RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 NSD2O96028 1365 aa11.41□□□□□ -0.58
VIM-202ENST00000421459 MEGF6O75095 1541 aa11.41□□□□□ -0.58
VIM-202ENST00000421459 FYB1O15117 783 aa11.41□□□□□ -0.58
VIM-202ENST00000421459 GPR162Q16538 588 aa11.41□□□□□ -0.58
VIM-202ENST00000421459 PELP1Q8IZL8 1130 aaKnown RBP11.41□□□□□ -0.58
VIM-202ENST00000421459 NLGN2Q8NFZ4 835 aa11.41□□□□□ -0.58
VIM-202ENST00000421459 SLC27A3Q5K4L6 730 aa11.4□□□□□ -0.58
VIM-202ENST00000421459 ANKRD36BQ8N2N9 1353 aa11.4□□□□□ -0.59
VIM-202ENST00000421459 MSH5O43196 834 aa11.39□□□□□ -0.59
VIM-202ENST00000421459 HSP90AB2PQ58FF8 381 aa11.39□□□□□ -0.59
VIM-202ENST00000421459 MSL1Q68DK7 614 aa11.39□□□□□ -0.59
VIM-202ENST00000421459 CCNL1Q9UK58 526 aaPredicted RBP11.39□□□□□ -0.59
VIM-202ENST00000421459 SMIM5Q71RC9 77 aa11.38□□□□□ -0.59
VIM-202ENST00000421459 COL23A1Q86Y22 540 aaPredicted RBP11.38□□□□□ -0.59
VIM-202ENST00000421459 FAM208AQ9UK61 1670 aaKnown RBP11.38□□□□□ -0.59
VIM-202ENST00000421459 RGPD2P0DJD1 1756 aa11.37□□□□□ -0.59
VIM-202ENST00000421459 POLD1P28340 1107 aa11.37□□□□□ -0.59
VIM-202ENST00000421459 SLC16A10Q8TF71 515 aa11.37□□□□□ -0.59
VIM-202ENST00000421459 MAP3K5Q99683 1374 aa11.37□□□□□ -0.59
VIM-202ENST00000421459 CARD14Q9BXL6 1004 aa11.36□□□□□ -0.59
VIM-202ENST00000421459 DOT1LQ8TEK3 1739 aa11.35□□□□□ -0.59
VIM-202ENST00000421459 YBX3P16989 372 aaKnown RBP eCLIP11.35□□□□□ -0.594e-7■□□□□ 10
VIM-202ENST00000421459 TATP17735 454 aaPredicted RBP11.35□□□□□ -0.59
VIM-202ENST00000421459 TMF1P82094 1093 aa11.35□□□□□ -0.59
VIM-202ENST00000421459 AMIGO3Q86WK7 504 aa11.35□□□□□ -0.59
VIM-202ENST00000421459 RAPGEF4Q8WZA2 1011 aa11.35□□□□□ -0.59
VIM-202ENST00000421459 EMILIN1Q9Y6C2 1016 aa11.35□□□□□ -0.59
VIM-202ENST00000421459 SHANK3Q9BYB0 1731 aa11.35□□□□□ -0.59
VIM-202ENST00000421459 USP47Q96K76 1375 aa11.34□□□□□ -0.59
VIM-202ENST00000421459 SENP3-EIF4A1A0A087X0R7 540 aa11.34□□□□□ -0.59
VIM-202ENST00000421459 CYP27B1O15528 508 aa11.34□□□□□ -0.59
VIM-202ENST00000421459 C1QTNF8P60827 252 aa11.34□□□□□ -0.59
VIM-202ENST00000421459 MPRIPQ6WCQ1 1025 aa11.34□□□□□ -0.59
VIM-202ENST00000421459 RTL1A6NKG5 1358 aa11.33□□□□□ -0.6
VIM-202ENST00000421459 PPM1GO15355 546 aaPredicted RBP11.33□□□□□ -0.6
VIM-202ENST00000421459 KAT6BQ8WYB5 2073 aa11.32□□□□□ -0.6
VIM-202ENST00000421459 INSRP06213 1382 aa11.32□□□□□ -0.6
VIM-202ENST00000421459 WWC3Q9ULE0 1092 aa11.32□□□□□ -0.6
VIM-202ENST00000421459 TUBGCP6Q96RT7 1819 aa11.32□□□□□ -0.6
VIM-202ENST00000421459 PALLDQ8WX93 1383 aa11.31□□□□□ -0.6
VIM-202ENST00000421459 SLC24A1O60721 1099 aa11.31□□□□□ -0.6
VIM-202ENST00000421459 PIGBQ92521 554 aa11.31□□□□□ -0.6
VIM-202ENST00000421459 SMG6Q86US8 1419 aaKnown RBP11.31□□□□□ -0.6
VIM-202ENST00000421459 CGNL1Q0VF96 1302 aa11.31□□□□□ -0.6
VIM-202ENST00000421459 PCDH11XQ9BZA7 1347 aa11.31□□□□□ -0.6
VIM-202ENST00000421459 PCDH11YQ9BZA8 1340 aa11.31□□□□□ -0.6
VIM-202ENST00000421459 FLT4P35916 1363 aa11.3□□□□□ -0.6
VIM-202ENST00000421459 LY75O60449 1722 aa11.3□□□□□ -0.6
VIM-202ENST00000421459 PHF14O94880 888 aa11.3□□□□□ -0.6
VIM-202ENST00000421459 NSD3Q9BZ95 1437 aa11.29□□□□□ -0.6
VIM-202ENST00000421459 QSER1Q2KHR3 1735 aa11.29□□□□□ -0.6
VIM-202ENST00000421459 TNNT2P45379 298 aaPredicted RBP11.28□□□□□ -0.6
VIM-202ENST00000421459 LINC00116Q8NCU8 138 aa11.28□□□□□ -0.6
VIM-202ENST00000421459 EYA1Q99502 592 aa11.28□□□□□ -0.6
VIM-202ENST00000421459 POLR3GLQ9BT43 218 aa11.28□□□□□ -0.6
VIM-202ENST00000421459 COL24A1Q17RW2 1714 aa11.28□□□□□ -0.6
VIM-202ENST00000421459 CEP350Q5VT06 3117 aa11.27□□□□□ -0.6
VIM-202ENST00000421459 GIGYF1O75420 1035 aaPredicted RBP11.27□□□□□ -0.61
VIM-202ENST00000421459 AK7Q96M32 723 aa11.27□□□□□ -0.61
VIM-202ENST00000421459 ASAP1Q9ULH1 1129 aa11.27□□□□□ -0.61
VIM-202ENST00000421459 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.26□□□□□ -0.61
VIM-202ENST00000421459 GRIN3BO60391 1043 aa11.26□□□□□ -0.61
VIM-202ENST00000421459 ITPK1Q13572 414 aa11.26□□□□□ -0.61
VIM-202ENST00000421459 NKX1-1Q15270 411 aaPredicted RBP11.26□□□□□ -0.61
VIM-202ENST00000421459 CDCA8Q53HL2 280 aa11.26□□□□□ -0.61
VIM-202ENST00000421459 POLKQ9UBT6 870 aa11.26□□□□□ -0.61
VIM-202ENST00000421459 TOGARAM1Q9Y4F4 1720 aa11.26□□□□□ -0.61
VIM-202ENST00000421459 LOC102724428A0A0B4J2F2 783 aa11.25□□□□□ -0.61
VIM-202ENST00000421459 SIK1P57059 783 aa11.25□□□□□ -0.61
VIM-202ENST00000421459 TRIM26Q12899 539 aaPredicted RBP11.25□□□□□ -0.61
VIM-202ENST00000421459 ZNF526Q8TF50 670 aaPredicted RBP11.25□□□□□ -0.61
VIM-202ENST00000421459 SMARCC1Q92922 1105 aaPredicted RBP11.25□□□□□ -0.61
VIM-202ENST00000421459 SPG7Q9UQ90 795 aa11.25□□□□□ -0.61
VIM-202ENST00000421459 CD2APQ9Y5K6 639 aa11.25□□□□□ -0.61
VIM-202ENST00000421459 WASHC2AQ641Q2 1341 aa11.25□□□□□ -0.61
VIM-202ENST00000421459 KIF24Q5T7B8 1368 aa11.25□□□□□ -0.61
VIM-202ENST00000421459 C5P01031 1676 aa11.24□□□□□ -0.61
VIM-202ENST00000421459 PHKG2P15735 406 aa11.24□□□□□ -0.61
VIM-202ENST00000421459 EIF4A2Q14240 407 aaKnown RBP11.24□□□□□ -0.61
VIM-202ENST00000421459 FLAD1Q8NFF5 587 aa11.24□□□□□ -0.61
VIM-202ENST00000421459 TMOD3Q9NYL9 352 aa11.24□□□□□ -0.61
VIM-202ENST00000421459 CHD4Q14839 1912 aa11.24□□□□□ -0.61
VIM-202ENST00000421459 KIF20BQ96Q89 1820 aa11.23□□□□□ -0.61
VIM-202ENST00000421459 ATP6V1AP38606 617 aa11.23□□□□□ -0.61
VIM-202ENST00000421459 SLC4A9Q96Q91 983 aa11.23□□□□□ -0.61
VIM-202ENST00000421459 ATG3Q9NT62 314 aa11.23□□□□□ -0.61
VIM-202ENST00000421459 IGSF1Q8N6C5 1336 aa11.23□□□□□ -0.61
VIM-202ENST00000421459 NCAPD2Q15021 1401 aa11.23□□□□□ -0.61
VIM-202ENST00000421459 ATP10DQ9P241 1426 aa11.23□□□□□ -0.61
VIM-202ENST00000421459 C4BP0C0L5 1744 aa11.23□□□□□ -0.61
VIM-202ENST00000421459 GNPATO15228 680 aa11.22□□□□□ -0.61
VIM-202ENST00000421459 IFNL2Q8IZJ0 200 aa11.22□□□□□ -0.61
VIM-202ENST00000421459 SSFA2P28290 1259 aa11.21□□□□□ -0.61
VIM-202ENST00000421459 PCGF6Q9BYE7 350 aa11.21□□□□□ -0.61
VIM-202ENST00000421459 RBM42Q9BTD8 480 aaKnown RBP11.2□□□□□ -0.62
VIM-202ENST00000421459 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.2□□□□□ -0.62
VIM-202ENST00000421459 TAF1LQ8IZX4 1826 aa11.2□□□□□ -0.62
VIM-202ENST00000421459 PKD1L3Q7Z443 1732 aa11.2□□□□□ -0.62
VIM-202ENST00000421459 ITGB4P16144 1822 aa11.19□□□□□ -0.62
VIM-202ENST00000421459 MMP10P09238 476 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms