RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 COG6Q9Y2V7 657 aa7.67□□□□□ -1.18
VPS50-205ENST00000441602 TRPM3Q9HCF6 1732 aaPredicted RBP7.67□□□□□ -1.18
VPS50-205ENST00000441602 PHRF1Q9P1Y6 1649 aaKnown RBP7.67□□□□□ -1.18
VPS50-205ENST00000441602 ABCC6O95255 1503 aa7.67□□□□□ -1.18
VPS50-205ENST00000441602 CHL1O00533 1208 aa7.67□□□□□ -1.18
VPS50-205ENST00000441602 RAPGEF4Q8WZA2 1011 aa7.67□□□□□ -1.18
VPS50-205ENST00000441602 RWDD1Q9H446 243 aaPredicted RBP7.67□□□□□ -1.18
VPS50-205ENST00000441602 TSHZ2Q9NRE2 1034 aa7.67□□□□□ -1.18
VPS50-205ENST00000441602 MVPQ14764 893 aaKnown RBP7.66□□□□□ -1.18
VPS50-205ENST00000441602 PANK1Q8TE04 598 aa7.66□□□□□ -1.18
VPS50-205ENST00000441602 PLEKHG2Q9H7P9 1386 aa7.66□□□□□ -1.18
VPS50-205ENST00000441602 TATP17735 454 aaPredicted RBP7.66□□□□□ -1.18
VPS50-205ENST00000441602 ZNF530Q6P9A1 599 aaPredicted RBP7.66□□□□□ -1.18
VPS50-205ENST00000441602 BRINP3Q76B58 766 aa7.66□□□□□ -1.18
VPS50-205ENST00000441602 MCM10Q7L590 875 aa7.66□□□□□ -1.18
VPS50-205ENST00000441602 VAMP4O75379 141 aa7.66□□□□□ -1.18
VPS50-205ENST00000441602 STK31Q9BXU1 1019 aa7.66□□□□□ -1.18
VPS50-205ENST00000441602 STRCP1A6NGW2 1772 aa7.66□□□□□ -1.18
VPS50-205ENST00000441602 STRCQ7RTU9 1775 aa7.66□□□□□ -1.18
VPS50-205ENST00000441602 MARF1Q9Y4F3 1742 aaKnown RBP7.66□□□□□ -1.18
VPS50-205ENST00000441602 NCAPD2Q15021 1401 aa7.66□□□□□ -1.18
VPS50-205ENST00000441602 FAM83GA6ND36 823 aa7.65□□□□□ -1.18
VPS50-205ENST00000441602 ZC3H6P61129 1189 aaKnown RBP7.65□□□□□ -1.18
VPS50-205ENST00000441602 TEFQ10587 303 aa7.65□□□□□ -1.18
VPS50-205ENST00000441602 DCTN1Q14203 1278 aa7.65□□□□□ -1.18
VPS50-205ENST00000441602 ITPRIPQ8IWB1 547 aa7.65□□□□□ -1.18
VPS50-205ENST00000441602 NLRP2Q9NX02 1062 aa7.65□□□□□ -1.18
VPS50-205ENST00000441602 NOB1Q9ULX3 412 aaKnown RBP7.65□□□□□ -1.18
VPS50-205ENST00000441602 LTN1O94822 1766 aa7.65□□□□□ -1.18
VPS50-205ENST00000441602 TAF7Q15545 349 aaPredicted RBP7.65□□□□□ -1.18
VPS50-205ENST00000441602 AKAP4Q5JQC9 854 aa7.65□□□□□ -1.18
VPS50-205ENST00000441602 SPG7Q9UQ90 795 aa7.65□□□□□ -1.18
VPS50-205ENST00000441602 MRPL50Q8N5N7 158 aaKnown RBP7.65□□□□□ -1.19
VPS50-205ENST00000441602 ALS2Q96Q42 1657 aa7.64□□□□□ -1.19
VPS50-205ENST00000441602 PXDNQ92626 1479 aa7.64□□□□□ -1.19
VPS50-205ENST00000441602 NBPF6Q5VWK0 638 aa7.64□□□□□ -1.19
VPS50-205ENST00000441602 USHBP1Q8N6Y0 703 aa7.64□□□□□ -1.19
VPS50-205ENST00000441602 NBPF4Q96M43 638 aa7.64□□□□□ -1.19
VPS50-205ENST00000441602 PRDM11Q9NQV5 511 aa7.64□□□□□ -1.19
VPS50-205ENST00000441602 MED1Q15648 1581 aaPredicted RBP7.64□□□□□ -1.19
VPS50-205ENST00000441602 CPDO75976 1380 aa7.64□□□□□ -1.19
VPS50-205ENST00000441602 CRB1P82279 1406 aa7.64□□□□□ -1.19
VPS50-205ENST00000441602 SOS2Q07890 1332 aaPredicted RBP7.64□□□□□ -1.19
VPS50-205ENST00000441602 ELL2O00472 640 aaPredicted RBP7.64□□□□□ -1.19
VPS50-205ENST00000441602 HSP90AB1P08238 724 aaKnown RBP7.64□□□□□ -1.19
VPS50-205ENST00000441602 TRIM27P14373 513 aa7.64□□□□□ -1.19
VPS50-205ENST00000441602 PTPRCP08575 1304 aa7.63□□□□□ -1.19
VPS50-205ENST00000441602 CCDC30Q5VVM6 783 aa7.63□□□□□ -1.19
VPS50-205ENST00000441602 ERBB3P21860 1342 aa7.63□□□□□ -1.19
VPS50-205ENST00000441602 OVOS2A0A0G2JMS6 1433 aa7.63□□□□□ -1.19
VPS50-205ENST00000441602 DLG5Q8TDM6 1919 aa7.63□□□□□ -1.19
VPS50-205ENST00000441602 C8orf58Q8NAV2 365 aa7.63□□□□□ -1.19
VPS50-205ENST00000441602 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.63□□□□□ -1.192e-6■■■■□ 23.6
VPS50-205ENST00000441602 LRRC59Q96AG4 307 aaKnown RBP7.62□□□□□ -1.19
VPS50-205ENST00000441602 HOXB7P09629 217 aa7.62□□□□□ -1.19
VPS50-205ENST00000441602 KDM2BQ8NHM5 1336 aa7.62□□□□□ -1.19
VPS50-205ENST00000441602 TMEM57Q8N5G2 664 aa7.61□□□□□ -1.19
VPS50-205ENST00000441602 TSPYL6Q8N831 410 aa7.61□□□□□ -1.19
VPS50-205ENST00000441602 DDX17Q92841 729 aaKnown RBP7.61□□□□□ -1.19
VPS50-205ENST00000441602 ZBTB47Q9UFB7 747 aaPredicted RBP7.61□□□□□ -1.19
VPS50-205ENST00000441602 FAM208AQ9UK61 1670 aaKnown RBP7.61□□□□□ -1.19
VPS50-205ENST00000441602 RLBP1P12271 317 aa7.61□□□□□ -1.19
VPS50-205ENST00000441602 RNMTO43148 476 aaKnown RBP7.6□□□□□ -1.19
VPS50-205ENST00000441602 EVA1CP58658 441 aa7.6□□□□□ -1.19
VPS50-205ENST00000441602 IL17REQ8NFR9 667 aa7.6□□□□□ -1.19
VPS50-205ENST00000441602 IFNL2Q8IZJ0 200 aa7.6□□□□□ -1.19
VPS50-205ENST00000441602 CABLES1Q8TDN4 633 aa7.6□□□□□ -1.19
VPS50-205ENST00000441602 ABCC4O15439 1325 aa7.6□□□□□ -1.19
VPS50-205ENST00000441602 XIRP1Q702N8 1843 aaKnown RBP7.6□□□□□ -1.19
VPS50-205ENST00000441602 CCT4P50991 539 aaKnown RBP7.59□□□□□ -1.19
VPS50-205ENST00000441602 CHRNA2Q15822 529 aa7.59□□□□□ -1.19
VPS50-205ENST00000441602 TOM1L2Q6ZVM7 507 aa7.59□□□□□ -1.19
VPS50-205ENST00000441602 RBM19Q9Y4C8 960 aaKnown RBP7.59□□□□□ -1.19
VPS50-205ENST00000441602 CEMIPQ8WUJ3 1361 aa7.59□□□□□ -1.19
VPS50-205ENST00000441602 LRRC37A3O60309 1634 aa7.59□□□□□ -1.19
VPS50-205ENST00000441602 BTBD11A6QL63 1104 aa7.59□□□□□ -1.19
VPS50-205ENST00000441602 HDAC1Q13547 482 aaPredicted RBP7.59□□□□□ -1.19
VPS50-205ENST00000441602 CAMTA1Q9Y6Y1 1673 aa7.59□□□□□ -1.19
VPS50-205ENST00000441602 SLC4A2P04920 1241 aa7.59□□□□□ -1.19
VPS50-205ENST00000441602 HDGFL1Q5TGJ6 251 aa7.59□□□□□ -1.19
VPS50-205ENST00000441602 WDR17Q8IZU2 1322 aa7.59□□□□□ -1.19
VPS50-205ENST00000441602 ANP32AP39687 249 aaKnown RBP7.58□□□□□ -1.2
VPS50-205ENST00000441602 HDAC5Q9UQL6 1122 aa7.58□□□□□ -1.2
VPS50-205ENST00000441602 TNNQ9UQP3 1299 aa7.58□□□□□ -1.2
VPS50-205ENST00000441602 AXIN2Q9Y2T1 843 aa7.58□□□□□ -1.2
VPS50-205ENST00000441602 MIS18AQ9NYP9 233 aa7.58□□□□□ -1.2
VPS50-205ENST00000441602 TOM1O60784 492 aa7.58□□□□□ -1.2
VPS50-205ENST00000441602 HMMRO75330 724 aa7.58□□□□□ -1.2
VPS50-205ENST00000441602 INTS3Q68E01 1043 aaKnown RBP7.58□□□□□ -1.2
VPS50-205ENST00000441602 MPRIPQ6WCQ1 1025 aa7.58□□□□□ -1.2
VPS50-205ENST00000441602 ZBTB40Q9NUA8 1239 aa7.58□□□□□ -1.2
VPS50-205ENST00000441602 LMO7Q8WWI1 1683 aa7.57□□□□□ -1.2
VPS50-205ENST00000441602 RGS3P49796 1198 aa7.57□□□□□ -1.2
VPS50-205ENST00000441602 DCAF5Q96JK2 942 aa7.57□□□□□ -1.2
VPS50-205ENST00000441602 TTC5Q8N0Z6 440 aa7.57□□□□□ -1.2
VPS50-205ENST00000441602 CARD10Q9BWT7 1032 aa7.57□□□□□ -1.2
VPS50-205ENST00000441602 NHSL1Q5SYE7 1610 aa7.57□□□□□ -1.2
VPS50-205ENST00000441602 PCDH11XQ9BZA7 1347 aa7.57□□□□□ -1.2
VPS50-205ENST00000441602 PCDH11YQ9BZA8 1340 aa7.57□□□□□ -1.2
VPS50-205ENST00000441602 EIF5BO60841 1220 aaKnown RBP7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms