RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 TERF2IPQ9NYB0 399 aa23.43■■□□□ 1.34
HMGA1-205ENST00000447654 CGNQ9P2M7 1197 aaKnown RBP23.43■■□□□ 1.34
HMGA1-205ENST00000447654 UVSSAQ2YD98 709 aa23.42■■□□□ 1.34
HMGA1-205ENST00000447654 ZKSCAN2Q63HK3 967 aa23.42■■□□□ 1.34
HMGA1-205ENST00000447654 ZNF771Q7L3S4 317 aaPredicted RBP23.42■■□□□ 1.34
HMGA1-205ENST00000447654 TXNDC2Q86VQ3 553 aa23.42■■□□□ 1.34
HMGA1-205ENST00000447654 TNRQ92752 1358 aa23.42■■□□□ 1.34
HMGA1-205ENST00000447654 FAM193AP78312 1265 aa23.41■■□□□ 1.34
HMGA1-205ENST00000447654 SYCP1Q15431 976 aa23.41■■□□□ 1.34
HMGA1-205ENST00000447654 CFAP44Q96MT7 982 aa23.41■■□□□ 1.34
HMGA1-205ENST00000447654 DZIP1LQ8IYY4 767 aaKnown RBP23.4■■□□□ 1.34
HMGA1-205ENST00000447654 CFAP53Q96M91 514 aa23.4■■□□□ 1.34
HMGA1-205ENST00000447654 DDX19BQ9UMR2 479 aa23.4■■□□□ 1.34
HMGA1-205ENST00000447654 CD2BP2O95400 341 aaKnown RBP23.4■■□□□ 1.34
HMGA1-205ENST00000447654 FBLN1P23142 703 aa23.4■■□□□ 1.34
HMGA1-205ENST00000447654 CEBPAP49715 358 aaPredicted RBP23.39■■□□□ 1.33
HMGA1-205ENST00000447654 NUCB1Q02818 461 aa23.39■■□□□ 1.33
HMGA1-205ENST00000447654 CCDC27Q2M243 656 aa23.39■■□□□ 1.33
HMGA1-205ENST00000447654 FAM184AQ8NB25 1140 aa23.39■■□□□ 1.33
HMGA1-205ENST00000447654 U2AF1L5P0DN76 240 aaPredicted RBP23.38■■□□□ 1.33
HMGA1-205ENST00000447654 U2AF1Q01081 240 aaKnown RBP eCLIP23.38■■□□□ 1.33
HMGA1-205ENST00000447654 COL3A1P02461 1466 aaPredicted RBP23.38■■□□□ 1.33
HMGA1-205ENST00000447654 CTIFO43310 598 aaKnown RBP23.38■■□□□ 1.33
HMGA1-205ENST00000447654 RABEP1Q15276 862 aa23.38■■□□□ 1.33
HMGA1-205ENST00000447654 GPT2Q8TD30 523 aa23.38■■□□□ 1.33
HMGA1-205ENST00000447654 NCKAP5LQ9HCH0 1330 aa23.38■■□□□ 1.33
HMGA1-205ENST00000447654 CHAF1AQ13111 956 aaPredicted RBP23.37■■□□□ 1.33
HMGA1-205ENST00000447654 TSPYL1Q9H0U9 437 aa23.37■■□□□ 1.33
HMGA1-205ENST00000447654 HDGFL2Q7Z4V5 671 aaPredicted RBP23.36■■□□□ 1.33
HMGA1-205ENST00000447654 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.36■■□□□ 1.33
HMGA1-205ENST00000447654 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.36■■□□□ 1.33
HMGA1-205ENST00000447654 UBR1Q8IWV7 1749 aa23.36■■□□□ 1.33
HMGA1-205ENST00000447654 ANKRD26Q9UPS8 1709 aa23.36■■□□□ 1.33
HMGA1-205ENST00000447654 KLHL34Q8N239 644 aa23.35■■□□□ 1.33
HMGA1-205ENST00000447654 FOXD4L1Q9NU39 408 aa23.35■■□□□ 1.33
HMGA1-205ENST00000447654 TMEM2Q9UHN6 1383 aa23.35■■□□□ 1.33
HMGA1-205ENST00000447654 IRX5P78411 483 aaPredicted RBP23.35■■□□□ 1.33
HMGA1-205ENST00000447654 CREBRFQ8IUR6 639 aa23.35■■□□□ 1.33
HMGA1-205ENST00000447654 TSPY26PQ9H489 355 aa23.35■■□□□ 1.33
HMGA1-205ENST00000447654 MED14O60244 1454 aa23.34■■□□□ 1.33
HMGA1-205ENST00000447654 SYAP1Q96A49 352 aaPredicted RBP23.34■■□□□ 1.33
HMGA1-205ENST00000447654 TMEM63CQ9P1W3 806 aa23.34■■□□□ 1.33
HMGA1-205ENST00000447654 TNNQ9UQP3 1299 aa23.34■■□□□ 1.33
HMGA1-205ENST00000447654 SYCE3A1L190 88 aa23.33■■□□□ 1.33
HMGA1-205ENST00000447654 SPDYE4A6NLX3 237 aa23.33■■□□□ 1.33
HMGA1-205ENST00000447654 WASLO00401 505 aaPredicted RBP23.33■■□□□ 1.33
HMGA1-205ENST00000447654 PRPF40AO75400 957 aaKnown RBP23.33■■□□□ 1.33
HMGA1-205ENST00000447654 LTKP29376 864 aa23.33■■□□□ 1.33
HMGA1-205ENST00000447654 PHF14O94880 888 aa23.33■■□□□ 1.32
HMGA1-205ENST00000447654 VGLL3A8MV65 326 aa23.32■■□□□ 1.32
HMGA1-205ENST00000447654 TSC1Q92574 1164 aa23.32■■□□□ 1.32
HMGA1-205ENST00000447654 TIGD1Q96MW7 591 aa23.32■■□□□ 1.32
HMGA1-205ENST00000447654 PLEKHF1Q96S99 279 aa23.32■■□□□ 1.32
HMGA1-205ENST00000447654 U2SURPO15042 1029 aaKnown RBP23.31■■□□□ 1.32
HMGA1-205ENST00000447654 TPM3P06753 285 aa23.31■■□□□ 1.32
HMGA1-205ENST00000447654 KIF20BQ96Q89 1820 aa23.31■■□□□ 1.32
HMGA1-205ENST00000447654 ADAMTS13Q76LX8 1427 aa23.3■■□□□ 1.32
HMGA1-205ENST00000447654 U2AF2P26368 475 aaKnown RBP eCLIP23.3■■□□□ 1.32
HMGA1-205ENST00000447654 CHD1LQ86WJ1 897 aa23.3■■□□□ 1.32
HMGA1-205ENST00000447654 RBM27Q9P2N5 1060 aaKnown RBP23.3■■□□□ 1.32
HMGA1-205ENST00000447654 AK9Q5TCS8 1911 aa23.29■■□□□ 1.32
HMGA1-205ENST00000447654 ADGRB2O60241 1585 aa23.29■■□□□ 1.32
HMGA1-205ENST00000447654 ZRANB1Q9UGI0 708 aa23.29■■□□□ 1.32
HMGA1-205ENST00000447654 ATP7BP35670 1465 aa23.29■■□□□ 1.32
HMGA1-205ENST00000447654 ROBO2Q9HCK4 1378 aa23.29■■□□□ 1.32
HMGA1-205ENST00000447654 SLFN14P0C7P3 912 aa23.28■■□□□ 1.32
HMGA1-205ENST00000447654 PLPPR3Q6T4P5 718 aa23.28■■□□□ 1.32
HMGA1-205ENST00000447654 JARID2Q92833 1246 aaPredicted RBP23.28■■□□□ 1.32
HMGA1-205ENST00000447654 TECPR2O15040 1411 aa23.28■■□□□ 1.32
HMGA1-205ENST00000447654 PPIP5K1Q6PFW1 1433 aa23.28■■□□□ 1.32
HMGA1-205ENST00000447654 CALCOCO1Q9P1Z2 691 aa23.28■■□□□ 1.32
HMGA1-205ENST00000447654 CPSF1Q10570 1443 aaKnown RBP23.28■■□□□ 1.32
HMGA1-205ENST00000447654 PNPLA6Q8IY17 1366 aa23.28■■□□□ 1.32
HMGA1-205ENST00000447654 KCNJ4P48050 445 aa23.27■■□□□ 1.32
HMGA1-205ENST00000447654 TULP2O00295 520 aa23.27■■□□□ 1.32
HMGA1-205ENST00000447654 NUDT16Q96DE0 195 aaKnown RBP23.27■■□□□ 1.32
HMGA1-205ENST00000447654 KNDC1Q76NI1 1749 aa23.26■■□□□ 1.31
HMGA1-205ENST00000447654 PRR36Q9H6K5 1346 aa23.26■■□□□ 1.31
HMGA1-205ENST00000447654 FAM135BQ49AJ0 1406 aa23.26■■□□□ 1.31
HMGA1-205ENST00000447654 TBC1D9Q6ZT07 1266 aa23.25■■□□□ 1.31
HMGA1-205ENST00000447654 NME9Q86XW9 330 aa23.25■■□□□ 1.31
HMGA1-205ENST00000447654 POLKQ9UBT6 870 aa23.25■■□□□ 1.31
HMGA1-205ENST00000447654 MORC2Q9Y6X9 1032 aaPredicted RBP23.25■■□□□ 1.31
HMGA1-205ENST00000447654 DDX41Q9UJV9 622 aaKnown RBP23.25■■□□□ 1.31
HMGA1-205ENST00000447654 CPS1P31327 1500 aa23.25■■□□□ 1.31
HMGA1-205ENST00000447654 ILDR1Q86SU0 546 aaPredicted RBP23.24■■□□□ 1.31
HMGA1-205ENST00000447654 TEX2Q8IWB9 1127 aa23.24■■□□□ 1.31
HMGA1-205ENST00000447654 ZBTB40Q9NUA8 1239 aa23.24■■□□□ 1.31
HMGA1-205ENST00000447654 CTNNA3Q9UI47 895 aa23.24■■□□□ 1.31
HMGA1-205ENST00000447654 HDGFP51858 240 aaKnown RBP23.24■■□□□ 1.31
HMGA1-205ENST00000447654 RBM42Q9BTD8 480 aaKnown RBP23.24■■□□□ 1.31
HMGA1-205ENST00000447654 RIOK3O14730 519 aaKnown RBP23.23■■□□□ 1.31
HMGA1-205ENST00000447654 TRIM35Q9UPQ4 493 aa23.23■■□□□ 1.31
HMGA1-205ENST00000447654 CDC45O75419 566 aa23.23■■□□□ 1.31
HMGA1-205ENST00000447654 CHRM1P11229 460 aaPredicted RBP23.23■■□□□ 1.31
HMGA1-205ENST00000447654 GCC1Q96CN9 775 aa23.23■■□□□ 1.31
HMGA1-205ENST00000447654 SIRT1Q96EB6 747 aa23.23■■□□□ 1.31
HMGA1-205ENST00000447654 DIAPH1O60610 1272 aaKnown RBP23.22■■□□□ 1.31
HMGA1-205ENST00000447654 TMPOP42166 694 aaKnown RBP23.22■■□□□ 1.31
HMGA1-205ENST00000447654 IRX3P78415 501 aaPredicted RBP23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms