RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 ATP2B4P23634 1241 aa10.18□□□□□ -0.78
USP54-206ENST00000433394 CLDN10P78369 228 aa10.18□□□□□ -0.78
USP54-206ENST00000433394 DHX9Q08211 1270 aaKnown RBP10.18□□□□□ -0.78
USP54-206ENST00000433394 SND1Q7KZF4 910 aaKnown RBP eCLIP10.18□□□□□ -0.78
USP54-206ENST00000433394 TPCN2Q8NHX9 752 aa10.18□□□□□ -0.78
USP54-206ENST00000433394 MAP4K5Q9Y4K4 846 aa10.18□□□□□ -0.78
USP54-206ENST00000433394 ARID5BQ14865 1188 aa10.17□□□□□ -0.78
USP54-206ENST00000433394 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.17□□□□□ -0.78
USP54-206ENST00000433394 TSGA10IPQ3SY00 556 aa10.16□□□□□ -0.78
USP54-206ENST00000433394 HINFPQ9BQA5 517 aa10.16□□□□□ -0.78
USP54-206ENST00000433394 SSFA2P28290 1259 aa10.15□□□□□ -0.78
USP54-206ENST00000433394 PPP1R18Q6NYC8 613 aa10.13□□□□□ -0.79
USP54-206ENST00000433394 INTS6LQ5JSJ4 861 aaKnown RBP10.12□□□□□ -0.79
USP54-206ENST00000433394 ZBTB7BO15156 539 aaPredicted RBP10.11□□□□□ -0.79
USP54-206ENST00000433394 RC3H1Q5TC82 1133 aaKnown RBP10.11□□□□□ -0.79
USP54-206ENST00000433394 CC2D2BQ6DHV5 1058 aa10.11□□□□□ -0.79
USP54-206ENST00000433394 PCDHGA11Q9Y5H2 935 aa10.11□□□□□ -0.79
USP54-206ENST00000433394 SFI1A8K8P3 1242 aa10.1□□□□□ -0.79
USP54-206ENST00000433394 ERVH48-1M5A8F1 160 aa10.1□□□□□ -0.79
USP54-206ENST00000433394 BACH1O14867 736 aa10.1□□□□□ -0.79
USP54-206ENST00000433394 PRMT3O60678 531 aa10.1□□□□□ -0.79
USP54-206ENST00000433394 FSHRP23945 695 aa10.1□□□□□ -0.79
USP54-206ENST00000433394 FAM69CQ0P6D2 419 aa10.1□□□□□ -0.79
USP54-206ENST00000433394 TXNDC2Q86VQ3 553 aa10.1□□□□□ -0.79
USP54-206ENST00000433394 C1orf216Q8TAB5 229 aa10.1□□□□□ -0.79
USP54-206ENST00000433394 KIAA1024Q9UPX6 916 aa10.1□□□□□ -0.79
USP54-206ENST00000433394 M0R2N6 131 aa10.09□□□□□ -0.79
USP54-206ENST00000433394 SKOR1P84550 965 aa10.09□□□□□ -0.79
USP54-206ENST00000433394 PLA2G2CQ5R387 149 aa10.08□□□□□ -0.8
USP54-206ENST00000433394 MPNDQ8N594 471 aa10.08□□□□□ -0.8
USP54-206ENST00000433394 RGS22Q8NE09 1264 aa10.08□□□□□ -0.8
USP54-206ENST00000433394 CDK15Q96Q40 435 aa10.08□□□□□ -0.8
USP54-206ENST00000433394 PGPEP1Q9NXJ5 209 aa10.08□□□□□ -0.8
USP54-206ENST00000433394 ERVK-9P63128 1117 aa10.07□□□□□ -0.8
USP54-206ENST00000433394 MYT1Q01538 1121 aa10.07□□□□□ -0.8
USP54-206ENST00000433394 NR5A1Q13285 461 aa10.07□□□□□ -0.8
USP54-206ENST00000433394 CYP2U1Q7Z449 544 aa10.07□□□□□ -0.8
USP54-206ENST00000433394 CCDC116Q8IYX3 515 aa10.07□□□□□ -0.8
USP54-206ENST00000433394 CXXC1Q9P0U4 656 aaPredicted RBP10.07□□□□□ -0.8
USP54-206ENST00000433394 ESCO1Q5FWF5 840 aa10.06□□□□□ -0.8
USP54-206ENST00000433394 IFFO2Q5TF58 517 aa10.06□□□□□ -0.8
USP54-206ENST00000433394 PHLDB3Q6NSJ2 640 aa10.06□□□□□ -0.8
USP54-206ENST00000433394 VTI1AQ96AJ9 217 aa10.06□□□□□ -0.8
USP54-206ENST00000433394 PRIMPOLQ96LW4 560 aa10.06□□□□□ -0.8
USP54-206ENST00000433394 BIN2Q9UBW5 565 aaPredicted RBP10.06□□□□□ -0.8
USP54-206ENST00000433394 PTCD1O75127 700 aaKnown RBP10.05□□□□□ -0.8
USP54-206ENST00000433394 ADH1CP00326 375 aa10.05□□□□□ -0.8
USP54-206ENST00000433394 CYLDQ9NQC7 956 aa10.05□□□□□ -0.8
USP54-206ENST00000433394 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.05□□□□□ -0.8
USP54-206ENST00000433394 ABL1P00519 1130 aa10.04□□□□□ -0.8
USP54-206ENST00000433394 ERCC3P19447 782 aa10.04□□□□□ -0.8
USP54-206ENST00000433394 WNT7AO00755 349 aa10.03□□□□□ -0.8
USP54-206ENST00000433394 DKK1O94907 266 aa10.03□□□□□ -0.8
USP54-206ENST00000433394 SLC19A1P41440 591 aa10.03□□□□□ -0.8
USP54-206ENST00000433394 GDF10P55107 478 aa10.03□□□□□ -0.8
USP54-206ENST00000433394 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.03□□□□□ -0.8
USP54-206ENST00000433394 TSEN2Q8NCE0 465 aaKnown RBP10.03□□□□□ -0.8
USP54-206ENST00000433394 CHMP3Q9Y3E7 222 aa10.03□□□□□ -0.8
USP54-206ENST00000433394 EMILIN1Q9Y6C2 1016 aa10.03□□□□□ -0.8
USP54-206ENST00000433394 TLL2Q9Y6L7 1015 aa10.03□□□□□ -0.8
USP54-206ENST00000433394 SOWAHDA6NJG2 315 aa10.02□□□□□ -0.81
USP54-206ENST00000433394 SCTRP47872 440 aa10.02□□□□□ -0.81
USP54-206ENST00000433394 ZNF358Q9NW07 568 aa10.02□□□□□ -0.81
USP54-206ENST00000433394 EGFL7Q9UHF1 273 aa10.02□□□□□ -0.81
USP54-206ENST00000433394 GNRH1P01148 92 aa10.01□□□□□ -0.81
USP54-206ENST00000433394 SERPINB4P48594 390 aa10.01□□□□□ -0.81
USP54-206ENST00000433394 TAS1R3Q7RTX0 852 aa10.01□□□□□ -0.81
USP54-206ENST00000433394 GLYCTKQ8IVS8 523 aa10.01□□□□□ -0.81
USP54-206ENST00000433394 GAS2L2Q8NHY3 880 aa10.01□□□□□ -0.81
USP54-206ENST00000433394 SLAIN2Q9P270 581 aa10.01□□□□□ -0.81
USP54-206ENST00000433394 AMOTL2Q9Y2J4 779 aa10.01□□□□□ -0.81
USP54-206ENST00000433394 WASF2Q9Y6W5 498 aa10.01□□□□□ -0.81
USP54-206ENST00000433394 WASLO00401 505 aaPredicted RBP10□□□□□ -0.81
USP54-206ENST00000433394 FOXO3O43524 673 aa10□□□□□ -0.81
USP54-206ENST00000433394 RGS20O76081 388 aa10□□□□□ -0.81
USP54-206ENST00000433394 GRM5P41594 1212 aa10□□□□□ -0.81
USP54-206ENST00000433394 OCLNQ16625 522 aa10□□□□□ -0.81
USP54-206ENST00000433394 PPP1R26Q5T8A7 1209 aaPredicted RBP10□□□□□ -0.81
USP54-206ENST00000433394 FOXD4L5Q5VV16 416 aaPredicted RBP10□□□□□ -0.81
USP54-206ENST00000433394 ZNF784Q8NCA9 323 aaPredicted RBP10□□□□□ -0.81
USP54-206ENST00000433394 FOXD4L4Q8WXT5 416 aaPredicted RBP10□□□□□ -0.81
USP54-206ENST00000433394 TMPRSS4Q9NRS4 437 aa10□□□□□ -0.81
USP54-206ENST00000433394 A0A0G2JS52 829 aa9.99□□□□□ -0.81
USP54-206ENST00000433394 IGFBP4P22692 258 aa9.99□□□□□ -0.81
USP54-206ENST00000433394 WEE1P30291 646 aa9.99□□□□□ -0.81
USP54-206ENST00000433394 RBM25P49756 843 aaKnown RBP9.99□□□□□ -0.81
USP54-206ENST00000433394 LIAT1Q6ZQX7 453 aa9.99□□□□□ -0.81
USP54-206ENST00000433394 OSBPL3Q9H4L5 887 aa9.99□□□□□ -0.81
USP54-206ENST00000433394 INHAP05111 366 aa9.98□□□□□ -0.81
USP54-206ENST00000433394 SF3B2Q13435 895 aaKnown RBP9.98□□□□□ -0.81
USP54-206ENST00000433394 MRGPRX2Q96LB1 330 aa9.98□□□□□ -0.81
USP54-206ENST00000433394 MKNK1Q9BUB5 465 aa9.98□□□□□ -0.81
USP54-206ENST00000433394 SERTAD1Q9UHV2 236 aa9.98□□□□□ -0.81
USP54-206ENST00000433394 H3BRB1 525 aa9.97□□□□□ -0.81
USP54-206ENST00000433394 ALDH1A1P00352 501 aa9.97□□□□□ -0.81
USP54-206ENST00000433394 MARSP56192 900 aaKnown RBP9.97□□□□□ -0.81
USP54-206ENST00000433394 SCG3Q8WXD2 468 aaKnown RBP9.97□□□□□ -0.81
USP54-206ENST00000433394 COL26A1Q96A83 441 aa9.97□□□□□ -0.81
USP54-206ENST00000433394 BCL11AQ9H165 835 aa9.97□□□□□ -0.81
USP54-206ENST00000433394 TUT1Q9H6E5 874 aaKnown RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms