RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 DCTN1Q14203 1278 aa10.43□□□□□ -0.74
CCDC39-201ENST00000442201 LAS1LQ9Y4W2 734 aaKnown RBP10.43□□□□□ -0.74
CCDC39-201ENST00000442201 UBAP1LF5GYI3 381 aa10.43□□□□□ -0.74
CCDC39-201ENST00000442201 NCAPD2Q15021 1401 aa10.42□□□□□ -0.74
CCDC39-201ENST00000442201 HTATSF1O43719 755 aaKnown RBP10.42□□□□□ -0.74
CCDC39-201ENST00000442201 CT47B1P0C2W7 299 aaPredicted RBP10.42□□□□□ -0.74
CCDC39-201ENST00000442201 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.42□□□□□ -0.74
CCDC39-201ENST00000442201 CRYBG1Q9Y4K1 1723 aa10.42□□□□□ -0.74
CCDC39-201ENST00000442201 CFAP44Q96MT7 982 aa10.42□□□□□ -0.74
CCDC39-201ENST00000442201 GNAT3A8MTJ3 354 aa10.41□□□□□ -0.74
CCDC39-201ENST00000442201 EXOSC9Q06265 439 aaKnown RBP10.41□□□□□ -0.74
CCDC39-201ENST00000442201 PLEKHO1Q53GL0 409 aaPredicted RBP10.41□□□□□ -0.74
CCDC39-201ENST00000442201 MCM10Q7L590 875 aa10.41□□□□□ -0.74
CCDC39-201ENST00000442201 ZNF853P0CG23 659 aa10.41□□□□□ -0.74
CCDC39-201ENST00000442201 AMOTQ4VCS5 1084 aa10.41□□□□□ -0.74
CCDC39-201ENST00000442201 RAPGEF4Q8WZA2 1011 aa10.41□□□□□ -0.74
CCDC39-201ENST00000442201 MAP3K5Q99683 1374 aa10.4□□□□□ -0.74
CCDC39-201ENST00000442201 PLIN1O60240 522 aa10.39□□□□□ -0.75
CCDC39-201ENST00000442201 RARSP54136 660 aaKnown RBP10.39□□□□□ -0.75
CCDC39-201ENST00000442201 MBIPQ9NS73 344 aa10.39□□□□□ -0.75
CCDC39-201ENST00000442201 COL18A1P39060 1754 aa10.39□□□□□ -0.75
CCDC39-201ENST00000442201 BCAR3O75815 825 aa10.39□□□□□ -0.75
CCDC39-201ENST00000442201 WDR17Q8IZU2 1322 aa10.39□□□□□ -0.75
CCDC39-201ENST00000442201 ZNF530Q6P9A1 599 aaPredicted RBP10.39□□□□□ -0.75
CCDC39-201ENST00000442201 CHL1O00533 1208 aa10.38□□□□□ -0.75
CCDC39-201ENST00000442201 TATP17735 454 aaPredicted RBP10.38□□□□□ -0.75
CCDC39-201ENST00000442201 TOM1L2Q6ZVM7 507 aa10.38□□□□□ -0.75
CCDC39-201ENST00000442201 CERKQ8TCT0 537 aa10.38□□□□□ -0.75
CCDC39-201ENST00000442201 CAMTA1Q9Y6Y1 1673 aa10.38□□□□□ -0.75
CCDC39-201ENST00000442201 EVA1CP58658 441 aa10.38□□□□□ -0.75
CCDC39-201ENST00000442201 AKAP4Q5JQC9 854 aa10.38□□□□□ -0.75
CCDC39-201ENST00000442201 C1orf141Q5JVX7 400 aa10.38□□□□□ -0.75
CCDC39-201ENST00000442201 CRB1P82279 1406 aa10.37□□□□□ -0.75
CCDC39-201ENST00000442201 GLIPR1L2Q4G1C9 344 aa10.37□□□□□ -0.75
CCDC39-201ENST00000442201 IL17REQ8NFR9 667 aa10.37□□□□□ -0.75
CCDC39-201ENST00000442201 ZNF428Q96B54 188 aa10.37□□□□□ -0.75
CCDC39-201ENST00000442201 ZMYND15Q9H091 742 aa10.37□□□□□ -0.75
CCDC39-201ENST00000442201 PPP4R2Q9NY27 417 aa10.37□□□□□ -0.75
CCDC39-201ENST00000442201 DLG5Q8TDM6 1919 aa10.37□□□□□ -0.75
CCDC39-201ENST00000442201 COL5A2P05997 1499 aaPredicted RBP10.37□□□□□ -0.75
CCDC39-201ENST00000442201 CANXP27824 592 aaKnown RBP10.37□□□□□ -0.75
CCDC39-201ENST00000442201 LMO7Q8WWI1 1683 aa10.37□□□□□ -0.75
CCDC39-201ENST00000442201 ABCA3Q99758 1704 aa10.36□□□□□ -0.75
CCDC39-201ENST00000442201 PLEKHG2Q9H7P9 1386 aa10.36□□□□□ -0.75
CCDC39-201ENST00000442201 STRN4Q9NRL3 753 aa10.36□□□□□ -0.75
CCDC39-201ENST00000442201 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.36□□□□□ -0.75
CCDC39-201ENST00000442201 SPG7Q9UQ90 795 aa10.36□□□□□ -0.75
CCDC39-201ENST00000442201 BCL2L13Q9BXK5 485 aa10.36□□□□□ -0.75
CCDC39-201ENST00000442201 TSPYL4Q9UJ04 414 aa10.36□□□□□ -0.75
CCDC39-201ENST00000442201 COL16A1Q07092 1604 aaPredicted RBP10.36□□□□□ -0.75
CCDC39-201ENST00000442201 RGPD5Q99666 1765 aa10.36□□□□□ -0.75
CCDC39-201ENST00000442201 SMC4Q9NTJ3 1288 aa10.36□□□□□ -0.75
CCDC39-201ENST00000442201 BTG4Q9NY30 223 aa10.36□□□□□ -0.75
CCDC39-201ENST00000442201 RGPD2P0DJD1 1756 aa10.36□□□□□ -0.75
CCDC39-201ENST00000442201 TWISTNBQ3B726 338 aaPredicted RBP10.35□□□□□ -0.75
CCDC39-201ENST00000442201 FRAT1Q92837 279 aaPredicted RBP10.35□□□□□ -0.75
CCDC39-201ENST00000442201 CARD10Q9BWT7 1032 aa10.35□□□□□ -0.75
CCDC39-201ENST00000442201 FAM208AQ9UK61 1670 aaKnown RBP10.35□□□□□ -0.75
CCDC39-201ENST00000442201 PHLPP1O60346 1717 aa10.35□□□□□ -0.75
CCDC39-201ENST00000442201 COL22A1Q8NFW1 1626 aaPredicted RBP10.35□□□□□ -0.75
CCDC39-201ENST00000442201 TAF7Q15545 349 aaPredicted RBP10.35□□□□□ -0.75
CCDC39-201ENST00000442201 SSH1Q8WYL5 1049 aa10.35□□□□□ -0.75
CCDC39-201ENST00000442201 CEMIPQ8WUJ3 1361 aa10.35□□□□□ -0.75
CCDC39-201ENST00000442201 ELL2O00472 640 aaPredicted RBP10.34□□□□□ -0.75
CCDC39-201ENST00000442201 VAMP4O75379 141 aa10.34□□□□□ -0.75
CCDC39-201ENST00000442201 ALDH1L2Q3SY69 923 aa10.34□□□□□ -0.75
CCDC39-201ENST00000442201 LARP1Q6PKG0 1096 aaKnown RBP10.34□□□□□ -0.75
CCDC39-201ENST00000442201 TSPYL6Q8N831 410 aa10.34□□□□□ -0.75
CCDC39-201ENST00000442201 C8orf58Q8NAV2 365 aa10.34□□□□□ -0.75
CCDC39-201ENST00000442201 EXOC6Q8TAG9 804 aa10.34□□□□□ -0.75
CCDC39-201ENST00000442201 BABAM1Q9NWV8 329 aa10.34□□□□□ -0.75
CCDC39-201ENST00000442201 MEGF6O75095 1541 aa10.34□□□□□ -0.75
CCDC39-201ENST00000442201 TEFQ10587 303 aa10.34□□□□□ -0.75
CCDC39-201ENST00000442201 C20orf194Q5TEA3 1177 aa10.34□□□□□ -0.75
CCDC39-201ENST00000442201 MPRIPQ6WCQ1 1025 aa10.34□□□□□ -0.75
CCDC39-201ENST00000442201 MIS18AQ9NYP9 233 aa10.34□□□□□ -0.75
CCDC39-201ENST00000442201 PDE3AQ14432 1141 aa10.34□□□□□ -0.75
CCDC39-201ENST00000442201 LGR6Q9HBX8 967 aa10.34□□□□□ -0.75
CCDC39-201ENST00000442201 ADAMTS2O95450 1211 aa10.33□□□□□ -0.76
CCDC39-201ENST00000442201 CRBNQ96SW2 442 aa10.33□□□□□ -0.76
CCDC39-201ENST00000442201 RNMTO43148 476 aaKnown RBP10.33□□□□□ -0.76
CCDC39-201ENST00000442201 FGD1P98174 961 aa10.33□□□□□ -0.76
CCDC39-201ENST00000442201 IFNL2Q8IZJ0 200 aa10.33□□□□□ -0.76
CCDC39-201ENST00000442201 NUTM2BA6NNL0 878 aaPredicted RBP10.32□□□□□ -0.76
CCDC39-201ENST00000442201 NUTM2EB1AL46 878 aaPredicted RBP10.32□□□□□ -0.76
CCDC39-201ENST00000442201 NUTM2AQ8IVF1 878 aaPredicted RBP10.32□□□□□ -0.76
CCDC39-201ENST00000442201 KIF16BQ96L93 1317 aa10.32□□□□□ -0.76
CCDC39-201ENST00000442201 IL2RBP14784 551 aa10.32□□□□□ -0.76
CCDC39-201ENST00000442201 PHKG2P15735 406 aa10.32□□□□□ -0.76
CCDC39-201ENST00000442201 ZKSCAN2Q63HK3 967 aa10.32□□□□□ -0.76
CCDC39-201ENST00000442201 OVOS2A0A0G2JMS6 1433 aa10.32□□□□□ -0.76
CCDC39-201ENST00000442201 JCADQ9P266 1359 aa10.31□□□□□ -0.76
CCDC39-201ENST00000442201 IPO8O15397 1037 aaKnown RBP10.31□□□□□ -0.76
CCDC39-201ENST00000442201 MS4A1P11836 297 aa10.31□□□□□ -0.76
CCDC39-201ENST00000442201 KRT24Q2M2I5 525 aa10.31□□□□□ -0.76
CCDC39-201ENST00000442201 LRRC37A3O60309 1634 aa10.31□□□□□ -0.76
CCDC39-201ENST00000442201 COL14A1Q05707 1796 aaKnown RBP10.31□□□□□ -0.76
CCDC39-201ENST00000442201 HSP90AB1P08238 724 aaKnown RBP10.31□□□□□ -0.76
CCDC39-201ENST00000442201 BRPF1P55201 1214 aaPredicted RBP10.31□□□□□ -0.76
CCDC39-201ENST00000442201 ZCRB1Q8TBF4 217 aaKnown RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms