RNA–Protein interactions for RNA: ENST00000428776.1

HMGB3P4-201, Transcript of high mobility group box 3 pseudogene 4, humanhuman

BASIC

Gene HMGB3P4, Length 514 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P4-201ENST00000428776 GNAT3A8MTJ3 354 aa16.55■□□□□ 0.24
HMGB3P4-201ENST00000428776 TOM1L2Q6ZVM7 507 aa16.55■□□□□ 0.24
HMGB3P4-201ENST00000428776 RTF1Q92541 710 aaKnown RBP16.55■□□□□ 0.24
HMGB3P4-201ENST00000428776 BTG4Q9NY30 223 aa16.55■□□□□ 0.24
HMGB3P4-201ENST00000428776 RCAN3Q9UKA8 241 aa16.55■□□□□ 0.24
HMGB3P4-201ENST00000428776 TATP17735 454 aaPredicted RBP16.54■□□□□ 0.24
HMGB3P4-201ENST00000428776 GNAI1P63096 354 aa16.54■□□□□ 0.24
HMGB3P4-201ENST00000428776 CARD10Q9BWT7 1032 aa16.54■□□□□ 0.24
HMGB3P4-201ENST00000428776 WNK3Q9BYP7 1800 aa16.54■□□□□ 0.24
HMGB3P4-201ENST00000428776 SCN11AQ9UI33 1791 aa16.54■□□□□ 0.24
HMGB3P4-201ENST00000428776 CRB1P82279 1406 aa16.53■□□□□ 0.24
HMGB3P4-201ENST00000428776 STRN4Q9NRL3 753 aa16.53■□□□□ 0.24
HMGB3P4-201ENST00000428776 IFT57Q9NWB7 429 aa16.53■□□□□ 0.24
HMGB3P4-201ENST00000428776 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.53■□□□□ 0.24
HMGB3P4-201ENST00000428776 SPATA31A6Q5VVP1 1343 aa16.52■□□□□ 0.24
HMGB3P4-201ENST00000428776 FANCIQ9NVI1 1328 aa16.52■□□□□ 0.24
HMGB3P4-201ENST00000428776 MEGF6O75095 1541 aa16.52■□□□□ 0.24
HMGB3P4-201ENST00000428776 NUTM2BA6NNL0 878 aaPredicted RBP16.52■□□□□ 0.24
HMGB3P4-201ENST00000428776 NUTM2EB1AL46 878 aaPredicted RBP16.52■□□□□ 0.24
HMGB3P4-201ENST00000428776 ADAMTS2O95450 1211 aa16.52■□□□□ 0.24
HMGB3P4-201ENST00000428776 ZNF853P0CG23 659 aa16.52■□□□□ 0.24
HMGB3P4-201ENST00000428776 NUTM2AQ8IVF1 878 aaPredicted RBP16.52■□□□□ 0.24
HMGB3P4-201ENST00000428776 CFAP44Q96MT7 982 aa16.52■□□□□ 0.24
HMGB3P4-201ENST00000428776 THUMPD2Q9BTF0 503 aaKnown RBP16.52■□□□□ 0.24
HMGB3P4-201ENST00000428776 ADAMTS7Q9UKP4 1686 aa16.52■□□□□ 0.23
HMGB3P4-201ENST00000428776 RNF123Q5XPI4 1314 aa16.51■□□□□ 0.23
HMGB3P4-201ENST00000428776 DCTN1Q14203 1278 aa16.51■□□□□ 0.23
HMGB3P4-201ENST00000428776 AKAP4Q5JQC9 854 aa16.51■□□□□ 0.23
HMGB3P4-201ENST00000428776 ZNF530Q6P9A1 599 aaPredicted RBP16.51■□□□□ 0.23
HMGB3P4-201ENST00000428776 LARP1Q6PKG0 1096 aaKnown RBP16.51■□□□□ 0.23
HMGB3P4-201ENST00000428776 MCM10Q7L590 875 aa16.51■□□□□ 0.23
HMGB3P4-201ENST00000428776 SPG7Q9UQ90 795 aa16.51■□□□□ 0.23
HMGB3P4-201ENST00000428776 GTF3C3Q9Y5Q9 886 aa16.51■□□□□ 0.23
HMGB3P4-201ENST00000428776 NEFLP07196 543 aa16.5■□□□□ 0.23
HMGB3P4-201ENST00000428776 CT47B1P0C2W7 299 aaPredicted RBP16.5■□□□□ 0.23
HMGB3P4-201ENST00000428776 C1orf141Q5JVX7 400 aa16.5■□□□□ 0.23
HMGB3P4-201ENST00000428776 TSR2Q969E8 191 aaKnown RBP16.5■□□□□ 0.23
HMGB3P4-201ENST00000428776 SIPA1L3O60292 1781 aaPredicted RBP16.5■□□□□ 0.23
HMGB3P4-201ENST00000428776 SHANK3Q9BYB0 1731 aa16.5■□□□□ 0.23
HMGB3P4-201ENST00000428776 OVOS2A0A0G2JMS6 1433 aa16.49■□□□□ 0.23
HMGB3P4-201ENST00000428776 HSPA1LP34931 641 aa16.49■□□□□ 0.23
HMGB3P4-201ENST00000428776 LAS1LQ9Y4W2 734 aaKnown RBP16.49■□□□□ 0.23
HMGB3P4-201ENST00000428776 SLIT2O94813 1529 aa16.49■□□□□ 0.23
HMGB3P4-201ENST00000428776 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.48■□□□□ 0.23
HMGB3P4-201ENST00000428776 CHL1O00533 1208 aa16.47■□□□□ 0.23
HMGB3P4-201ENST00000428776 IL2RBP14784 551 aa16.47■□□□□ 0.23
HMGB3P4-201ENST00000428776 IL17REQ8NFR9 667 aa16.47■□□□□ 0.23
HMGB3P4-201ENST00000428776 MBIPQ9NS73 344 aa16.47■□□□□ 0.23
HMGB3P4-201ENST00000428776 CEMIPQ8WUJ3 1361 aa16.47■□□□□ 0.23
HMGB3P4-201ENST00000428776 KDM3BQ7LBC6 1761 aa16.46■□□□□ 0.23
HMGB3P4-201ENST00000428776 EXOSC9Q06265 439 aaKnown RBP16.46■□□□□ 0.23
HMGB3P4-201ENST00000428776 BABAM1Q9NWV8 329 aa16.46■□□□□ 0.23
HMGB3P4-201ENST00000428776 IFNL2Q8IZJ0 200 aa16.45■□□□□ 0.22
HMGB3P4-201ENST00000428776 TAF7Q15545 349 aaPredicted RBP16.44■□□□□ 0.22
HMGB3P4-201ENST00000428776 ZCRB1Q8TBF4 217 aaKnown RBP16.44■□□□□ 0.22
HMGB3P4-201ENST00000428776 LGR6Q9HBX8 967 aa16.44■□□□□ 0.22
HMGB3P4-201ENST00000428776 LRP6O75581 1613 aa16.44■□□□□ 0.22
HMGB3P4-201ENST00000428776 CACNA1FO60840 1977 aa16.44■□□□□ 0.22
HMGB3P4-201ENST00000428776 RNMTO43148 476 aaKnown RBP16.43■□□□□ 0.22
HMGB3P4-201ENST00000428776 HSP90AB1P08238 724 aaKnown RBP16.43■□□□□ 0.22
HMGB3P4-201ENST00000428776 PHKG2P15735 406 aa16.43■□□□□ 0.22
HMGB3P4-201ENST00000428776 RRP1P56182 461 aaKnown RBP16.43■□□□□ 0.22
HMGB3P4-201ENST00000428776 MPRIPQ6WCQ1 1025 aa16.43■□□□□ 0.22
HMGB3P4-201ENST00000428776 ZNF428Q96B54 188 aa16.43■□□□□ 0.22
HMGB3P4-201ENST00000428776 PCDH11XQ9BZA7 1347 aa16.43■□□□□ 0.22
HMGB3P4-201ENST00000428776 PCDH11YQ9BZA8 1340 aa16.43■□□□□ 0.22
HMGB3P4-201ENST00000428776 FKBP8Q14318 412 aa16.42■□□□□ 0.22
HMGB3P4-201ENST00000428776 NGLY1Q96IV0 654 aa16.42■□□□□ 0.22
HMGB3P4-201ENST00000428776 USP35Q9P2H5 1018 aa16.42■□□□□ 0.22
HMGB3P4-201ENST00000428776 THRAP3Q9Y2W1 955 aaKnown RBP16.42■□□□□ 0.22
HMGB3P4-201ENST00000428776 DISP2A7MBM2 1401 aa16.42■□□□□ 0.22
HMGB3P4-201ENST00000428776 CYP27B1O15528 508 aa16.41■□□□□ 0.22
HMGB3P4-201ENST00000428776 RARSP54136 660 aaKnown RBP16.41■□□□□ 0.22
HMGB3P4-201ENST00000428776 TEFQ10587 303 aa16.41■□□□□ 0.22
HMGB3P4-201ENST00000428776 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.41■□□□□ 0.22
HMGB3P4-201ENST00000428776 DCAF5Q96JK2 942 aa16.41■□□□□ 0.22
HMGB3P4-201ENST00000428776 C8orf37Q96NL8 207 aa16.41■□□□□ 0.22
HMGB3P4-201ENST00000428776 CDCA7Q9BWT1 371 aaPredicted RBP16.41■□□□□ 0.22
HMGB3P4-201ENST00000428776 TSPYL4Q9UJ04 414 aa16.41■□□□□ 0.22
HMGB3P4-201ENST00000428776 SPATA31A1Q5TZJ5 1347 aa16.41■□□□□ 0.22
HMGB3P4-201ENST00000428776 ERICH6BQ5W0A0 696 aa16.4■□□□□ 0.22
HMGB3P4-201ENST00000428776 UNC5CLQ8IV45 518 aa16.4■□□□□ 0.22
HMGB3P4-201ENST00000428776 FNBP4Q8N3X1 1017 aaPredicted RBP16.4■□□□□ 0.22
HMGB3P4-201ENST00000428776 BCL9LQ86UU0 1499 aa16.4■□□□□ 0.22
HMGB3P4-201ENST00000428776 SPATA31A5Q5VU36 1347 aa16.4■□□□□ 0.22
HMGB3P4-201ENST00000428776 SPATA31A7Q8IWB4 1347 aa16.4■□□□□ 0.22
HMGB3P4-201ENST00000428776 KDM6AO15550 1401 aaPredicted RBP16.39■□□□□ 0.21
HMGB3P4-201ENST00000428776 MRC1P22897 1456 aa16.38■□□□□ 0.21
HMGB3P4-201ENST00000428776 VAMP4O75379 141 aa16.38■□□□□ 0.21
HMGB3P4-201ENST00000428776 BCAR3O75815 825 aa16.38■□□□□ 0.21
HMGB3P4-201ENST00000428776 NKX1-1Q15270 411 aaPredicted RBP16.38■□□□□ 0.21
HMGB3P4-201ENST00000428776 TWISTNBQ3B726 338 aaPredicted RBP16.38■□□□□ 0.21
HMGB3P4-201ENST00000428776 ALDH1L2Q3SY69 923 aa16.38■□□□□ 0.21
HMGB3P4-201ENST00000428776 C8orf58Q8NAV2 365 aa16.38■□□□□ 0.21
HMGB3P4-201ENST00000428776 MIS18AQ9NYP9 233 aa16.38■□□□□ 0.21
HMGB3P4-201ENST00000428776 ITGB4P16144 1822 aa16.38■□□□□ 0.21
HMGB3P4-201ENST00000428776 VPS72Q15906 364 aa16.37■□□□□ 0.21
HMGB3P4-201ENST00000428776 MEX3CQ5U5Q3 659 aaKnown RBP16.37■□□□□ 0.21
HMGB3P4-201ENST00000428776 TSPYL6Q8N831 410 aa16.37■□□□□ 0.21
HMGB3P4-201ENST00000428776 IRX6P78412 446 aaPredicted RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms