M43 638 aa9.76□□□□□ -0.85
VPS41-208ENST00000448833 ATF5Q9Y2D1 282 aaPredicted RBP9.76□□□□□ -0.85
VPS41-208ENST00000448833 MYOM1P52179 1685 aa9.76□□□□□ -0.85
VPS41-208ENST00000448833 PCDH11XQ9BZA7 1347 aa9.76□□□□□ -0.85
VPS41-208ENST00000448833 PCDH11YQ9BZA8 1340 aa9.76□□□□□ -0.85
VPS41-208ENST00000448833 MYCNP04198 464 aaPredicted RBP9.75□□□□□ -0.85
VPS41-208ENST00000448833 FBLN1P23142 703 aa9.75□□□□□ -0.85
VPS41-208ENST00000448833 PTGER2P43116 358 aa9.75□□□□□ -0.85
VPS41-208ENST00000448833 HSP90AB2PQ58FF8 381 aa9.75□□□□□ -0.85
VPS41-208ENST00000448833 CARD14Q9BXL6 1004 aa9.75□□□□□ -0.85
VPS41-208ENST00000448833 TFCP2L1Q9NZI6 479 aa9.75□□□□□ -0.85
VPS41-208ENST00000448833 CHD4Q14839 1912 aa9.75□□□□□ -0.85
VPS41-208ENST00000448833 SHANK3Q9BYB0 1731 aa9.75□□□□□ -0.85
VPS41-208ENST00000448833 PAPPAQ13219 1627 aa9.74□□□□□ -0.85
VPS41-208ENST00000448833 NSD3Q9BZ95 1437 aa9.74□□□□□ -0.85
VPS41-208ENST00000448833 YY1P25490 414 aa9.74□□□□□ -0.85
VPS41-208ENST00000448833 POLD1P28340 1107 aa9.74□□□□□ -0.85
VPS41-208ENST00000448833 ARXQ96QS3 562 aa9.74□□□□□ -0.85
VPS41-208ENST00000448833 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.74□□□□□ -0.857e-10■■■■■ 44.2
VPS41-208ENST00000448833 SPG7Q9UQ90 795 aa9.74□□□□□ -0.85
VPS41-208ENST00000448833 WASHC2AQ641Q2 1341 aa9.74□□□□□ -0.85
VPS41-208ENST00000448833 NSD2O96028 1365 aa9.74□□□□□ -0.85
VPS41-208ENST00000448833 ANKRD26Q9UPS8 1709 aa9.73□□□□□ -0.85
VPS41-208ENST00000448833 MEGF6O75095 1541 aa9.73□□□□□ -0.85
VPS41-208ENST00000448833 PPM1GO15355 546 aaPredicted RBP9.73□□□□□ -0.85
VPS41-208ENST00000448833 FLAD1Q8NFF5 587 aa9.73□□□□□ -0.85
VPS41-208ENST00000448833 CCER1Q8TC90 406 aaPredicted RBP9.73□□□□□ -0.85
VPS41-208ENST00000448833 SMARCC1Q92922 1105 aaPredicted RBP9.73□□□□□ -0.85
VPS41-208ENST00000448833 AKT1S1Q96B36 256 aa9.73□□□□□ -0.85
VPS41-208ENST00000448833 PDGFDQ9GZP0 370 aaPredicted RBP9.73□□□□□ -0.85
VPS41-208ENST00000448833 LRRC4BQ9NT99 713 aa9.73□□□□□ -0.85
VPS41-208ENST00000448833 CCNL1Q9UK58 526 aaPredicted RBP9.73□□□□□ -0.85
VPS41-208ENST00000448833 PLEKHG2Q9H7P9 1386 aa9.73□□□□□ -0.85
VPS41-208ENST00000448833 ITGB4P16144 1822 aa9.72□□□□□ -0.85
VPS41-208ENST00000448833 SYT17Q9BSW7 474 aa9.72□□□□□ -0.85
VPS41-208ENST00000448833 POLR3GLQ9BT43 218 aa9.72□□□□□ -0.85
VPS41-208ENST00000448833 FHDC1Q9C0D6 1143 aaPredicted RBP9.72□□□□□ -0.85
VPS41-208ENST00000448833 MAP3K5Q99683 1374 aa9.72□□□□□ -0.85
VPS41-208ENST00000448833 COL24A1Q17RW2 1714 aa9.71□□□□□ -0.85
VPS41-208ENST00000448833 PKD1L3Q7Z443 1732 aa9.71□□□□□ -0.85
VPS41-208ENST00000448833 USHBP1Q8N6Y0 703 aa9.71□□□□□ -0.86
VPS41-208ENST00000448833 SGIP1Q9BQI5 828 aa9.71□□□□□ -0.86
VPS41-208ENST00000448833 TAF1LQ8IZX4 1826 aa9.7□□□□□ -0.86
VPS41-208ENST00000448833 NKX1-1Q15270 411 aaPredicted RBP9.7□□□□□ -0.86
VPS41-208ENST00000448833 ZNF827Q17R98 1081 aa9.7□□□□□ -0.86
VPS41-208ENST00000448833 EMILIN1Q9Y6C2 1016 aa9.7□□□□□ -0.86
VPS41-208ENST00000448833 C5P01031 1676 aa9.7□□□□□ -0.86
VPS41-208ENST00000448833 TUBGCP6Q96RT7 1819 aa9.7□□□□□ -0.86
VPS41-208ENST00000448833 NCAPD2Q15021 1401 aa9.69□□□□□ -0.86
VPS41-208ENST00000448833 MPRIPQ6WCQ1 1025 aa9.69□□□□□ -0.86
VPS41-208ENST00000448833 PNPLA7Q6ZV29 1317 aa9.69□□□□□ -0.86
VPS41-208ENST00000448833 IFNL2Q8IZJ0 200 aa9.69□□□□□ -0.86
VPS41-208ENST00000448833 POLKQ9UBT6 870 aa9.69□□□□□ -0.86
VPS41-208ENST00000448833 CYP27B1O15528 508 aa9.68□□□□□ -0.86
VPS41-208ENST00000448833 HSP90AB1P08238 724 aaKnown RBP9.68□□□□□ -0.86
VPS41-208ENST00000448833 HSPA5P11021 654 aaKnown RBP9.68□□□□□ -0.86
VPS41-208ENST00000448833 EYA1Q99502 592 aa9.68□□□□□ -0.86
VPS41-208ENST00000448833 PANK3Q9H999 370 aa9.68□□□□□ -0.86
VPS41-208ENST00000448833 PALLDQ8WX93 1383 aa9.67□□□□□ -0.86
VPS41-208ENST00000448833 GPR162Q16538 588 aa9.67□□□□□ -0.86
VPS41-208ENST00000448833 TMOD3Q9NYL9 352 aa9.67□□□□□ -0.86
VPS41-208ENST00000448833 KNSTRNQ9Y448 316 aa9.67□□□□□ -0.86
VPS41-208ENST00000448833 TNNT2P45379 298 aaPredicted RBP9.66□□□□□ -0.86
VPS41-208ENST00000448833 KCNQ4P56696 695 aa9.66□□□□□ -0.86
VPS41-208ENST00000448833 AMOTQ4VCS5 1084 aa9.66□□□□□ -0.86
VPS41-208ENST00000448833 MORC1Q86VD1 984 aa9.66□□□□□ -0.86
VPS41-208ENST00000448833 AK7Q96M32 723 aa9.66□□□□□ -0.86
VPS41-208ENST00000448833 ERVV-2B6SEH9 535 aa9.65□□□□□ -0.86
VPS41-208ENST00000448833 GRIN3BO60391 1043 aa9.65□□□□□ -0.86
VPS41-208ENST00000448833 PHKG2P15735 406 aa9.65□□□□□ -0.86
VPS41-208ENST00000448833 EIF4A2Q14240 407 aaKnown RBP9.65□□□□□ -0.86
VPS41-208ENST00000448833 PLEKHO1Q53GL0 409 aaPredicted RBP9.65□□□□□ -0.86
VPS41-208ENST00000448833 PIGBQ92521 554 aa9.65□□□□□ -0.86
VPS41-208ENST00000448833 C4BP0C0L5 1744 aa9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms