RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 CCDC146Q8IYE0 955 aa16.3■□□□□ 0.2
LINC00339-204ENST00000434233 PHACTR3Q96KR7 559 aa16.3■□□□□ 0.2
LINC00339-204ENST00000434233 MAPK8IP3Q9UPT6 1336 aa16.29■□□□□ 0.2
LINC00339-204ENST00000434233 RBM6P78332 1123 aaKnown RBP16.29■□□□□ 0.2
LINC00339-204ENST00000434233 SPG7Q9UQ90 795 aa16.29■□□□□ 0.2
LINC00339-204ENST00000434233 DISP2A7MBM2 1401 aa16.28■□□□□ 0.2
LINC00339-204ENST00000434233 EXOC5O00471 708 aa16.28■□□□□ 0.2
LINC00339-204ENST00000434233 FAM98CQ17RN3 349 aaKnown RBP16.28■□□□□ 0.2
LINC00339-204ENST00000434233 NCBP3Q53F19 620 aaKnown RBP16.28■□□□□ 0.2
LINC00339-204ENST00000434233 ZCRB1Q8TBF4 217 aaKnown RBP16.28■□□□□ 0.2
LINC00339-204ENST00000434233 GLI3P10071 1580 aa16.27■□□□□ 0.2
LINC00339-204ENST00000434233 APAF1O14727 1248 aa16.27■□□□□ 0.2
LINC00339-204ENST00000434233 MTHFSDQ2M296 383 aaKnown RBP16.27■□□□□ 0.2
LINC00339-204ENST00000434233 GAS2L2Q8NHY3 880 aa16.27■□□□□ 0.2
LINC00339-204ENST00000434233 MEGF6O75095 1541 aa16.27■□□□□ 0.2
LINC00339-204ENST00000434233 PARP4Q9UKK3 1724 aaKnown RBP16.27■□□□□ 0.19
LINC00339-204ENST00000434233 OVOS2A0A0G2JMS6 1433 aa16.27■□□□□ 0.19
LINC00339-204ENST00000434233 RXRBP28702 533 aa16.26■□□□□ 0.19
LINC00339-204ENST00000434233 TMPOP42166 694 aaKnown RBP16.26■□□□□ 0.19
LINC00339-204ENST00000434233 NFE2L2Q16236 605 aa16.26■□□□□ 0.19
LINC00339-204ENST00000434233 NGEFQ8N5V2 710 aa16.26■□□□□ 0.19
LINC00339-204ENST00000434233 WNK3Q9BYP7 1800 aa16.26■□□□□ 0.19
LINC00339-204ENST00000434233 DDB1Q16531 1140 aa16.25■□□□□ 0.19
LINC00339-204ENST00000434233 POTEAQ6S8J7 498 aa16.25■□□□□ 0.19
LINC00339-204ENST00000434233 RIPK4P57078 832 aa16.24■□□□□ 0.19
LINC00339-204ENST00000434233 IFNL2Q8IZJ0 200 aa16.24■□□□□ 0.19
LINC00339-204ENST00000434233 HTATSF1O43719 755 aaKnown RBP16.23■□□□□ 0.19
LINC00339-204ENST00000434233 AKAP4Q5JQC9 854 aa16.23■□□□□ 0.19
LINC00339-204ENST00000434233 ZNF530Q6P9A1 599 aaPredicted RBP16.23■□□□□ 0.19
LINC00339-204ENST00000434233 PKD1L3Q7Z443 1732 aa16.22■□□□□ 0.19
LINC00339-204ENST00000434233 C1orf141Q5JVX7 400 aa16.22■□□□□ 0.19
LINC00339-204ENST00000434233 SEPT12Q8IYM1 358 aa16.22■□□□□ 0.19
LINC00339-204ENST00000434233 PCDH11XQ9BZA7 1347 aa16.21■□□□□ 0.19
LINC00339-204ENST00000434233 PCDH11YQ9BZA8 1340 aa16.21■□□□□ 0.19
LINC00339-204ENST00000434233 GNAT3A8MTJ3 354 aa16.21■□□□□ 0.19
LINC00339-204ENST00000434233 CYP27B1O15528 508 aa16.21■□□□□ 0.19
LINC00339-204ENST00000434233 PHKG2P15735 406 aa16.21■□□□□ 0.19
LINC00339-204ENST00000434233 NKX1-1Q15270 411 aaPredicted RBP16.21■□□□□ 0.19
LINC00339-204ENST00000434233 NEUROD2Q15784 382 aa16.21■□□□□ 0.19
LINC00339-204ENST00000434233 CCDC27Q2M243 656 aa16.21■□□□□ 0.19
LINC00339-204ENST00000434233 DDX54Q8TDD1 881 aaKnown RBP16.21■□□□□ 0.19
LINC00339-204ENST00000434233 THSD7AQ9UPZ6 1657 aa16.21■□□□□ 0.18
LINC00339-204ENST00000434233 DLG5Q8TDM6 1919 aa16.2■□□□□ 0.18
LINC00339-204ENST00000434233 A0A0G2JS52 829 aa16.2■□□□□ 0.18
LINC00339-204ENST00000434233 HSP90AB1P08238 724 aaKnown RBP16.2■□□□□ 0.18
LINC00339-204ENST00000434233 MYT1Q01538 1121 aa16.2■□□□□ 0.18
LINC00339-204ENST00000434233 LMOD3Q0VAK6 560 aa16.2■□□□□ 0.18
LINC00339-204ENST00000434233 PDE3BQ13370 1112 aa16.2■□□□□ 0.18
LINC00339-204ENST00000434233 RRP7AQ9Y3A4 280 aaKnown RBP16.2■□□□□ 0.18
LINC00339-204ENST00000434233 RTF1Q92541 710 aaKnown RBP16.19■□□□□ 0.18
LINC00339-204ENST00000434233 TRIM35Q9UPQ4 493 aa16.19■□□□□ 0.18
LINC00339-204ENST00000434233 TNS2Q63HR2 1409 aa16.19■□□□□ 0.18
LINC00339-204ENST00000434233 MAP3K5Q99683 1374 aa16.18■□□□□ 0.18
LINC00339-204ENST00000434233 HNRNPUQ00839 825 aaKnown RBP eCLIP16.18■□□□□ 0.18
LINC00339-204ENST00000434233 MARCH10Q8NA82 808 aaPredicted RBP16.18■□□□□ 0.18
LINC00339-204ENST00000434233 SHANK3Q9BYB0 1731 aa16.18■□□□□ 0.18
LINC00339-204ENST00000434233 LRRC37A3O60309 1634 aa16.17■□□□□ 0.18
LINC00339-204ENST00000434233 DCAF5Q96JK2 942 aa16.17■□□□□ 0.18
LINC00339-204ENST00000434233 RNMTO43148 476 aaKnown RBP16.16■□□□□ 0.18
LINC00339-204ENST00000434233 MPRIPQ6WCQ1 1025 aa16.16■□□□□ 0.18
LINC00339-204ENST00000434233 WWC1Q8IX03 1113 aa16.16■□□□□ 0.18
LINC00339-204ENST00000434233 IL17REQ8NFR9 667 aa16.16■□□□□ 0.18
LINC00339-204ENST00000434233 LGR6Q9HBX8 967 aa16.16■□□□□ 0.18
LINC00339-204ENST00000434233 SALL2Q9Y467 1007 aaPredicted RBP16.16■□□□□ 0.18
LINC00339-204ENST00000434233 SENP3-EIF4A1A0A087X0R7 540 aa16.15■□□□□ 0.18
LINC00339-204ENST00000434233 KRT27Q7Z3Y8 459 aa16.15■□□□□ 0.18
LINC00339-204ENST00000434233 WDR63Q8IWG1 891 aa16.15■□□□□ 0.18
LINC00339-204ENST00000434233 BRWD3Q6RI45 1802 aa16.13■□□□□ 0.17
LINC00339-204ENST00000434233 ERVV-2B6SEH9 535 aa16.13■□□□□ 0.17
LINC00339-204ENST00000434233 CALD1Q05682 793 aaKnown RBP16.13■□□□□ 0.17
LINC00339-204ENST00000434233 DCTN1Q14203 1278 aa16.13■□□□□ 0.17
LINC00339-204ENST00000434233 MCM10Q7L590 875 aa16.13■□□□□ 0.17
LINC00339-204ENST00000434233 ZNF521Q96K83 1311 aa16.13■□□□□ 0.17
LINC00339-204ENST00000434233 SCN11AQ9UI33 1791 aa16.13■□□□□ 0.17
LINC00339-204ENST00000434233 CEMIPQ8WUJ3 1361 aa16.13■□□□□ 0.17
LINC00339-204ENST00000434233 VIRMAQ69YN4 1812 aaKnown RBP16.12■□□□□ 0.17
LINC00339-204ENST00000434233 ADAMTS7Q9UKP4 1686 aa16.11■□□□□ 0.17
LINC00339-204ENST00000434233 BCL9O00512 1426 aa16.11■□□□□ 0.17
LINC00339-204ENST00000434233 IL16Q14005 1332 aa16.11■□□□□ 0.17
LINC00339-204ENST00000434233 ZBED9Q6R2W3 1325 aa16.11■□□□□ 0.17
LINC00339-204ENST00000434233 RGS12O14924 1447 aa16.11■□□□□ 0.17
LINC00339-204ENST00000434233 KDM6AO15550 1401 aaPredicted RBP16.11■□□□□ 0.17
LINC00339-204ENST00000434233 TEFQ10587 303 aa16.1■□□□□ 0.17
LINC00339-204ENST00000434233 TAF7Q15545 349 aaPredicted RBP16.1■□□□□ 0.17
LINC00339-204ENST00000434233 FAM196AQ6ZSG2 479 aa16.1■□□□□ 0.17
LINC00339-204ENST00000434233 YTHDC1Q96MU7 727 aaKnown RBP16.1■□□□□ 0.17
LINC00339-204ENST00000434233 THUMPD2Q9BTF0 503 aaKnown RBP16.1■□□□□ 0.17
LINC00339-204ENST00000434233 SLC52A2Q9HAB3 445 aa16.1■□□□□ 0.17
LINC00339-204ENST00000434233 KAT6BQ8WYB5 2073 aa16.09■□□□□ 0.17
LINC00339-204ENST00000434233 CABP4P57796 275 aa16.09■□□□□ 0.17
LINC00339-204ENST00000434233 GOLGA2Q08379 1002 aa16.09■□□□□ 0.17
LINC00339-204ENST00000434233 BABAM1Q9NWV8 329 aa16.09■□□□□ 0.17
LINC00339-204ENST00000434233 NFATC2IPQ8NCF5 419 aa16.08■□□□□ 0.16
LINC00339-204ENST00000434233 CFAP44Q96MT7 982 aa16.08■□□□□ 0.16
LINC00339-204ENST00000434233 ZNF853P0CG23 659 aa16.07■□□□□ 0.16
LINC00339-204ENST00000434233 PRIM1P49642 420 aaKnown RBP16.07■□□□□ 0.16
LINC00339-204ENST00000434233 GNAI1P63096 354 aa16.07■□□□□ 0.16
LINC00339-204ENST00000434233 FAM182BQ5T319 152 aa16.07■□□□□ 0.16
LINC00339-204ENST00000434233 IFT57Q9NWB7 429 aa16.07■□□□□ 0.16
LINC00339-204ENST00000434233 CHL1O00533 1208 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms