RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 TRIM37O94972 964 aa15.55■□□□□ 0.08
COL28A1-203ENST00000435823 BAG6P46379 1132 aa15.55■□□□□ 0.08
COL28A1-203ENST00000435823 USHBP1Q8N6Y0 703 aa15.55■□□□□ 0.08
COL28A1-203ENST00000435823 MARCH10Q8NA82 808 aaPredicted RBP15.55■□□□□ 0.08
COL28A1-203ENST00000435823 RAPGEF4Q8WZA2 1011 aa15.55■□□□□ 0.08
COL28A1-203ENST00000435823 CNGB1Q14028 1251 aaPredicted RBP15.54■□□□□ 0.08
COL28A1-203ENST00000435823 TATP17735 454 aaPredicted RBP15.53■□□□□ 0.08
COL28A1-203ENST00000435823 DEFB132Q7Z7B7 95 aa15.53■□□□□ 0.08
COL28A1-203ENST00000435823 MEGF6O75095 1541 aa15.53■□□□□ 0.08
COL28A1-203ENST00000435823 BCL9O00512 1426 aa15.52■□□□□ 0.08
COL28A1-203ENST00000435823 TNS1Q9HBL0 1735 aaKnown RBP15.52■□□□□ 0.08
COL28A1-203ENST00000435823 ABCB7O75027 752 aa15.52■□□□□ 0.08
COL28A1-203ENST00000435823 EIF4A2Q14240 407 aaKnown RBP15.52■□□□□ 0.08
COL28A1-203ENST00000435823 APBA3O96018 575 aa15.51■□□□□ 0.07
COL28A1-203ENST00000435823 ZCRB1Q8TBF4 217 aaKnown RBP15.51■□□□□ 0.07
COL28A1-203ENST00000435823 EYA1Q99502 592 aa15.51■□□□□ 0.07
COL28A1-203ENST00000435823 MTHFSP49914 203 aa15.5■□□□□ 0.07
COL28A1-203ENST00000435823 DDX54Q8TDD1 881 aaKnown RBP15.5■□□□□ 0.07
COL28A1-203ENST00000435823 NCAPD2Q15021 1401 aa15.5■□□□□ 0.07
COL28A1-203ENST00000435823 SBF2Q86WG5 1849 aa15.5■□□□□ 0.07
COL28A1-203ENST00000435823 RBM42Q9BTD8 480 aaKnown RBP15.49■□□□□ 0.07
COL28A1-203ENST00000435823 IGSF1Q8N6C5 1336 aa15.48■□□□□ 0.07
COL28A1-203ENST00000435823 EN1Q05925 392 aaPredicted RBP15.48■□□□□ 0.07
COL28A1-203ENST00000435823 CHRDL2Q6WN34 429 aa15.48■□□□□ 0.07
COL28A1-203ENST00000435823 BCL11BQ9C0K0 894 aaPredicted RBP15.48■□□□□ 0.07
COL28A1-203ENST00000435823 ZNF219Q9P2Y4 722 aaPredicted RBP15.47■□□□□ 0.07
COL28A1-203ENST00000435823 PARD3Q8TEW0 1356 aa15.47■□□□□ 0.07
COL28A1-203ENST00000435823 PCDH11XQ9BZA7 1347 aa15.46■□□□□ 0.07
COL28A1-203ENST00000435823 PCDH11YQ9BZA8 1340 aa15.46■□□□□ 0.07
COL28A1-203ENST00000435823 SHANK3Q9BYB0 1731 aa15.46■□□□□ 0.07
COL28A1-203ENST00000435823 SPG7Q9UQ90 795 aa15.46■□□□□ 0.07
COL28A1-203ENST00000435823 NHSQ6T4R5 1651 aa15.45■□□□□ 0.06
COL28A1-203ENST00000435823 IL13P35225 146 aa15.45■□□□□ 0.06
COL28A1-203ENST00000435823 DDX10Q13206 875 aaKnown RBP15.45■□□□□ 0.06
COL28A1-203ENST00000435823 EZH2Q15910 746 aaKnown RBP15.45■□□□□ 0.06
COL28A1-203ENST00000435823 ACSBG1Q96GR2 724 aa15.45■□□□□ 0.06
COL28A1-203ENST00000435823 PLEKHG2Q9H7P9 1386 aa15.45■□□□□ 0.06
COL28A1-203ENST00000435823 PKD1L3Q7Z443 1732 aa15.44■□□□□ 0.06
COL28A1-203ENST00000435823 DIAPH1O60610 1272 aaKnown RBP15.44■□□□□ 0.06
COL28A1-203ENST00000435823 SP7Q8TDD2 431 aaPredicted RBP15.44■□□□□ 0.06
COL28A1-203ENST00000435823 CFAP53Q96M91 514 aa15.44■□□□□ 0.06
COL28A1-203ENST00000435823 CAMKK2Q96RR4 588 aa15.44■□□□□ 0.06
COL28A1-203ENST00000435823 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.44■□□□□ 0.06
COL28A1-203ENST00000435823 KAT6BQ8WYB5 2073 aa15.43■□□□□ 0.06
COL28A1-203ENST00000435823 RGPD3A6NKT7 1758 aaPredicted RBP15.42■□□□□ 0.06
COL28A1-203ENST00000435823 RGPD4Q7Z3J3 1758 aa15.42■□□□□ 0.06
COL28A1-203ENST00000435823 PLSCR1O15162 318 aa15.42■□□□□ 0.06
COL28A1-203ENST00000435823 KCNQ2O43526 872 aa15.42■□□□□ 0.06
COL28A1-203ENST00000435823 PPP2R1AP30153 589 aa15.42■□□□□ 0.06
COL28A1-203ENST00000435823 SULT6B1Q6IMI4 303 aa15.42■□□□□ 0.06
COL28A1-203ENST00000435823 PTF1AQ7RTS3 328 aa15.42■□□□□ 0.06
COL28A1-203ENST00000435823 DOT1LQ8TEK3 1739 aa15.41■□□□□ 0.06
COL28A1-203ENST00000435823 PLEKHO1Q53GL0 409 aaPredicted RBP15.41■□□□□ 0.06
COL28A1-203ENST00000435823 SYTL4Q96C24 671 aaPredicted RBP15.41■□□□□ 0.06
COL28A1-203ENST00000435823 KDRP35968 1356 aa15.4■□□□□ 0.06
COL28A1-203ENST00000435823 CYP27B1O15528 508 aa15.4■□□□□ 0.06
COL28A1-203ENST00000435823 AMOTQ4VCS5 1084 aa15.4■□□□□ 0.06
COL28A1-203ENST00000435823 AEBP1Q8IUX7 1158 aa15.4■□□□□ 0.06
COL28A1-203ENST00000435823 COL3A1P02461 1466 aaPredicted RBP15.4■□□□□ 0.06
COL28A1-203ENST00000435823 RREB1Q92766 1687 aa15.39■□□□□ 0.05
COL28A1-203ENST00000435823 IFNL2Q8IZJ0 200 aa15.39■□□□□ 0.05
COL28A1-203ENST00000435823 BTAF1O14981 1849 aa15.38■□□□□ 0.05
COL28A1-203ENST00000435823 U2SURPO15042 1029 aaKnown RBP15.38■□□□□ 0.05
COL28A1-203ENST00000435823 PRIM1P49642 420 aaKnown RBP15.38■□□□□ 0.05
COL28A1-203ENST00000435823 HMOX1P09601 288 aa15.37■□□□□ 0.05
COL28A1-203ENST00000435823 PHKG2P15735 406 aa15.37■□□□□ 0.05
COL28A1-203ENST00000435823 NKX1-1Q15270 411 aaPredicted RBP15.37■□□□□ 0.05
COL28A1-203ENST00000435823 RALBP1Q15311 655 aa15.37■□□□□ 0.05
COL28A1-203ENST00000435823 NBPF14Q5TI25 921 aa15.37■□□□□ 0.05
COL28A1-203ENST00000435823 NUDCQ9Y266 331 aa15.37■□□□□ 0.05
COL28A1-203ENST00000435823 NUP188Q5SRE5 1749 aa15.37■□□□□ 0.05
COL28A1-203ENST00000435823 HSP90AB1P08238 724 aaKnown RBP15.36■□□□□ 0.05
COL28A1-203ENST00000435823 ZNF530Q6P9A1 599 aaPredicted RBP15.36■□□□□ 0.05
COL28A1-203ENST00000435823 ZNF316A6NFI3 1004 aaPredicted RBP15.35■□□□□ 0.05
COL28A1-203ENST00000435823 TXNRD1Q16881 649 aa15.35■□□□□ 0.05
COL28A1-203ENST00000435823 C1orf141Q5JVX7 400 aa15.35■□□□□ 0.05
COL28A1-203ENST00000435823 MPRIPQ6WCQ1 1025 aa15.33■□□□□ 0.04
COL28A1-203ENST00000435823 TOGARAM1Q9Y4F4 1720 aa15.33■□□□□ 0.04
COL28A1-203ENST00000435823 PSDA5PKW4 1024 aaPredicted RBP15.32■□□□□ 0.04
COL28A1-203ENST00000435823 PROM2Q8N271 834 aa15.32■□□□□ 0.04
COL28A1-203ENST00000435823 DCAF5Q96JK2 942 aa15.32■□□□□ 0.04
COL28A1-203ENST00000435823 TMOD3Q9NYL9 352 aa15.32■□□□□ 0.04
COL28A1-203ENST00000435823 ITGB4P16144 1822 aa15.31■□□□□ 0.04
COL28A1-203ENST00000435823 U2AF1L5P0DN76 240 aaPredicted RBP15.31■□□□□ 0.04
COL28A1-203ENST00000435823 U2AF1Q01081 240 aaKnown RBP eCLIP15.31■□□□□ 0.04
COL28A1-203ENST00000435823 R3HDM1Q15032 1099 aaKnown RBP15.31■□□□□ 0.04
COL28A1-203ENST00000435823 AKAP4Q5JQC9 854 aa15.3■□□□□ 0.04
COL28A1-203ENST00000435823 SLC27A3Q5K4L6 730 aa15.3■□□□□ 0.04
COL28A1-203ENST00000435823 SMARCC1Q92922 1105 aaPredicted RBP15.3■□□□□ 0.04
COL28A1-203ENST00000435823 MYBBP1AQ9BQG0 1328 aaKnown RBP15.3■□□□□ 0.04
COL28A1-203ENST00000435823 STK32BQ9NY57 414 aa15.3■□□□□ 0.04
COL28A1-203ENST00000435823 ERVV-2B6SEH9 535 aa15.29■□□□□ 0.04
COL28A1-203ENST00000435823 PIGBQ92521 554 aa15.29■□□□□ 0.04
COL28A1-203ENST00000435823 LY75O60449 1722 aa15.29■□□□□ 0.04
COL28A1-203ENST00000435823 MTHFSDQ2M296 383 aaKnown RBP15.28■□□□□ 0.04
COL28A1-203ENST00000435823 GAS2L2Q8NHY3 880 aa15.28■□□□□ 0.04
COL28A1-203ENST00000435823 CCNL1Q9UK58 526 aaPredicted RBP15.28■□□□□ 0.04
COL28A1-203ENST00000435823 KDM6AO15550 1401 aaPredicted RBP15.27■□□□□ 0.04
COL28A1-203ENST00000435823 PALLDQ8WX93 1383 aa15.27■□□□□ 0.04
COL28A1-203ENST00000435823 FCHSD2O94868 740 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms