RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 LTN1O94822 1766 aa16.3■□□□□ 0.2
COL28A1-204ENST00000444268 RGPD1P0DJD0 1748 aa16.3■□□□□ 0.2
COL28A1-204ENST00000444268 CRYBG1Q9Y4K1 1723 aa16.3■□□□□ 0.2
COL28A1-204ENST00000444268 PHRF1Q9P1Y6 1649 aaKnown RBP16.3■□□□□ 0.2
COL28A1-204ENST00000444268 TRIM27P14373 513 aa16.3■□□□□ 0.2
COL28A1-204ENST00000444268 RGS3P49796 1198 aa16.3■□□□□ 0.2
COL28A1-204ENST00000444268 HAP1P54257 671 aaPredicted RBP16.3■□□□□ 0.2
COL28A1-204ENST00000444268 PHACTR3Q96KR7 559 aa16.3■□□□□ 0.2
COL28A1-204ENST00000444268 C8orf34Q49A92 452 aa16.29■□□□□ 0.2
COL28A1-204ENST00000444268 HSP90AB2PQ58FF8 381 aa16.29■□□□□ 0.2
COL28A1-204ENST00000444268 ARHGEF10O15013 1369 aa16.29■□□□□ 0.2
COL28A1-204ENST00000444268 SKAP1Q86WV1 359 aa16.28■□□□□ 0.2
COL28A1-204ENST00000444268 PHLPP1O60346 1717 aa16.28■□□□□ 0.2
COL28A1-204ENST00000444268 ZNF853P0CG23 659 aa16.28■□□□□ 0.2
COL28A1-204ENST00000444268 AMPHP49418 695 aa16.28■□□□□ 0.2
COL28A1-204ENST00000444268 CFAP44Q96MT7 982 aa16.28■□□□□ 0.2
COL28A1-204ENST00000444268 ZC3H6P61129 1189 aaKnown RBP16.27■□□□□ 0.2
COL28A1-204ENST00000444268 KCNH5Q8NCM2 988 aa16.27■□□□□ 0.2
COL28A1-204ENST00000444268 ARHGAP45Q92619 1136 aa16.27■□□□□ 0.2
COL28A1-204ENST00000444268 NOB1Q9ULX3 412 aaKnown RBP16.27■□□□□ 0.2
COL28A1-204ENST00000444268 PCDHB15Q9Y5E8 787 aa16.27■□□□□ 0.2
COL28A1-204ENST00000444268 KIF24Q5T7B8 1368 aa16.27■□□□□ 0.19
COL28A1-204ENST00000444268 HDAC1Q13547 482 aaPredicted RBP16.26■□□□□ 0.19
COL28A1-204ENST00000444268 COL16A1Q07092 1604 aaPredicted RBP16.26■□□□□ 0.19
COL28A1-204ENST00000444268 HOXC9P31274 260 aa16.26■□□□□ 0.19
COL28A1-204ENST00000444268 EIF4A2Q14240 407 aaKnown RBP16.26■□□□□ 0.19
COL28A1-204ENST00000444268 ITPRIPQ8IWB1 547 aa16.26■□□□□ 0.19
COL28A1-204ENST00000444268 TNNQ9UQP3 1299 aa16.26■□□□□ 0.19
COL28A1-204ENST00000444268 FLT4P35916 1363 aa16.25■□□□□ 0.19
COL28A1-204ENST00000444268 ARHGEF25Q86VW2 580 aa16.25■□□□□ 0.19
COL28A1-204ENST00000444268 LAS1LQ9Y4W2 734 aaKnown RBP16.25■□□□□ 0.19
COL28A1-204ENST00000444268 ABCA3Q99758 1704 aa16.25■□□□□ 0.19
COL28A1-204ENST00000444268 LRRC59Q96AG4 307 aaKnown RBP16.23■□□□□ 0.19
COL28A1-204ENST00000444268 VAMP4O75379 141 aa16.23■□□□□ 0.19
COL28A1-204ENST00000444268 SULT6B1Q6IMI4 303 aa16.23■□□□□ 0.19
COL28A1-204ENST00000444268 LTV1Q96GA3 475 aaPredicted RBP16.23■□□□□ 0.19
COL28A1-204ENST00000444268 MBIPQ9NS73 344 aa16.23■□□□□ 0.19
COL28A1-204ENST00000444268 CHRNA2Q15822 529 aa16.22■□□□□ 0.19
COL28A1-204ENST00000444268 AXIN2Q9Y2T1 843 aa16.22■□□□□ 0.19
COL28A1-204ENST00000444268 IP6K1Q92551 441 aa16.21■□□□□ 0.19
COL28A1-204ENST00000444268 ZBTB40Q9NUA8 1239 aa16.21■□□□□ 0.19
COL28A1-204ENST00000444268 DAXXQ9UER7 740 aaPredicted RBP16.21■□□□□ 0.19
COL28A1-204ENST00000444268 KIAA0232Q92628 1395 aa16.21■□□□□ 0.19
COL28A1-204ENST00000444268 RGPD5Q99666 1765 aa16.21■□□□□ 0.18
COL28A1-204ENST00000444268 RTL1A6NKG5 1358 aa16.21■□□□□ 0.18
COL28A1-204ENST00000444268 TWISTNBQ3B726 338 aaPredicted RBP16.21■□□□□ 0.18
COL28A1-204ENST00000444268 TMEM57Q8N5G2 664 aa16.21■□□□□ 0.18
COL28A1-204ENST00000444268 PDZRN3Q9UPQ7 1066 aa16.21■□□□□ 0.18
COL28A1-204ENST00000444268 MRPL50Q8N5N7 158 aaKnown RBP16.2■□□□□ 0.18
COL28A1-204ENST00000444268 THUMPD2Q9BTF0 503 aaKnown RBP16.2■□□□□ 0.18
COL28A1-204ENST00000444268 KDRP35968 1356 aa16.19■□□□□ 0.18
COL28A1-204ENST00000444268 AEBP1Q8IUX7 1158 aa16.19■□□□□ 0.18
COL28A1-204ENST00000444268 API5Q9BZZ5 524 aaKnown RBP16.19■□□□□ 0.18
COL28A1-204ENST00000444268 COL18A1P39060 1754 aa16.19■□□□□ 0.18
COL28A1-204ENST00000444268 UPF2Q9HAU5 1272 aaKnown RBP16.18■□□□□ 0.18
COL28A1-204ENST00000444268 COL22A1Q8NFW1 1626 aaPredicted RBP16.18■□□□□ 0.18
COL28A1-204ENST00000444268 RGPD2P0DJD1 1756 aa16.17■□□□□ 0.18
COL28A1-204ENST00000444268 SMC5Q8IY18 1101 aa16.17■□□□□ 0.18
COL28A1-204ENST00000444268 EYA1Q99502 592 aa16.17■□□□□ 0.18
COL28A1-204ENST00000444268 ABCC4O15439 1325 aa16.17■□□□□ 0.18
COL28A1-204ENST00000444268 USHBP1Q8N6Y0 703 aa16.16■□□□□ 0.18
COL28A1-204ENST00000444268 CPDO75976 1380 aa16.16■□□□□ 0.18
COL28A1-204ENST00000444268 PRDM11Q9NQV5 511 aa16.15■□□□□ 0.18
COL28A1-204ENST00000444268 IGSF1Q8N6C5 1336 aa16.15■□□□□ 0.18
COL28A1-204ENST00000444268 CHL1O00533 1208 aa16.15■□□□□ 0.18
COL28A1-204ENST00000444268 TSPYL6Q8N831 410 aa16.15■□□□□ 0.18
COL28A1-204ENST00000444268 GAS2L2Q8NHY3 880 aa16.15■□□□□ 0.18
COL28A1-204ENST00000444268 ANKRD24Q8TF21 1146 aa16.15■□□□□ 0.18
COL28A1-204ENST00000444268 HTATSF1O43719 755 aaKnown RBP16.14■□□□□ 0.17
COL28A1-204ENST00000444268 HSPA1LP34931 641 aa16.14■□□□□ 0.17
COL28A1-204ENST00000444268 RTL5Q5HYW3 569 aaPredicted RBP16.14■□□□□ 0.17
COL28A1-204ENST00000444268 FAM83GA6ND36 823 aa16.13■□□□□ 0.17
COL28A1-204ENST00000444268 NBPF6Q5VWK0 638 aa16.13■□□□□ 0.17
COL28A1-204ENST00000444268 C8orf58Q8NAV2 365 aa16.13■□□□□ 0.17
COL28A1-204ENST00000444268 RTF1Q92541 710 aaKnown RBP16.13■□□□□ 0.17
COL28A1-204ENST00000444268 NBPF4Q96M43 638 aa16.13■□□□□ 0.17
COL28A1-204ENST00000444268 USP35Q9P2H5 1018 aa16.13■□□□□ 0.17
COL28A1-204ENST00000444268 LMO7Q8WWI1 1683 aa16.13■□□□□ 0.17
COL28A1-204ENST00000444268 CAMTA1Q9Y6Y1 1673 aa16.13■□□□□ 0.17
COL28A1-204ENST00000444268 NUTM2BA6NNL0 878 aaPredicted RBP16.13■□□□□ 0.17
COL28A1-204ENST00000444268 NUTM2EB1AL46 878 aaPredicted RBP16.13■□□□□ 0.17
COL28A1-204ENST00000444268 NUTM2AQ8IVF1 878 aaPredicted RBP16.13■□□□□ 0.17
COL28A1-204ENST00000444268 GCC1Q96CN9 775 aa16.13■□□□□ 0.17
COL28A1-204ENST00000444268 ZBTB7BO15156 539 aaPredicted RBP16.12■□□□□ 0.17
COL28A1-204ENST00000444268 ERBB3P21860 1342 aa16.12■□□□□ 0.17
COL28A1-204ENST00000444268 LRRC37A3O60309 1634 aa16.11■□□□□ 0.17
COL28A1-204ENST00000444268 CRB1P82279 1406 aa16.11■□□□□ 0.17
COL28A1-204ENST00000444268 PTPRCP08575 1304 aa16.11■□□□□ 0.17
COL28A1-204ENST00000444268 ADAMTS2O95450 1211 aa16.11■□□□□ 0.17
COL28A1-204ENST00000444268 DCTN1Q14203 1278 aa16.11■□□□□ 0.17
COL28A1-204ENST00000444268 ELL2O00472 640 aaPredicted RBP16.1■□□□□ 0.17
COL28A1-204ENST00000444268 NUCB1Q02818 461 aa16.1■□□□□ 0.17
COL28A1-204ENST00000444268 SOS1Q07889 1333 aaPredicted RBP16.09■□□□□ 0.17
COL28A1-204ENST00000444268 BECN1Q14457 450 aa16.09■□□□□ 0.17
COL28A1-204ENST00000444268 ABCC6O95255 1503 aa16.09■□□□□ 0.17
COL28A1-204ENST00000444268 JCADQ9P266 1359 aa16.09■□□□□ 0.17
COL28A1-204ENST00000444268 MCM10Q7L590 875 aa16.08■□□□□ 0.17
COL28A1-204ENST00000444268 CSB-PGBD3P0DP91 1061 aa16.08■□□□□ 0.16
COL28A1-204ENST00000444268 NBR1Q14596 966 aa16.08■□□□□ 0.16
COL28A1-204ENST00000444268 MTHFSDQ2M296 383 aaKnown RBP16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms