RNA–Protein interactions for RNA: ENST00000441222.7

USP46-201, Transcript of ubiquitin specific peptidase 46, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP46, Length 7,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-201ENST00000441222 FKBP15Q5T1M5 1219 aa7.8□□□□□ -1.16
USP46-201ENST00000441222 TWISTNBQ3B726 338 aaPredicted RBP7.8□□□□□ -1.16
USP46-201ENST00000441222 GIMAP7Q8NHV1 300 aa7.8□□□□□ -1.16
USP46-201ENST00000441222 CCDC102AQ96A19 550 aa7.8□□□□□ -1.16
USP46-201ENST00000441222 SEC63Q9UGP8 760 aaKnown RBP7.8□□□□□ -1.16
USP46-201ENST00000441222 CADPSQ9ULU8 1353 aa7.8□□□□□ -1.16
USP46-201ENST00000441222 RRP9O43818 475 aaKnown RBP7.8□□□□□ -1.16
USP46-201ENST00000441222 U3KPZ7 1027 aaPredicted RBP7.8□□□□□ -1.16
USP46-201ENST00000441222 MTHFSP49914 203 aa7.8□□□□□ -1.16
USP46-201ENST00000441222 IL27Q8NEV9 243 aa7.8□□□□□ -1.16
USP46-201ENST00000441222 KIF5CO60282 957 aa7.8□□□□□ -1.16
USP46-201ENST00000441222 NAA15Q9BXJ9 866 aaKnown RBP7.8□□□□□ -1.16
USP46-201ENST00000441222 POLR3GO15318 223 aaPredicted RBP7.8□□□□□ -1.16
USP46-201ENST00000441222 WDR63Q8IWG1 891 aa7.8□□□□□ -1.16
USP46-201ENST00000441222 CTAGE5O15320 804 aa7.79□□□□□ -1.16
USP46-201ENST00000441222 CABP4P57796 275 aa7.79□□□□□ -1.16
USP46-201ENST00000441222 CETN1Q12798 172 aa7.79□□□□□ -1.16
USP46-201ENST00000441222 MAP3K11Q16584 847 aa7.79□□□□□ -1.16
USP46-201ENST00000441222 TMCO3Q6UWJ1 677 aa7.79□□□□□ -1.16
USP46-201ENST00000441222 KIF18AQ8NI77 898 aa7.79□□□□□ -1.16
USP46-201ENST00000441222 CEP63Q96MT8 703 aa7.79□□□□□ -1.16
USP46-201ENST00000441222 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.79□□□□□ -1.16
USP46-201ENST00000441222 PAFAH1B1P43034 410 aa7.79□□□□□ -1.16
USP46-201ENST00000441222 SSR1P43307 286 aaKnown RBP7.79□□□□□ -1.16
USP46-201ENST00000441222 PLEKHH1Q9ULM0 1364 aa7.79□□□□□ -1.16
USP46-201ENST00000441222 SMC1AQ14683 1233 aaKnown RBP7.79□□□□□ -1.16
USP46-201ENST00000441222 CEP126Q9P2H0 1117 aa7.79□□□□□ -1.16
USP46-201ENST00000441222 USO1O60763 962 aaKnown RBP7.79□□□□□ -1.16
USP46-201ENST00000441222 PYM1Q9BRP8 204 aaKnown RBP7.79□□□□□ -1.16
USP46-201ENST00000441222 EHMT1Q9H9B1 1298 aa7.79□□□□□ -1.16
USP46-201ENST00000441222 NUP133Q8WUM0 1156 aa7.79□□□□□ -1.16
USP46-201ENST00000441222 POTEB2H3BUK9 544 aa7.79□□□□□ -1.16
USP46-201ENST00000441222 SSBP05455 408 aaKnown RBP eCLIP7.79□□□□□ -1.16
USP46-201ENST00000441222 RBM5P52756 815 aaKnown RBP eCLIP7.79□□□□□ -1.16
USP46-201ENST00000441222 ZNF652Q9Y2D9 606 aa7.79□□□□□ -1.16
USP46-201ENST00000441222 ARHGAP5Q13017 1502 aa7.78□□□□□ -1.16
USP46-201ENST00000441222 FAM177A1Q8N128 213 aaPredicted RBP7.78□□□□□ -1.16
USP46-201ENST00000441222 GRPEL1Q9HAV7 217 aa7.78□□□□□ -1.16
USP46-201ENST00000441222 AKAP2Q9Y2D5 859 aa7.78□□□□□ -1.16
USP46-201ENST00000441222 CFAP100Q494V2 611 aa7.78□□□□□ -1.16
USP46-201ENST00000441222 GSTTP1A0A1W2PQM5 241 aa7.78□□□□□ -1.16
USP46-201ENST00000441222 SFPQP23246 707 aaKnown RBP eCLIP7.78□□□□□ -1.16
USP46-201ENST00000441222 HMGB1P09429 215 aaKnown RBP7.78□□□□□ -1.16
USP46-201ENST00000441222 CACNA2D4Q7Z3S7 1137 aa7.78□□□□□ -1.16
USP46-201ENST00000441222 TCP11L2Q8N4U5 519 aa7.78□□□□□ -1.16
USP46-201ENST00000441222 CFAP57Q96MR6 1250 aa7.78□□□□□ -1.16
USP46-201ENST00000441222 ANO10Q9NW15 660 aa7.78□□□□□ -1.16
USP46-201ENST00000441222 FAM193AP78312 1265 aa7.78□□□□□ -1.16
USP46-201ENST00000441222 IFFO1Q0D2I5 559 aa7.78□□□□□ -1.16
USP46-201ENST00000441222 LUZP1Q86V48 1076 aa7.78□□□□□ -1.16
USP46-201ENST00000441222 ZSCAN29Q8IWY8 852 aaPredicted RBP7.78□□□□□ -1.16
USP46-201ENST00000441222 SREK1Q8WXA9 508 aaKnown RBP7.78□□□□□ -1.16
USP46-201ENST00000441222 RBM42Q9BTD8 480 aaKnown RBP7.78□□□□□ -1.16
USP46-201ENST00000441222 UQCRHLA0A096LP55 91 aa7.77□□□□□ -1.16
USP46-201ENST00000441222 NEMFO60524 1076 aa7.77□□□□□ -1.16
USP46-201ENST00000441222 UQCRHP07919 91 aa7.77□□□□□ -1.16
USP46-201ENST00000441222 PTPN14Q15678 1187 aa7.77□□□□□ -1.16
USP46-201ENST00000441222 BCL11BQ9C0K0 894 aaPredicted RBP7.77□□□□□ -1.16
USP46-201ENST00000441222 GOLGA6L9A6NEM1 432 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 CASQ1P31415 396 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 LRRC45Q96CN5 670 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 TTC21AQ8NDW8 1320 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 BBXQ8WY36 941 aaPredicted RBP7.77□□□□□ -1.17
USP46-201ENST00000441222 LRP2BPQ9P2M1 347 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 SUPT6HQ7KZ85 1726 aaKnown RBP7.77□□□□□ -1.17
USP46-201ENST00000441222 IGHMBP2P38935 993 aaKnown RBP7.77□□□□□ -1.17
USP46-201ENST00000441222 FKBP4Q02790 459 aaKnown RBP eCLIP7.77□□□□□ -1.17
USP46-201ENST00000441222 SLF2Q8IX21 1173 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 PDRG1Q9NUG6 133 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 PDZRN3Q9UPQ7 1066 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 RAB11FIP3O75154 756 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 CCDC175P0C221 793 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 TMEM266Q2M3C6 531 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 CALCOCO1Q9P1Z2 691 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 HFM1A2PYH4 1435 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 SCAND2PQ9GZW5 306 aaPredicted RBP7.77□□□□□ -1.17
USP46-201ENST00000441222 GGNBP2Q9H3C7 697 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 SLC4A2P04920 1241 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 C6orf163Q5TEZ5 329 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 LARP1Q6PKG0 1096 aaKnown RBP7.77□□□□□ -1.17
USP46-201ENST00000441222 STXBP4Q6ZWJ1 553 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 FILIP1Q7Z7B0 1213 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 OSCARQ8IYS5 282 aa7.77□□□□□ -1.17
USP46-201ENST00000441222 POLA1P09884 1462 aaPredicted RBP7.76□□□□□ -1.17
USP46-201ENST00000441222 SPECC1LQ69YQ0 1117 aa7.76□□□□□ -1.17
USP46-201ENST00000441222 PLVAPQ9BX97 442 aa7.76□□□□□ -1.17
USP46-201ENST00000441222 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.76□□□□□ -1.17
USP46-201ENST00000441222 V9GYY5 206 aaPredicted RBP7.76□□□□□ -1.17
USP46-201ENST00000441222 SMARCA4P51532 1647 aa7.76□□□□□ -1.17
USP46-201ENST00000441222 PLEKHH2Q8IVE3 1493 aa7.76□□□□□ -1.17
USP46-201ENST00000441222 FERP16591 822 aa7.76□□□□□ -1.17
USP46-201ENST00000441222 ATF7IPQ6VMQ6 1270 aa7.76□□□□□ -1.17
USP46-201ENST00000441222 PRKAR2BP31323 418 aa7.76□□□□□ -1.17
USP46-201ENST00000441222 KDM4AO75164 1064 aa7.76□□□□□ -1.17
USP46-201ENST00000441222 STARD3NLO95772 234 aa7.76□□□□□ -1.17
USP46-201ENST00000441222 IFI16Q16666 785 aaKnown RBP7.76□□□□□ -1.17
USP46-201ENST00000441222 NOB1Q9ULX3 412 aaKnown RBP7.76□□□□□ -1.17
USP46-201ENST00000441222 STK3Q13188 491 aa7.76□□□□□ -1.17
USP46-201ENST00000441222 CHD1LQ86WJ1 897 aa7.76□□□□□ -1.17
USP46-201ENST00000441222 ANKRD50Q9ULJ7 1429 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms