RNA–Protein interactions for RNA: ENST00000433541.1

TREX1-201, Transcript of three prime repair exonuclease 1, humanhuman

TSL 1 (best) BASIC

Gene TREX1, Length 1,105 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1-201ENST00000433541 SULT6B1Q6IMI4 303 aa20.83■□□□□ 0.93
TREX1-201ENST00000433541 MARCH10Q8NA82 808 aaPredicted RBP20.83■□□□□ 0.93
TREX1-201ENST00000433541 SBF2Q86WG5 1849 aa20.83■□□□□ 0.92
TREX1-201ENST00000433541 SHANK3Q9BYB0 1731 aa20.82■□□□□ 0.92
TREX1-201ENST00000433541 NUDCQ9Y266 331 aa20.82■□□□□ 0.92
TREX1-201ENST00000433541 PKD1L3Q7Z443 1732 aa20.81■□□□□ 0.92
TREX1-201ENST00000433541 TRIM37O94972 964 aa20.81■□□□□ 0.92
TREX1-201ENST00000433541 HMOX1P09601 288 aa20.81■□□□□ 0.92
TREX1-201ENST00000433541 SPG7Q9UQ90 795 aa20.81■□□□□ 0.92
TREX1-201ENST00000433541 PCDH11XQ9BZA7 1347 aa20.8■□□□□ 0.92
TREX1-201ENST00000433541 PCDH11YQ9BZA8 1340 aa20.8■□□□□ 0.92
TREX1-201ENST00000433541 NCAPD2Q15021 1401 aa20.8■□□□□ 0.92
TREX1-201ENST00000433541 CCDC125Q86Z20 511 aa20.8■□□□□ 0.92
TREX1-201ENST00000433541 AEBP1Q8IUX7 1158 aa20.8■□□□□ 0.92
TREX1-201ENST00000433541 COL3A1P02461 1466 aaPredicted RBP20.8■□□□□ 0.92
TREX1-201ENST00000433541 MYBBP1AQ9BQG0 1328 aaKnown RBP20.79■□□□□ 0.92
TREX1-201ENST00000433541 TNS1Q9HBL0 1735 aaKnown RBP20.78■□□□□ 0.92
TREX1-201ENST00000433541 ACSBG1Q96GR2 724 aa20.77■□□□□ 0.92
TREX1-201ENST00000433541 DOT1LQ8TEK3 1739 aa20.77■□□□□ 0.92
TREX1-201ENST00000433541 ANP32CO43423 234 aa20.76■□□□□ 0.91
TREX1-201ENST00000433541 PRKRIP1Q9H875 184 aaPredicted RBP20.76■□□□□ 0.91
TREX1-201ENST00000433541 U2AF1L5P0DN76 240 aaPredicted RBP20.75■□□□□ 0.91
TREX1-201ENST00000433541 BAG6P46379 1132 aa20.75■□□□□ 0.91
TREX1-201ENST00000433541 U2AF1Q01081 240 aaKnown RBP eCLIP20.75■□□□□ 0.91
TREX1-201ENST00000433541 PLEKHO1Q53GL0 409 aaPredicted RBP20.75■□□□□ 0.91
TREX1-201ENST00000433541 SYTL4Q96C24 671 aaPredicted RBP20.75■□□□□ 0.91
TREX1-201ENST00000433541 APBA3O96018 575 aa20.74■□□□□ 0.91
TREX1-201ENST00000433541 NHSQ6T4R5 1651 aa20.73■□□□□ 0.91
TREX1-201ENST00000433541 ZNF530Q6P9A1 599 aaPredicted RBP20.73■□□□□ 0.91
TREX1-201ENST00000433541 KDRP35968 1356 aa20.72■□□□□ 0.91
TREX1-201ENST00000433541 AMOTQ4VCS5 1084 aa20.72■□□□□ 0.91
TREX1-201ENST00000433541 C1orf141Q5JVX7 400 aa20.72■□□□□ 0.91
TREX1-201ENST00000433541 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.72■□□□□ 0.91
TREX1-201ENST00000433541 DEFB132Q7Z7B7 95 aa20.71■□□□□ 0.91
TREX1-201ENST00000433541 IFNL2Q8IZJ0 200 aa20.71■□□□□ 0.91
TREX1-201ENST00000433541 BTAF1O14981 1849 aa20.7■□□□□ 0.9
TREX1-201ENST00000433541 CYP27B1O15528 508 aa20.7■□□□□ 0.9
TREX1-201ENST00000433541 NEFMP07197 916 aa20.7■□□□□ 0.9
TREX1-201ENST00000433541 PLEKHG2Q9H7P9 1386 aa20.7■□□□□ 0.9
TREX1-201ENST00000433541 BCL9O00512 1426 aa20.7■□□□□ 0.9
TREX1-201ENST00000433541 BCL11BQ9C0K0 894 aaPredicted RBP20.69■□□□□ 0.9
TREX1-201ENST00000433541 ITGB4P16144 1822 aa20.69■□□□□ 0.9
TREX1-201ENST00000433541 VIRMAQ69YN4 1812 aaKnown RBP20.69■□□□□ 0.9
TREX1-201ENST00000433541 KCNQ2O43526 872 aa20.68■□□□□ 0.9
TREX1-201ENST00000433541 PRKAR2BP31323 418 aa20.68■□□□□ 0.9
TREX1-201ENST00000433541 PHKG2P15735 406 aa20.67■□□□□ 0.9
TREX1-201ENST00000433541 EN1Q05925 392 aaPredicted RBP20.67■□□□□ 0.9
TREX1-201ENST00000433541 WDR43Q15061 677 aaKnown RBP eCLIP20.67■□□□□ 0.9
TREX1-201ENST00000433541 PRIM1P49642 420 aaKnown RBP20.66■□□□□ 0.9
TREX1-201ENST00000433541 TOGARAM1Q9Y4F4 1720 aa20.66■□□□□ 0.9
TREX1-201ENST00000433541 HSP90AB1P08238 724 aaKnown RBP20.65■□□□□ 0.9
TREX1-201ENST00000433541 PTF1AQ7RTS3 328 aa20.65■□□□□ 0.9
TREX1-201ENST00000433541 RSPH6AQ9H0K4 717 aa20.64■□□□□ 0.89
TREX1-201ENST00000433541 FCHSD2O94868 740 aa20.63■□□□□ 0.89
TREX1-201ENST00000433541 MPRIPQ6WCQ1 1025 aa20.63■□□□□ 0.89
TREX1-201ENST00000433541 PNNQ9H307 717 aaKnown RBP20.63■□□□□ 0.89
TREX1-201ENST00000433541 MAPK8IP3Q9UPT6 1336 aa20.62■□□□□ 0.89
TREX1-201ENST00000433541 EZH2Q15910 746 aaKnown RBP20.62■□□□□ 0.89
TREX1-201ENST00000433541 MTHFSDQ2M296 383 aaKnown RBP20.62■□□□□ 0.89
TREX1-201ENST00000433541 GAS2L2Q8NHY3 880 aa20.62■□□□□ 0.89
TREX1-201ENST00000433541 RGPD3A6NKT7 1758 aaPredicted RBP20.62■□□□□ 0.89
TREX1-201ENST00000433541 RGPD4Q7Z3J3 1758 aa20.62■□□□□ 0.89
TREX1-201ENST00000433541 SCN11AQ9UI33 1791 aa20.62■□□□□ 0.89
TREX1-201ENST00000433541 AKAP4Q5JQC9 854 aa20.61■□□□□ 0.89
TREX1-201ENST00000433541 DCAF5Q96JK2 942 aa20.61■□□□□ 0.89
TREX1-201ENST00000433541 TMOD3Q9NYL9 352 aa20.61■□□□□ 0.89
TREX1-201ENST00000433541 NKX1-1Q15270 411 aaPredicted RBP20.6■□□□□ 0.89
TREX1-201ENST00000433541 RREB1Q92766 1687 aa20.58■□□□□ 0.89
TREX1-201ENST00000433541 CABP4P57796 275 aa20.58■□□□□ 0.89
TREX1-201ENST00000433541 PHACTR3Q96KR7 559 aa20.58■□□□□ 0.89
TREX1-201ENST00000433541 MRS2Q9HD23 443 aa20.58■□□□□ 0.89
TREX1-201ENST00000433541 MAP3K5Q99683 1374 aa20.58■□□□□ 0.88
TREX1-201ENST00000433541 DLG5Q8TDM6 1919 aa20.57■□□□□ 0.88
TREX1-201ENST00000433541 PLSCR1O15162 318 aa20.57■□□□□ 0.88
TREX1-201ENST00000433541 CAMKK2Q96RR4 588 aa20.57■□□□□ 0.88
TREX1-201ENST00000433541 NUP188Q5SRE5 1749 aa20.56■□□□□ 0.88
TREX1-201ENST00000433541 KDM6AO15550 1401 aaPredicted RBP20.56■□□□□ 0.88
TREX1-201ENST00000433541 GNAT3A8MTJ3 354 aa20.56■□□□□ 0.88
TREX1-201ENST00000433541 ERVV-2B6SEH9 535 aa20.55■□□□□ 0.88
TREX1-201ENST00000433541 RTF1Q92541 710 aaKnown RBP20.55■□□□□ 0.88
TREX1-201ENST00000433541 CCDC146Q8IYE0 955 aa20.54■□□□□ 0.88
TREX1-201ENST00000433541 PIGBQ92521 554 aa20.54■□□□□ 0.88
TREX1-201ENST00000433541 TXNRD1Q16881 649 aa20.53■□□□□ 0.88
TREX1-201ENST00000433541 LY75O60449 1722 aa20.53■□□□□ 0.88
TREX1-201ENST00000433541 RNMTO43148 476 aaKnown RBP20.52■□□□□ 0.88
TREX1-201ENST00000433541 TEFQ10587 303 aa20.52■□□□□ 0.88
TREX1-201ENST00000433541 SMARCC1Q92922 1105 aaPredicted RBP20.52■□□□□ 0.88
TREX1-201ENST00000433541 LGR6Q9HBX8 967 aa20.52■□□□□ 0.88
TREX1-201ENST00000433541 ADAMTS8Q9UP79 889 aa20.52■□□□□ 0.88
TREX1-201ENST00000433541 PALLDQ8WX93 1383 aa20.51■□□□□ 0.87
TREX1-201ENST00000433541 CCDC184Q52MB2 194 aa20.51■□□□□ 0.87
TREX1-201ENST00000433541 NBPF14Q5TI25 921 aa20.51■□□□□ 0.87
TREX1-201ENST00000433541 DIEXFQ68CQ4 756 aaKnown RBP20.51■□□□□ 0.87
TREX1-201ENST00000433541 NFATC2IPQ8NCF5 419 aa20.51■□□□□ 0.87
TREX1-201ENST00000433541 PLEKHF1Q96S99 279 aa20.49■□□□□ 0.87
TREX1-201ENST00000433541 SLC52A2Q9HAB3 445 aa20.49■□□□□ 0.87
TREX1-201ENST00000433541 CCNL1Q9UK58 526 aaPredicted RBP20.49■□□□□ 0.87
TREX1-201ENST00000433541 NEUROD2Q15784 382 aa20.48■□□□□ 0.87
TREX1-201ENST00000433541 NFE2L2Q16236 605 aa20.48■□□□□ 0.87
TREX1-201ENST00000433541 RUNDC1Q96C34 613 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms