RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 KCNQ2O43526 872 aa23.21■■□□□ 1.31
LIME1-202ENST00000444951 CASZ1Q86V15 1759 aa23.2■■□□□ 1.3
LIME1-202ENST00000444951 MYBBP1AQ9BQG0 1328 aaKnown RBP23.2■■□□□ 1.3
LIME1-202ENST00000444951 MTHFSP49914 203 aa23.2■■□□□ 1.3
LIME1-202ENST00000444951 NHSQ6T4R5 1651 aa23.19■■□□□ 1.3
LIME1-202ENST00000444951 PDGFDQ9GZP0 370 aaPredicted RBP23.18■■□□□ 1.3
LIME1-202ENST00000444951 MIER1Q8N108 512 aa23.16■■□□□ 1.3
LIME1-202ENST00000444951 ACSBG1Q96GR2 724 aa23.16■■□□□ 1.3
LIME1-202ENST00000444951 IL2RBP14784 551 aa23.15■■□□□ 1.3
LIME1-202ENST00000444951 HOXC9P31274 260 aa23.15■■□□□ 1.3
LIME1-202ENST00000444951 LTV1Q96GA3 475 aaPredicted RBP23.15■■□□□ 1.3
LIME1-202ENST00000444951 TXNRD1Q16881 649 aa23.14■■□□□ 1.29
LIME1-202ENST00000444951 HSP90AB2PQ58FF8 381 aa23.14■■□□□ 1.29
LIME1-202ENST00000444951 IP6K1Q92551 441 aa23.14■■□□□ 1.29
LIME1-202ENST00000444951 SPON1Q9HCB6 807 aa23.14■■□□□ 1.29
LIME1-202ENST00000444951 FLT4P35916 1363 aa23.14■■□□□ 1.29
LIME1-202ENST00000444951 RGPD2P0DJD1 1756 aa23.13■■□□□ 1.29
LIME1-202ENST00000444951 BTAF1O14981 1849 aa23.12■■□□□ 1.29
LIME1-202ENST00000444951 SMG6Q86US8 1419 aaKnown RBP23.12■■□□□ 1.29
LIME1-202ENST00000444951 CFAP53Q96M91 514 aa23.12■■□□□ 1.29
LIME1-202ENST00000444951 RTL1A6NKG5 1358 aa23.12■■□□□ 1.29
LIME1-202ENST00000444951 FAM208AQ9UK61 1670 aaKnown RBP23.11■■□□□ 1.29
LIME1-202ENST00000444951 KAT6BQ8WYB5 2073 aa23.11■■□□□ 1.29
LIME1-202ENST00000444951 CCDC184Q52MB2 194 aa23.09■■□□□ 1.29
LIME1-202ENST00000444951 KIF24Q5T7B8 1368 aa23.09■■□□□ 1.29
LIME1-202ENST00000444951 PAPPAQ13219 1627 aa23.08■■□□□ 1.29
LIME1-202ENST00000444951 ZBTB7AO95365 584 aa23.08■■□□□ 1.29
LIME1-202ENST00000444951 INSRP06213 1382 aa23.08■■□□□ 1.29
LIME1-202ENST00000444951 PPP1R1BQ9UD71 204 aaPredicted RBP23.07■■□□□ 1.28
LIME1-202ENST00000444951 SHANK3Q9BYB0 1731 aa23.06■■□□□ 1.28
LIME1-202ENST00000444951 EIF4A2Q14240 407 aaKnown RBP23.06■■□□□ 1.28
LIME1-202ENST00000444951 SLC15A2Q16348 729 aa23.06■■□□□ 1.28
LIME1-202ENST00000444951 MRS2Q9HD23 443 aa23.06■■□□□ 1.28
LIME1-202ENST00000444951 STK32BQ9NY57 414 aa23.06■■□□□ 1.28
LIME1-202ENST00000444951 DIAPH1O60610 1272 aaKnown RBP23.05■■□□□ 1.28
LIME1-202ENST00000444951 PTGER2P43116 358 aa23.04■■□□□ 1.28
LIME1-202ENST00000444951 DDX54Q8TDD1 881 aaKnown RBP23.04■■□□□ 1.28
LIME1-202ENST00000444951 MEGF6O75095 1541 aa23.03■■□□□ 1.28
LIME1-202ENST00000444951 U2SURPO15042 1029 aaKnown RBP23.03■■□□□ 1.28
LIME1-202ENST00000444951 COL3A1P02461 1466 aaPredicted RBP23.03■■□□□ 1.28
LIME1-202ENST00000444951 LRRC4BQ9NT99 713 aa23.02■■□□□ 1.28
LIME1-202ENST00000444951 ATF5Q9Y2D1 282 aaPredicted RBP23.02■■□□□ 1.28
LIME1-202ENST00000444951 IL13P35225 146 aa23.01■■□□□ 1.27
LIME1-202ENST00000444951 DOT1LQ8TEK3 1739 aa23.01■■□□□ 1.27
LIME1-202ENST00000444951 ZNF827Q17R98 1081 aa23■■□□□ 1.27
LIME1-202ENST00000444951 USHBP1Q8N6Y0 703 aa23■■□□□ 1.27
LIME1-202ENST00000444951 NUDCQ9Y266 331 aa22.99■■□□□ 1.27
LIME1-202ENST00000444951 CCER2I3L3R5 266 aa22.98■■□□□ 1.27
LIME1-202ENST00000444951 NBPF6Q5VWK0 638 aa22.98■■□□□ 1.27
LIME1-202ENST00000444951 NBPF4Q96M43 638 aa22.98■■□□□ 1.27
LIME1-202ENST00000444951 EYA1Q99502 592 aa22.97■■□□□ 1.27
LIME1-202ENST00000444951 U2AF1L5P0DN76 240 aaPredicted RBP22.96■■□□□ 1.27
LIME1-202ENST00000444951 U2AF1Q01081 240 aaKnown RBP eCLIP22.96■■□□□ 1.27
LIME1-202ENST00000444951 WDR43Q15061 677 aaKnown RBP eCLIP22.96■■□□□ 1.27
LIME1-202ENST00000444951 HMOX1P09601 288 aa22.95■■□□□ 1.26
LIME1-202ENST00000444951 UTRNP46939 3433 aa22.95■■□□□ 1.26
LIME1-202ENST00000444951 PRIM1P49642 420 aaKnown RBP22.95■■□□□ 1.26
LIME1-202ENST00000444951 KCNQ4P56696 695 aa22.95■■□□□ 1.26
LIME1-202ENST00000444951 SGIP1Q9BQI5 828 aa22.95■■□□□ 1.26
LIME1-202ENST00000444951 TUBGCP6Q96RT7 1819 aa22.94■■□□□ 1.26
LIME1-202ENST00000444951 ZCRB1Q8TBF4 217 aaKnown RBP22.94■■□□□ 1.26
LIME1-202ENST00000444951 MTFR1LQ9H019 292 aa22.94■■□□□ 1.26
LIME1-202ENST00000444951 SULT6B1Q6IMI4 303 aa22.93■■□□□ 1.26
LIME1-202ENST00000444951 FAM9BQ8IZU0 186 aa22.93■■□□□ 1.26
LIME1-202ENST00000444951 SYTL4Q96C24 671 aaPredicted RBP22.93■■□□□ 1.26
LIME1-202ENST00000444951 LY75O60449 1722 aa22.92■■□□□ 1.26
LIME1-202ENST00000444951 AEBP1Q8IUX7 1158 aa22.92■■□□□ 1.26
LIME1-202ENST00000444951 AKT1S1Q96B36 256 aa22.92■■□□□ 1.26
LIME1-202ENST00000444951 IGSF1Q8N6C5 1336 aa22.91■■□□□ 1.26
LIME1-202ENST00000444951 YY1P25490 414 aa22.91■■□□□ 1.26
LIME1-202ENST00000444951 PNISRQ8TF01 805 aaKnown RBP22.9■■□□□ 1.26
LIME1-202ENST00000444951 FHDC1Q9C0D6 1143 aaPredicted RBP22.9■■□□□ 1.26
LIME1-202ENST00000444951 QSER1Q2KHR3 1735 aa22.89■■□□□ 1.26
LIME1-202ENST00000444951 SLC27A3Q5K4L6 730 aa22.88■■□□□ 1.25
LIME1-202ENST00000444951 ADAMTS8Q9UP79 889 aa22.88■■□□□ 1.25
LIME1-202ENST00000444951 SYT17Q9BSW7 474 aa22.87■■□□□ 1.25
LIME1-202ENST00000444951 PNPLA7Q6ZV29 1317 aa22.86■■□□□ 1.25
LIME1-202ENST00000444951 RAPGEF4Q8WZA2 1011 aa22.86■■□□□ 1.25
LIME1-202ENST00000444951 TATP17735 454 aaPredicted RBP22.85■■□□□ 1.25
LIME1-202ENST00000444951 CCDC146Q8IYE0 955 aa22.85■■□□□ 1.25
LIME1-202ENST00000444951 PRKAR2BP31323 418 aa22.84■■□□□ 1.25
LIME1-202ENST00000444951 COL24A1Q17RW2 1714 aa22.84■■□□□ 1.25
LIME1-202ENST00000444951 TOGARAM1Q9Y4F4 1720 aa22.84■■□□□ 1.25
LIME1-202ENST00000444951 ARXQ96QS3 562 aa22.83■■□□□ 1.25
LIME1-202ENST00000444951 RSPH6AQ9H0K4 717 aa22.83■■□□□ 1.25
LIME1-202ENST00000444951 FCHSD2O94868 740 aa22.82■■□□□ 1.24
LIME1-202ENST00000444951 PKD1L3Q7Z443 1732 aa22.82■■□□□ 1.24
LIME1-202ENST00000444951 NCAPD2Q15021 1401 aa22.82■■□□□ 1.24
LIME1-202ENST00000444951 KDRP35968 1356 aa22.81■■□□□ 1.24
LIME1-202ENST00000444951 SENP3-EIF4A1A0A087X0R7 540 aa22.81■■□□□ 1.24
LIME1-202ENST00000444951 DCAF8L1A6NGE4 600 aa22.81■■□□□ 1.24
LIME1-202ENST00000444951 CYP27B1O15528 508 aa22.81■■□□□ 1.24
LIME1-202ENST00000444951 CCNL1Q9UK58 526 aaPredicted RBP22.81■■□□□ 1.24
LIME1-202ENST00000444951 TFCP2L1Q9NZI6 479 aa22.8■■□□□ 1.24
LIME1-202ENST00000444951 PCDH11XQ9BZA7 1347 aa22.8■■□□□ 1.24
LIME1-202ENST00000444951 PCDH11YQ9BZA8 1340 aa22.8■■□□□ 1.24
LIME1-202ENST00000444951 NEFMP07197 916 aa22.79■■□□□ 1.24
LIME1-202ENST00000444951 ITGB4P16144 1822 aa22.79■■□□□ 1.24
LIME1-202ENST00000444951 PNNQ9H307 717 aaKnown RBP22.78■■□□□ 1.24
LIME1-202ENST00000444951 MAPK8IP3Q9UPT6 1336 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms