RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 PRIM1P49642 420 aaKnown RBP18.15■□□□□ 0.5
VRK3-203ENST00000424804 ZCRB1Q8TBF4 217 aaKnown RBP18.15■□□□□ 0.5
VRK3-203ENST00000424804 MTFR1LQ9H019 292 aa18.15■□□□□ 0.5
VRK3-203ENST00000424804 CLSPNQ9HAW4 1339 aa18.15■□□□□ 0.5
VRK3-203ENST00000424804 LY75O60449 1722 aa18.15■□□□□ 0.5
VRK3-203ENST00000424804 DOT1LQ8TEK3 1739 aa18.15■□□□□ 0.5
VRK3-203ENST00000424804 KIF20BQ96Q89 1820 aa18.14■□□□□ 0.5
VRK3-203ENST00000424804 COL24A1Q17RW2 1714 aa18.14■□□□□ 0.49
VRK3-203ENST00000424804 QSER1Q2KHR3 1735 aa18.13■□□□□ 0.49
VRK3-203ENST00000424804 HSP90AB2PQ58FF8 381 aa18.13■□□□□ 0.49
VRK3-203ENST00000424804 USHBP1Q8N6Y0 703 aa18.13■□□□□ 0.49
VRK3-203ENST00000424804 TUBGCP6Q96RT7 1819 aa18.13■□□□□ 0.49
VRK3-203ENST00000424804 KCNQ4P56696 695 aa18.12■□□□□ 0.49
VRK3-203ENST00000424804 SYT17Q9BSW7 474 aa18.12■□□□□ 0.49
VRK3-203ENST00000424804 INSRP06213 1382 aa18.12■□□□□ 0.49
VRK3-203ENST00000424804 YY1P25490 414 aa18.11■□□□□ 0.49
VRK3-203ENST00000424804 SLC27A3Q5K4L6 730 aa18.11■□□□□ 0.49
VRK3-203ENST00000424804 FHDC1Q9C0D6 1143 aaPredicted RBP18.11■□□□□ 0.49
VRK3-203ENST00000424804 TIMELESSQ9UNS1 1208 aa18.1■□□□□ 0.49
VRK3-203ENST00000424804 PNPLA7Q6ZV29 1317 aa18.09■□□□□ 0.49
VRK3-203ENST00000424804 NCAPD2Q15021 1401 aa18.08■□□□□ 0.49
VRK3-203ENST00000424804 KIF24Q5T7B8 1368 aa18.08■□□□□ 0.49
VRK3-203ENST00000424804 CDCA8Q53HL2 280 aa18.08■□□□□ 0.48
VRK3-203ENST00000424804 EMILIN1Q9Y6C2 1016 aa18.08■□□□□ 0.48
VRK3-203ENST00000424804 NSD3Q9BZ95 1437 aa18.07■□□□□ 0.48
VRK3-203ENST00000424804 FLT4P35916 1363 aa18.07■□□□□ 0.48
VRK3-203ENST00000424804 CGNL1Q0VF96 1302 aa18.07■□□□□ 0.48
VRK3-203ENST00000424804 ARXQ96QS3 562 aa18.07■□□□□ 0.48
VRK3-203ENST00000424804 ANKRD26Q9UPS8 1709 aa18.06■□□□□ 0.48
VRK3-203ENST00000424804 MAP3K5Q99683 1374 aa18.06■□□□□ 0.48
VRK3-203ENST00000424804 SYTL4Q96C24 671 aaPredicted RBP18.06■□□□□ 0.48
VRK3-203ENST00000424804 MAP2P11137 1827 aaKnown RBP18.05■□□□□ 0.48
VRK3-203ENST00000424804 CYP27B1O15528 508 aa18.05■□□□□ 0.48
VRK3-203ENST00000424804 TOGARAM1Q9Y4F4 1720 aa18.04■□□□□ 0.48
VRK3-203ENST00000424804 TATP17735 454 aaPredicted RBP18.04■□□□□ 0.48
VRK3-203ENST00000424804 SLC16A10Q8TF71 515 aa18.04■□□□□ 0.48
VRK3-203ENST00000424804 PKD1L3Q7Z443 1732 aa18.03■□□□□ 0.48
VRK3-203ENST00000424804 RAPGEF4Q8WZA2 1011 aa18.03■□□□□ 0.48
VRK3-203ENST00000424804 ITGB4P16144 1822 aa18.02■□□□□ 0.48
VRK3-203ENST00000424804 SMG6Q86US8 1419 aaKnown RBP18.02■□□□□ 0.48
VRK3-203ENST00000424804 WASHC2AQ641Q2 1341 aa18.01■□□□□ 0.47
VRK3-203ENST00000424804 TAF1LQ8IZX4 1826 aa18.01■□□□□ 0.47
VRK3-203ENST00000424804 POLKQ9UBT6 870 aa18.01■□□□□ 0.47
VRK3-203ENST00000424804 CCNL1Q9UK58 526 aaPredicted RBP18.01■□□□□ 0.47
VRK3-203ENST00000424804 DCAF8L1A6NGE4 600 aa18■□□□□ 0.47
VRK3-203ENST00000424804 COL23A1Q86Y22 540 aaPredicted RBP18■□□□□ 0.47
VRK3-203ENST00000424804 EYA1Q99502 592 aa18■□□□□ 0.47
VRK3-203ENST00000424804 TFCP2L1Q9NZI6 479 aa18■□□□□ 0.47
VRK3-203ENST00000424804 PCDH11XQ9BZA7 1347 aa17.99■□□□□ 0.47
VRK3-203ENST00000424804 PCDH11YQ9BZA8 1340 aa17.99■□□□□ 0.47
VRK3-203ENST00000424804 NKX1-1Q15270 411 aaPredicted RBP17.99■□□□□ 0.47
VRK3-203ENST00000424804 CHD4Q14839 1912 aa17.99■□□□□ 0.47
VRK3-203ENST00000424804 GOLGB1Q14789 3259 aaKnown RBP17.99■□□□□ 0.47
VRK3-203ENST00000424804 C5P01031 1676 aa17.98■□□□□ 0.47
VRK3-203ENST00000424804 AMIGO3Q86WK7 504 aa17.97■□□□□ 0.47
VRK3-203ENST00000424804 PIGBQ92521 554 aa17.96■□□□□ 0.47
VRK3-203ENST00000424804 PALLDQ8WX93 1383 aa17.95■□□□□ 0.46
VRK3-203ENST00000424804 HSPA5P11021 654 aaKnown RBP17.95■□□□□ 0.46
VRK3-203ENST00000424804 MPRIPQ6WCQ1 1025 aa17.95■□□□□ 0.46
VRK3-203ENST00000424804 ZNF784Q8NCA9 323 aaPredicted RBP17.95■□□□□ 0.46
VRK3-203ENST00000424804 PPM1GO15355 546 aaPredicted RBP17.94■□□□□ 0.46
VRK3-203ENST00000424804 NLGN2Q8NFZ4 835 aa17.94■□□□□ 0.46
VRK3-203ENST00000424804 EIF4A2Q14240 407 aaKnown RBP17.93■□□□□ 0.46
VRK3-203ENST00000424804 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.93■□□□□ 0.461e-7■■□□□ 12.1
VRK3-203ENST00000424804 POLD1P28340 1107 aa17.92■□□□□ 0.46
VRK3-203ENST00000424804 POLR3GLQ9BT43 218 aa17.92■□□□□ 0.46
VRK3-203ENST00000424804 UBR3Q6ZT12 1888 aa17.92■□□□□ 0.46
VRK3-203ENST00000424804 C4BP0C0L5 1744 aa17.92■□□□□ 0.46
VRK3-203ENST00000424804 SMIM5Q71RC9 77 aa17.91■□□□□ 0.46
VRK3-203ENST00000424804 PANK3Q9H999 370 aa17.91■□□□□ 0.46
VRK3-203ENST00000424804 PHKG2P15735 406 aa17.9■□□□□ 0.46
VRK3-203ENST00000424804 EIF4G2P78344 907 aaKnown RBP eCLIP17.9■□□□□ 0.46
VRK3-203ENST00000424804 SPG7Q9UQ90 795 aa17.9■□□□□ 0.46
VRK3-203ENST00000424804 TNNT2P45379 298 aaPredicted RBP17.89■□□□□ 0.45
VRK3-203ENST00000424804 MSL1Q68DK7 614 aa17.89■□□□□ 0.45
VRK3-203ENST00000424804 SMARCC1Q92922 1105 aaPredicted RBP17.89■□□□□ 0.45
VRK3-203ENST00000424804 ASAP1Q9ULH1 1129 aa17.88■□□□□ 0.45
VRK3-203ENST00000424804 IGSF1Q8N6C5 1336 aa17.88■□□□□ 0.45
VRK3-203ENST00000424804 MSH5O43196 834 aa17.87■□□□□ 0.45
VRK3-203ENST00000424804 YBX3P16989 372 aaKnown RBP eCLIP17.87■□□□□ 0.454e-7■■□□□ 11.9
VRK3-203ENST00000424804 ITPK1Q13572 414 aa17.87■□□□□ 0.45
VRK3-203ENST00000424804 GPR162Q16538 588 aa17.87■□□□□ 0.45
VRK3-203ENST00000424804 IFNL2Q8IZJ0 200 aa17.87■□□□□ 0.45
VRK3-203ENST00000424804 LINC00116Q8NCU8 138 aa17.87■□□□□ 0.45
VRK3-203ENST00000424804 LOC102724428A0A0B4J2F2 783 aa17.86■□□□□ 0.45
VRK3-203ENST00000424804 SIK1P57059 783 aa17.86■□□□□ 0.45
VRK3-203ENST00000424804 KLHL34Q8N239 644 aa17.86■□□□□ 0.45
VRK3-203ENST00000424804 ATG3Q9NT62 314 aa17.86■□□□□ 0.45
VRK3-203ENST00000424804 FLAD1Q8NFF5 587 aa17.85■□□□□ 0.45
VRK3-203ENST00000424804 SLC4A9Q96Q91 983 aa17.85■□□□□ 0.45
VRK3-203ENST00000424804 PLEKHG2Q9H7P9 1386 aa17.85■□□□□ 0.45
VRK3-203ENST00000424804 TMOD3Q9NYL9 352 aa17.83■□□□□ 0.44
VRK3-203ENST00000424804 KDRP35968 1356 aa17.82■□□□□ 0.44
VRK3-203ENST00000424804 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.82■□□□□ 0.44
VRK3-203ENST00000424804 CD2APQ9Y5K6 639 aa17.82■□□□□ 0.44
VRK3-203ENST00000424804 HMGB2P26583 209 aaKnown RBP17.81■□□□□ 0.44
VRK3-203ENST00000424804 AK7Q96M32 723 aa17.81■□□□□ 0.44
VRK3-203ENST00000424804 KDM6AO15550 1401 aaPredicted RBP17.81■□□□□ 0.44
VRK3-203ENST00000424804 ZNF831Q5JPB2 1677 aa17.8■□□□□ 0.44
VRK3-203ENST00000424804 SSFA2P28290 1259 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms