RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 RAPGEF6Q8TEU7 1601 aa17.2■□□□□ 0.34
PTPRU-204ENST00000428026 WDR33Q9C0J8 1336 aaKnown RBP17.2■□□□□ 0.34
PTPRU-204ENST00000428026 SYCE3A1L190 88 aa17.2■□□□□ 0.34
PTPRU-204ENST00000428026 PDCL2Q8N4E4 241 aa17.2■□□□□ 0.34
PTPRU-204ENST00000428026 BRMS1Q9HCU9 246 aa17.2■□□□□ 0.34
PTPRU-204ENST00000428026 TWISTNBQ3B726 338 aaPredicted RBP17.19■□□□□ 0.34
PTPRU-204ENST00000428026 ODF2Q5BJF6 829 aa17.19■□□□□ 0.34
PTPRU-204ENST00000428026 FILIP1Q7Z7B0 1213 aa17.19■□□□□ 0.34
PTPRU-204ENST00000428026 PNISRQ8TF01 805 aaKnown RBP17.19■□□□□ 0.34
PTPRU-204ENST00000428026 ZNF428Q96B54 188 aa17.19■□□□□ 0.34
PTPRU-204ENST00000428026 ATAD2Q6PL18 1390 aa17.19■□□□□ 0.34
PTPRU-204ENST00000428026 ZNF396Q96N95 335 aaPredicted RBP17.19■□□□□ 0.34
PTPRU-204ENST00000428026 GNAI3P08754 354 aa17.19■□□□□ 0.34
PTPRU-204ENST00000428026 ME1P48163 572 aa17.18■□□□□ 0.34
PTPRU-204ENST00000428026 ZNF530Q6P9A1 599 aaPredicted RBP17.18■□□□□ 0.34
PTPRU-204ENST00000428026 NUP153P49790 1475 aaKnown RBP17.18■□□□□ 0.34
PTPRU-204ENST00000428026 CCDC43Q96MW1 224 aaKnown RBP17.18■□□□□ 0.34
PTPRU-204ENST00000428026 ADAMTS12P58397 1594 aa17.18■□□□□ 0.34
PTPRU-204ENST00000428026 FAM193AP78312 1265 aa17.18■□□□□ 0.34
PTPRU-204ENST00000428026 TNRQ92752 1358 aa17.18■□□□□ 0.34
PTPRU-204ENST00000428026 CYP46A1Q9Y6A2 500 aa17.17■□□□□ 0.34
PTPRU-204ENST00000428026 WDR62O43379 1518 aa17.17■□□□□ 0.34
PTPRU-204ENST00000428026 XBP1P17861 261 aa17.17■□□□□ 0.34
PTPRU-204ENST00000428026 KRT85P78386 507 aa17.17■□□□□ 0.34
PTPRU-204ENST00000428026 CABP4P57796 275 aa17.16■□□□□ 0.34
PTPRU-204ENST00000428026 PHF8Q9UPP1 1060 aa17.16■□□□□ 0.34
PTPRU-204ENST00000428026 LARP1BQ659C4 914 aaKnown RBP17.16■□□□□ 0.34
PTPRU-204ENST00000428026 CHD1LQ86WJ1 897 aa17.16■□□□□ 0.34
PTPRU-204ENST00000428026 KIAA0754O94854 1291 aa17.16■□□□□ 0.34
PTPRU-204ENST00000428026 HSPA2P54652 639 aa17.16■□□□□ 0.34
PTPRU-204ENST00000428026 PPP1R1BQ9UD71 204 aaPredicted RBP17.16■□□□□ 0.34
PTPRU-204ENST00000428026 MAGEC2Q9UBF1 373 aaPredicted RBP17.15■□□□□ 0.34
PTPRU-204ENST00000428026 MVPQ14764 893 aaKnown RBP17.15■□□□□ 0.34
PTPRU-204ENST00000428026 GNAI2P04899 355 aa17.15■□□□□ 0.34
PTPRU-204ENST00000428026 CENPHQ9H3R5 247 aa17.15■□□□□ 0.34
PTPRU-204ENST00000428026 PPFIBP1Q86W92 1011 aa17.14■□□□□ 0.33
PTPRU-204ENST00000428026 SPG7Q9UQ90 795 aa17.14■□□□□ 0.33
PTPRU-204ENST00000428026 AEBP1Q8IUX7 1158 aa17.14■□□□□ 0.33
PTPRU-204ENST00000428026 CIZ1Q9ULV3 898 aaPredicted RBP17.13■□□□□ 0.33
PTPRU-204ENST00000428026 CCDC30Q5VVM6 783 aa17.13■□□□□ 0.33
PTPRU-204ENST00000428026 NOS1P29475 1434 aa17.13■□□□□ 0.33
PTPRU-204ENST00000428026 CCDC102AQ96A19 550 aa17.13■□□□□ 0.33
PTPRU-204ENST00000428026 SPATA32Q96LK8 384 aa17.13■□□□□ 0.33
PTPRU-204ENST00000428026 NUP62CLQ9H1M0 184 aa17.13■□□□□ 0.33
PTPRU-204ENST00000428026 SLC4A2P04920 1241 aa17.13■□□□□ 0.33
PTPRU-204ENST00000428026 CAMK4Q16566 473 aa17.13■□□□□ 0.33
PTPRU-204ENST00000428026 KDM5BQ9UGL1 1544 aa17.12■□□□□ 0.33
PTPRU-204ENST00000428026 ERLIN1O75477 346 aa17.12■□□□□ 0.33
PTPRU-204ENST00000428026 ATF7IPQ6VMQ6 1270 aa17.12■□□□□ 0.33
PTPRU-204ENST00000428026 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.12■□□□□ 0.33
PTPRU-204ENST00000428026 MAP3K1Q13233 1512 aa17.12■□□□□ 0.33
PTPRU-204ENST00000428026 MYO6Q9UM54 1294 aa17.12■□□□□ 0.33
PTPRU-204ENST00000428026 LRRCC1Q9C099 1032 aa17.12■□□□□ 0.33
PTPRU-204ENST00000428026 EIF3JO75822 258 aaKnown RBP17.11■□□□□ 0.33
PTPRU-204ENST00000428026 WASLO00401 505 aaPredicted RBP17.11■□□□□ 0.33
PTPRU-204ENST00000428026 KCNH5Q8NCM2 988 aa17.11■□□□□ 0.33
PTPRU-204ENST00000428026 TRERF1Q96PN7 1200 aa17.11■□□□□ 0.33
PTPRU-204ENST00000428026 CCDC181Q5TID7 509 aa17.11■□□□□ 0.33
PTPRU-204ENST00000428026 TRAPPC8Q9Y2L5 1435 aa17.11■□□□□ 0.33
PTPRU-204ENST00000428026 GOLGA6L10A6NI86 522 aa17.11■□□□□ 0.33
PTPRU-204ENST00000428026 NGLY1Q96IV0 654 aa17.11■□□□□ 0.33
PTPRU-204ENST00000428026 ZNHIT6Q9NWK9 470 aaKnown RBP17.11■□□□□ 0.33
PTPRU-204ENST00000428026 SART3Q15020 963 aaKnown RBP17.1■□□□□ 0.33
PTPRU-204ENST00000428026 SIL1Q9H173 461 aa17.1■□□□□ 0.33
PTPRU-204ENST00000428026 NME9Q86XW9 330 aa17.1■□□□□ 0.33
PTPRU-204ENST00000428026 A2MP01023 1474 aa17.1■□□□□ 0.33
PTPRU-204ENST00000428026 HIP1O00291 1037 aa17.1■□□□□ 0.33
PTPRU-204ENST00000428026 ZNF518AQ6AHZ1 1483 aa17.1■□□□□ 0.33
PTPRU-204ENST00000428026 KIAA0556O60303 1618 aa17.09■□□□□ 0.33
PTPRU-204ENST00000428026 CNKSR2Q8WXI2 1034 aa17.09■□□□□ 0.33
PTPRU-204ENST00000428026 UBXN4Q92575 508 aa17.09■□□□□ 0.33
PTPRU-204ENST00000428026 SYCP2Q9BX26 1530 aa17.09■□□□□ 0.33
PTPRU-204ENST00000428026 NSD3Q9BZ95 1437 aa17.09■□□□□ 0.33
PTPRU-204ENST00000428026 DEF6Q9H4E7 631 aa17.09■□□□□ 0.33
PTPRU-204ENST00000428026 JMYQ8N9B5 988 aa17.08■□□□□ 0.33
PTPRU-204ENST00000428026 JAKMIP1Q96N16 626 aaKnown RBP17.08■□□□□ 0.33
PTPRU-204ENST00000428026 UGGT2Q9NYU1 1516 aa17.08■□□□□ 0.33
PTPRU-204ENST00000428026 UBAP1LF5GYI3 381 aa17.08■□□□□ 0.33
PTPRU-204ENST00000428026 C20orf194Q5TEA3 1177 aa17.08■□□□□ 0.33
PTPRU-204ENST00000428026 KIF6Q6ZMV9 814 aa17.08■□□□□ 0.33
PTPRU-204ENST00000428026 UPF3BQ9BZI7 483 aaKnown RBP17.08■□□□□ 0.33
PTPRU-204ENST00000428026 ZHX1Q9UKY1 873 aaPredicted RBP17.08■□□□□ 0.33
PTPRU-204ENST00000428026 CEP57L1Q8IYX8 460 aa17.08■□□□□ 0.32
PTPRU-204ENST00000428026 PDRG1Q9NUG6 133 aa17.08■□□□□ 0.32
PTPRU-204ENST00000428026 TXLNAP40222 546 aa17.08■□□□□ 0.32
PTPRU-204ENST00000428026 CDK5RAP3Q96JB5 506 aa17.08■□□□□ 0.32
PTPRU-204ENST00000428026 CWC27Q6UX04 472 aaKnown RBP17.07■□□□□ 0.32
PTPRU-204ENST00000428026 KRT28Q7Z3Y7 464 aa17.07■□□□□ 0.32
PTPRU-204ENST00000428026 FERMT3Q86UX7 667 aa17.07■□□□□ 0.32
PTPRU-204ENST00000428026 C11orf95C9JLR9 678 aaPredicted RBP17.07■□□□□ 0.32
PTPRU-204ENST00000428026 NEFHP12036 1026 aa17.07■□□□□ 0.32
PTPRU-204ENST00000428026 TAX1BP1Q86VP1 789 aa17.07■□□□□ 0.32
PTPRU-204ENST00000428026 TBC1D2BQ9UPU7 963 aa17.07■□□□□ 0.32
PTPRU-204ENST00000428026 LRRFIP2Q9Y608 721 aaKnown RBP17.07■□□□□ 0.32
PTPRU-204ENST00000428026 IBSPP21815 317 aaPredicted RBP17.07■□□□□ 0.32
PTPRU-204ENST00000428026 FAM135AQ9P2D6 1515 aa17.07■□□□□ 0.32
PTPRU-204ENST00000428026 NUP160Q12769 1436 aa17.06■□□□□ 0.32
PTPRU-204ENST00000428026 ABCC2Q92887 1545 aa17.06■□□□□ 0.32
PTPRU-204ENST00000428026 ANKRD1Q15327 319 aa17.06■□□□□ 0.32
PTPRU-204ENST00000428026 CADPS2Q86UW7 1296 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms