RNA–Protein interactions for RNA: ENST00000440271.5

TRIM39-210, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 588 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-210ENST00000440271 NLGN2Q8NFZ4 835 aa29.15■■■□□ 2.26
TRIM39-210ENST00000440271 ZCRB1Q8TBF4 217 aaKnown RBP29.15■■■□□ 2.26
TRIM39-210ENST00000440271 COG3Q96JB2 828 aa29.15■■■□□ 2.26
TRIM39-210ENST00000440271 FAM208AQ9UK61 1670 aaKnown RBP29.15■■■□□ 2.26
TRIM39-210ENST00000440271 FBLN1P23142 703 aa29.14■■■□□ 2.26
TRIM39-210ENST00000440271 AMPHP49418 695 aa29.14■■■□□ 2.26
TRIM39-210ENST00000440271 NSD2O96028 1365 aa29.13■■■□□ 2.25
TRIM39-210ENST00000440271 CCNL1Q9UK58 526 aaPredicted RBP29.12■■■□□ 2.25
TRIM39-210ENST00000440271 GIGYF1O75420 1035 aaPredicted RBP29.11■■■□□ 2.25
TRIM39-210ENST00000440271 TUBGCP6Q96RT7 1819 aa29.1■■■□□ 2.25
TRIM39-210ENST00000440271 LY75O60449 1722 aa29.08■■■□□ 2.25
TRIM39-210ENST00000440271 DOT1LQ8TEK3 1739 aa29.08■■■□□ 2.25
TRIM39-210ENST00000440271 MSH5O43196 834 aa29.08■■■□□ 2.25
TRIM39-210ENST00000440271 COL23A1Q86Y22 540 aaPredicted RBP29.08■■■□□ 2.25
TRIM39-210ENST00000440271 MEGF6O75095 1541 aa29.08■■■□□ 2.25
TRIM39-210ENST00000440271 TESK2Q96S53 571 aa29.07■■■□□ 2.24
TRIM39-210ENST00000440271 NBPF6Q5VWK0 638 aa29.06■■■□□ 2.24
TRIM39-210ENST00000440271 NBPF4Q96M43 638 aa29.06■■■□□ 2.24
TRIM39-210ENST00000440271 USP47Q96K76 1375 aa29.05■■■□□ 2.24
TRIM39-210ENST00000440271 GRIN3BO60391 1043 aa29.05■■■□□ 2.24
TRIM39-210ENST00000440271 YBX3P16989 372 aaKnown RBP eCLIP29.05■■■□□ 2.24
TRIM39-210ENST00000440271 GOLGB1Q14789 3259 aaKnown RBP29.04■■■□□ 2.24
TRIM39-210ENST00000440271 SHANK3Q9BYB0 1731 aa29.04■■■□□ 2.24
TRIM39-210ENST00000440271 RGPD2P0DJD1 1756 aa29.03■■■□□ 2.24
TRIM39-210ENST00000440271 ST20-MTHFSA0A0A6YYL1 179 aa29.03■■■□□ 2.24
TRIM39-210ENST00000440271 RRS1Q15050 365 aaKnown RBP29.02■■■□□ 2.24
TRIM39-210ENST00000440271 TONSLQ96HA7 1378 aa29.01■■■□□ 2.24
TRIM39-210ENST00000440271 CGNL1Q0VF96 1302 aa29.01■■■□□ 2.23
TRIM39-210ENST00000440271 USHBP1Q8N6Y0 703 aa29.01■■■□□ 2.23
TRIM39-210ENST00000440271 RTL1A6NKG5 1358 aa29.01■■■□□ 2.23
TRIM39-210ENST00000440271 MSL1Q68DK7 614 aa29■■■□□ 2.23
TRIM39-210ENST00000440271 RAPGEF4Q8WZA2 1011 aa29■■■□□ 2.23
TRIM39-210ENST00000440271 SLC24A1O60721 1099 aa28.99■■■□□ 2.23
TRIM39-210ENST00000440271 FYB1O15117 783 aa28.97■■■□□ 2.23
TRIM39-210ENST00000440271 TATP17735 454 aaPredicted RBP28.96■■■□□ 2.23
TRIM39-210ENST00000440271 GGNBP2Q9H3C7 697 aa28.96■■■□□ 2.23
TRIM39-210ENST00000440271 HMGB2P26583 209 aaKnown RBP28.94■■■□□ 2.22
TRIM39-210ENST00000440271 FLAD1Q8NFF5 587 aa28.94■■■□□ 2.22
TRIM39-210ENST00000440271 CD2APQ9Y5K6 639 aa28.94■■■□□ 2.22
TRIM39-210ENST00000440271 SMG6Q86US8 1419 aaKnown RBP28.93■■■□□ 2.22
TRIM39-210ENST00000440271 HSP90AB2PQ58FF8 381 aa28.92■■■□□ 2.22
TRIM39-210ENST00000440271 PCDH11XQ9BZA7 1347 aa28.92■■■□□ 2.22
TRIM39-210ENST00000440271 PCDH11YQ9BZA8 1340 aa28.92■■■□□ 2.22
TRIM39-210ENST00000440271 MPRIPQ6WCQ1 1025 aa28.91■■■□□ 2.22
TRIM39-210ENST00000440271 PALLDQ8WX93 1383 aa28.9■■■□□ 2.22
TRIM39-210ENST00000440271 C5P01031 1676 aa28.89■■■□□ 2.21
TRIM39-210ENST00000440271 INSRP06213 1382 aa28.88■■■□□ 2.21
TRIM39-210ENST00000440271 ATP10DQ9P241 1426 aa28.88■■■□□ 2.21
TRIM39-210ENST00000440271 CYP27B1O15528 508 aa28.87■■■□□ 2.21
TRIM39-210ENST00000440271 TMF1P82094 1093 aa28.85■■■□□ 2.21
TRIM39-210ENST00000440271 SMARCC1Q92922 1105 aaPredicted RBP28.85■■■□□ 2.21
TRIM39-210ENST00000440271 IFFO2Q5TF58 517 aa28.84■■■□□ 2.21
TRIM39-210ENST00000440271 AK7Q96M32 723 aa28.84■■■□□ 2.21
TRIM39-210ENST00000440271 FLT4P35916 1363 aa28.84■■■□□ 2.21
TRIM39-210ENST00000440271 CEP350Q5VT06 3117 aa28.84■■■□□ 2.21
TRIM39-210ENST00000440271 AMIGO3Q86WK7 504 aa28.83■■■□□ 2.21
TRIM39-210ENST00000440271 GPBP1L1Q9HC44 474 aaPredicted RBP28.83■■■□□ 2.21
TRIM39-210ENST00000440271 TAF1LQ8IZX4 1826 aa28.83■■■□□ 2.21
TRIM39-210ENST00000440271 KIF24Q5T7B8 1368 aa28.82■■■□□ 2.2
TRIM39-210ENST00000440271 SMIM5Q71RC9 77 aa28.8■■■□□ 2.2
TRIM39-210ENST00000440271 PIGBQ92521 554 aa28.8■■■□□ 2.2
TRIM39-210ENST00000440271 PHF14O94880 888 aa28.79■■■□□ 2.2
TRIM39-210ENST00000440271 C4BP0C0L5 1744 aa28.79■■■□□ 2.2
TRIM39-210ENST00000440271 ADCY9O60503 1353 aa28.78■■■□□ 2.2
TRIM39-210ENST00000440271 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.78■■■□□ 2.2
TRIM39-210ENST00000440271 NKX1-1Q15270 411 aaPredicted RBP28.77■■■□□ 2.2
TRIM39-210ENST00000440271 ZNF526Q8TF50 670 aaPredicted RBP28.77■■■□□ 2.2
TRIM39-210ENST00000440271 IGSF1Q8N6C5 1336 aa28.76■■■□□ 2.19
TRIM39-210ENST00000440271 EMILIN1Q9Y6C2 1016 aa28.76■■■□□ 2.19
TRIM39-210ENST00000440271 TOGARAM1Q9Y4F4 1720 aa28.75■■■□□ 2.19
TRIM39-210ENST00000440271 WWC3Q9ULE0 1092 aa28.75■■■□□ 2.19
TRIM39-210ENST00000440271 ITGB4P16144 1822 aa28.75■■■□□ 2.19
TRIM39-210ENST00000440271 SSFA2P28290 1259 aa28.74■■■□□ 2.19
TRIM39-210ENST00000440271 SPG7Q9UQ90 795 aa28.74■■■□□ 2.19
TRIM39-210ENST00000440271 NSD3Q9BZ95 1437 aa28.74■■■□□ 2.19
TRIM39-210ENST00000440271 LOC102724428A0A0B4J2F2 783 aa28.73■■■□□ 2.19
TRIM39-210ENST00000440271 SIK1P57059 783 aa28.73■■■□□ 2.19
TRIM39-210ENST00000440271 CDCA8Q53HL2 280 aa28.73■■■□□ 2.19
TRIM39-210ENST00000440271 LINC00116Q8NCU8 138 aa28.73■■■□□ 2.19
TRIM39-210ENST00000440271 CARD14Q9BXL6 1004 aa28.73■■■□□ 2.19
TRIM39-210ENST00000440271 UBR3Q6ZT12 1888 aa28.72■■■□□ 2.19
TRIM39-210ENST00000440271 KIF20BQ96Q89 1820 aa28.71■■■□□ 2.19
TRIM39-210ENST00000440271 PPM1GO15355 546 aaPredicted RBP28.71■■■□□ 2.19
TRIM39-210ENST00000440271 HSPA6P17066 643 aa28.71■■■□□ 2.19
TRIM39-210ENST00000440271 PKD1L3Q7Z443 1732 aa28.71■■■□□ 2.19
TRIM39-210ENST00000440271 NCAPD2Q15021 1401 aa28.69■■■□□ 2.18
TRIM39-210ENST00000440271 TMOD3Q9NYL9 352 aa28.68■■■□□ 2.18
TRIM39-210ENST00000440271 ASAP1Q9ULH1 1129 aa28.68■■■□□ 2.18
TRIM39-210ENST00000440271 ITPK1Q13572 414 aa28.67■■■□□ 2.18
TRIM39-210ENST00000440271 EYA1Q99502 592 aa28.67■■■□□ 2.18
TRIM39-210ENST00000440271 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.67■■■□□ 2.18
TRIM39-210ENST00000440271 MAP2P11137 1827 aaKnown RBP28.66■■■□□ 2.18
TRIM39-210ENST00000440271 GNPATO15228 680 aa28.66■■■□□ 2.18
TRIM39-210ENST00000440271 ATP6V1AP38606 617 aa28.66■■■□□ 2.18
TRIM39-210ENST00000440271 WASHC2AQ641Q2 1341 aa28.66■■■□□ 2.18
TRIM39-210ENST00000440271 IFNL2Q8IZJ0 200 aa28.63■■■□□ 2.17
TRIM39-210ENST00000440271 PHKG2P15735 406 aa28.62■■■□□ 2.17
TRIM39-210ENST00000440271 ATG3Q9NT62 314 aa28.62■■■□□ 2.17
TRIM39-210ENST00000440271 KIF3CO14782 793 aa28.61■■■□□ 2.17
TRIM39-210ENST00000440271 MMP10P09238 476 aa28.61■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms