RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 TAS1R3Q7RTX0 852 aa8.86□□□□□ -0.99
MCF2-206ENST00000446225 RNF135Q8IUD6 432 aa8.86□□□□□ -0.99
MCF2-206ENST00000446225 CLDN10P78369 228 aa8.86□□□□□ -0.99
MCF2-206ENST00000446225 FUT2Q10981 343 aa8.86□□□□□ -0.99
MCF2-206ENST00000446225 PLPP7Q8NBV4 271 aa8.86□□□□□ -0.99
MCF2-206ENST00000446225 ARID4BQ4LE39 1312 aaPredicted RBP8.85□□□□□ -0.99
MCF2-206ENST00000446225 DIP2BQ9P265 1576 aa8.85□□□□□ -0.99
MCF2-206ENST00000446225 TRIM6-TRIM34B2RNG4 842 aa8.85□□□□□ -0.99
MCF2-206ENST00000446225 NOP9Q86U38 636 aaKnown RBP8.85□□□□□ -0.99
MCF2-206ENST00000446225 CXXC1Q9P0U4 656 aaPredicted RBP8.85□□□□□ -0.99
MCF2-206ENST00000446225 FKBPLQ9UIM3 349 aa8.85□□□□□ -0.99
MCF2-206ENST00000446225 PCF11O94913 1555 aaKnown RBP8.85□□□□□ -0.99
MCF2-206ENST00000446225 HECW1Q76N89 1606 aa8.84□□□□□ -0.99
MCF2-206ENST00000446225 NUDT7P0C024 238 aa8.84□□□□□ -0.99
MCF2-206ENST00000446225 OCLNQ16625 522 aa8.84□□□□□ -0.99
MCF2-206ENST00000446225 CEP126Q9P2H0 1117 aa8.84□□□□□ -0.99
MCF2-206ENST00000446225 BRPF3Q9ULD4 1205 aa8.84□□□□□ -0.99
MCF2-206ENST00000446225 ARHGAP4P98171 946 aa8.84□□□□□ -1
MCF2-206ENST00000446225 EML3Q32P44 896 aa8.84□□□□□ -1
MCF2-206ENST00000446225 PRIMPOLQ96LW4 560 aa8.84□□□□□ -1
MCF2-206ENST00000446225 FYCO1Q9BQS8 1478 aa8.83□□□□□ -1
MCF2-206ENST00000446225 KIF13AQ9H1H9 1805 aa8.83□□□□□ -1
MCF2-206ENST00000446225 RAD51AP2Q09MP3 1159 aa8.83□□□□□ -1
MCF2-206ENST00000446225 ECM1Q16610 540 aa8.83□□□□□ -1
MCF2-206ENST00000446225 RGL4Q8IZJ4 473 aa8.83□□□□□ -1
MCF2-206ENST00000446225 GTF3C2Q8WUA4 911 aaPredicted RBP8.83□□□□□ -1
MCF2-206ENST00000446225 LNPKQ9C0E8 428 aa8.83□□□□□ -1
MCF2-206ENST00000446225 DNAAF2Q9NVR5 837 aaKnown RBP8.83□□□□□ -1
MCF2-206ENST00000446225 TMA7Q9Y2S6 64 aaKnown RBP8.83□□□□□ -1
MCF2-206ENST00000446225 GLI2P10070 1586 aa8.83□□□□□ -1
MCF2-206ENST00000446225 VPS8Q8N3P4 1428 aa8.82□□□□□ -1
MCF2-206ENST00000446225 DESI1Q6ICB0 168 aa8.82□□□□□ -1
MCF2-206ENST00000446225 NT5DC4Q86YG4 428 aa8.82□□□□□ -1
MCF2-206ENST00000446225 ATP1A2P50993 1020 aa8.82□□□□□ -1
MCF2-206ENST00000446225 RETREG3Q86VR2 466 aa8.82□□□□□ -1
MCF2-206ENST00000446225 TRIM50Q86XT4 487 aa8.82□□□□□ -1
MCF2-206ENST00000446225 CD109Q6YHK3 1445 aa8.81□□□□□ -1
MCF2-206ENST00000446225 MTMR3Q13615 1198 aa8.81□□□□□ -1
MCF2-206ENST00000446225 BCL2L12Q9HB09 334 aa8.81□□□□□ -1
MCF2-206ENST00000446225 CUEDC1Q9NWM3 386 aaPredicted RBP8.81□□□□□ -1
MCF2-206ENST00000446225 FKBP4Q02790 459 aaKnown RBP eCLIP8.8□□□□□ -1
MCF2-206ENST00000446225 LDLRAD1Q5T700 205 aa8.8□□□□□ -1
MCF2-206ENST00000446225 PRKAG2Q9UGJ0 569 aa8.8□□□□□ -1
MCF2-206ENST00000446225 DNMT3AQ9Y6K1 912 aaPredicted RBP8.8□□□□□ -1
MCF2-206ENST00000446225 LRRIQ1Q96JM4 1722 aa8.8□□□□□ -1
MCF2-206ENST00000446225 CCDC18Q5T9S5 1454 aa8.8□□□□□ -1
MCF2-206ENST00000446225 P4HBP07237 508 aaKnown RBP8.8□□□□□ -1
MCF2-206ENST00000446225 BRD2P25440 801 aaKnown RBP8.8□□□□□ -1
MCF2-206ENST00000446225 LYPD8Q6UX82 237 aa8.8□□□□□ -1
MCF2-206ENST00000446225 PHTF2Q8N3S3 785 aa8.8□□□□□ -1
MCF2-206ENST00000446225 LARGE2Q8N3Y3 721 aa8.8□□□□□ -1
MCF2-206ENST00000446225 TINF2Q9BSI4 451 aa8.8□□□□□ -1
MCF2-206ENST00000446225 SEPT3Q9UH03 358 aa8.8□□□□□ -1
MCF2-206ENST00000446225 TROQ12816 1431 aaPredicted RBP8.79□□□□□ -1
MCF2-206ENST00000446225 PTPREP23469 700 aa8.79□□□□□ -1
MCF2-206ENST00000446225 SF3B2Q13435 895 aaKnown RBP8.79□□□□□ -1
MCF2-206ENST00000446225 SWT1Q5T5J6 900 aaKnown RBP8.79□□□□□ -1
MCF2-206ENST00000446225 NOL8Q76FK4 1167 aaKnown RBP8.79□□□□□ -1
MCF2-206ENST00000446225 TMEM87AQ8NBN3 555 aa8.79□□□□□ -1
MCF2-206ENST00000446225 UBE2Q2Q8WVN8 375 aa8.79□□□□□ -1
MCF2-206ENST00000446225 ZNF592Q92610 1267 aa8.79□□□□□ -1
MCF2-206ENST00000446225 DHX38Q92620 1227 aaKnown RBP8.79□□□□□ -1
MCF2-206ENST00000446225 MAGI3Q5TCQ9 1506 aa8.79□□□□□ -1
MCF2-206ENST00000446225 CLCN6P51797 869 aa8.78□□□□□ -1
MCF2-206ENST00000446225 SEC13P55735 322 aa8.78□□□□□ -1
MCF2-206ENST00000446225 MAP7D1Q3KQU3 841 aa8.78□□□□□ -1
MCF2-206ENST00000446225 METTL16Q86W50 562 aaKnown RBP8.78□□□□□ -1
MCF2-206ENST00000446225 SIX5Q8N196 739 aa8.78□□□□□ -1
MCF2-206ENST00000446225 KHSRPQ92945 711 aaKnown RBP eCLIP8.78□□□□□ -1
MCF2-206ENST00000446225 KIAA1024Q9UPX6 916 aa8.78□□□□□ -1
MCF2-206ENST00000446225 NOD1Q9Y239 953 aa8.78□□□□□ -1
MCF2-206ENST00000446225 TSPOAP1O95153 1857 aa8.78□□□□□ -1
MCF2-206ENST00000446225 DKK1O94907 266 aa8.78□□□□□ -1
MCF2-206ENST00000446225 FMNL1O95466 1100 aaPredicted RBP8.78□□□□□ -1
MCF2-206ENST00000446225 ATP2B1P20020 1258 aa8.78□□□□□ -1
MCF2-206ENST00000446225 GTF2F1P35269 517 aaKnown RBP eCLIP8.78□□□□□ -1
MCF2-206ENST00000446225 ATP6V1AP38606 617 aa8.78□□□□□ -1
MCF2-206ENST00000446225 MKNK1Q9BUB5 465 aa8.78□□□□□ -1
MCF2-206ENST00000446225 RBM19Q9Y4C8 960 aaKnown RBP8.78□□□□□ -1
MCF2-206ENST00000446225 MAP3K4Q9Y6R4 1608 aa8.77□□□□□ -1.01
MCF2-206ENST00000446225 MARCH6O60337 910 aa8.77□□□□□ -1.01
MCF2-206ENST00000446225 PPP4R3BQ5MIZ7 849 aa8.77□□□□□ -1.01
MCF2-206ENST00000446225 TRAF7Q6Q0C0 670 aa8.77□□□□□ -1.01
MCF2-206ENST00000446225 CERS3Q8IU89 383 aa8.77□□□□□ -1.01
MCF2-206ENST00000446225 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.77□□□□□ -1.01
MCF2-206ENST00000446225 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.77□□□□□ -1.01
MCF2-206ENST00000446225 MTUS2Q5JR59 1369 aa8.76□□□□□ -1.01
MCF2-206ENST00000446225 TLDC2A0PJX2 215 aa8.76□□□□□ -1.01
MCF2-206ENST00000446225 CCDC144BQ3MJ40 725 aa8.76□□□□□ -1.01
MCF2-206ENST00000446225 FAM161BQ96MY7 647 aa8.76□□□□□ -1.01
MCF2-206ENST00000446225 CAPN10Q9HC96 672 aa8.76□□□□□ -1.01
MCF2-206ENST00000446225 CHIC2Q9UKJ5 165 aa8.76□□□□□ -1.01
MCF2-206ENST00000446225 PCDHB9Q9Y5E1 797 aa8.76□□□□□ -1.01
MCF2-206ENST00000446225 ABCA9Q8IUA7 1624 aa8.76□□□□□ -1.01
MCF2-206ENST00000446225 PROX2Q3B8N5 592 aa8.76□□□□□ -1.01
MCF2-206ENST00000446225 CCSER2Q9H7U1 834 aa8.76□□□□□ -1.01
MCF2-206ENST00000446225 MRS2Q9HD23 443 aa8.76□□□□□ -1.01
MCF2-206ENST00000446225 IQSEC3Q9UPP2 1182 aaPredicted RBP8.76□□□□□ -1.01
MCF2-206ENST00000446225 PPRC1Q5VV67 1664 aaKnown RBP8.75□□□□□ -1.01
MCF2-206ENST00000446225 SBNO2Q9Y2G9 1366 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms