RNA–Protein interactions for RNA: ENST00000421263.1

VARS2-202, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2

Gene VARS2, Length 460 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-202ENST00000421263 CGNL1Q0VF96 1302 aa26.29■■□□□ 1.8
VARS2-202ENST00000421263 SHANK3Q9BYB0 1731 aa26.28■■□□□ 1.8
VARS2-202ENST00000421263 PRIM1P49642 420 aaKnown RBP26.28■■□□□ 1.8
VARS2-202ENST00000421263 FLT4P35916 1363 aa26.28■■□□□ 1.8
VARS2-202ENST00000421263 ATF5Q9Y2D1 282 aaPredicted RBP26.27■■□□□ 1.8
VARS2-202ENST00000421263 NSD3Q9BZ95 1437 aa26.27■■□□□ 1.8
VARS2-202ENST00000421263 SMG6Q86US8 1419 aaKnown RBP26.26■■□□□ 1.79
VARS2-202ENST00000421263 SLC27A3Q5K4L6 730 aa26.26■■□□□ 1.79
VARS2-202ENST00000421263 USHBP1Q8N6Y0 703 aa26.26■■□□□ 1.79
VARS2-202ENST00000421263 SGIP1Q9BQI5 828 aa26.25■■□□□ 1.79
VARS2-202ENST00000421263 MTFR1LQ9H019 292 aa26.25■■□□□ 1.79
VARS2-202ENST00000421263 NSD2O96028 1365 aa26.24■■□□□ 1.79
VARS2-202ENST00000421263 ZNF827Q17R98 1081 aa26.24■■□□□ 1.79
VARS2-202ENST00000421263 RAPGEF4Q8WZA2 1011 aa26.24■■□□□ 1.79
VARS2-202ENST00000421263 AKT1S1Q96B36 256 aa26.24■■□□□ 1.79
VARS2-202ENST00000421263 EMILIN1Q9Y6C2 1016 aa26.23■■□□□ 1.79
VARS2-202ENST00000421263 SYTL4Q96C24 671 aaPredicted RBP26.22■■□□□ 1.79
VARS2-202ENST00000421263 TATP17735 454 aaPredicted RBP26.21■■□□□ 1.79
VARS2-202ENST00000421263 DOT1LQ8TEK3 1739 aa26.21■■□□□ 1.79
VARS2-202ENST00000421263 WASHC2AQ641Q2 1341 aa26.18■■□□□ 1.78
VARS2-202ENST00000421263 LY75O60449 1722 aa26.18■■□□□ 1.78
VARS2-202ENST00000421263 NCAPD2Q15021 1401 aa26.17■■□□□ 1.78
VARS2-202ENST00000421263 EIF4G2P78344 907 aaKnown RBP eCLIP26.17■■□□□ 1.78
VARS2-202ENST00000421263 PCDH11XQ9BZA7 1347 aa26.15■■□□□ 1.78
VARS2-202ENST00000421263 PCDH11YQ9BZA8 1340 aa26.15■■□□□ 1.78
VARS2-202ENST00000421263 ANKRD26Q9UPS8 1709 aa26.15■■□□□ 1.78
VARS2-202ENST00000421263 DCAF8L1A6NGE4 600 aa26.15■■□□□ 1.78
VARS2-202ENST00000421263 KCNQ4P56696 695 aa26.15■■□□□ 1.78
VARS2-202ENST00000421263 SLC16A10Q8TF71 515 aa26.15■■□□□ 1.78
VARS2-202ENST00000421263 SYT17Q9BSW7 474 aa26.15■■□□□ 1.78
VARS2-202ENST00000421263 QSER1Q2KHR3 1735 aa26.14■■□□□ 1.78
VARS2-202ENST00000421263 HSPA5P11021 654 aaKnown RBP26.14■■□□□ 1.78
VARS2-202ENST00000421263 FHDC1Q9C0D6 1143 aaPredicted RBP26.14■■□□□ 1.78
VARS2-202ENST00000421263 POLKQ9UBT6 870 aa26.14■■□□□ 1.78
VARS2-202ENST00000421263 MAP2P11137 1827 aaKnown RBP26.14■■□□□ 1.77
VARS2-202ENST00000421263 CYP27B1O15528 508 aa26.13■■□□□ 1.77
VARS2-202ENST00000421263 PNPLA7Q6ZV29 1317 aa26.13■■□□□ 1.77
VARS2-202ENST00000421263 PPM1GO15355 546 aaPredicted RBP26.12■■□□□ 1.77
VARS2-202ENST00000421263 ARXQ96QS3 562 aa26.12■■□□□ 1.77
VARS2-202ENST00000421263 CCER1Q8TC90 406 aaPredicted RBP26.11■■□□□ 1.77
VARS2-202ENST00000421263 EYA1Q99502 592 aa26.11■■□□□ 1.77
VARS2-202ENST00000421263 CCNL1Q9UK58 526 aaPredicted RBP26.11■■□□□ 1.77
VARS2-202ENST00000421263 YY1P25490 414 aa26.1■■□□□ 1.77
VARS2-202ENST00000421263 POLR3GLQ9BT43 218 aa26.1■■□□□ 1.77
VARS2-202ENST00000421263 TFCP2L1Q9NZI6 479 aa26.1■■□□□ 1.77
VARS2-202ENST00000421263 NKX1-1Q15270 411 aaPredicted RBP26.09■■□□□ 1.77
VARS2-202ENST00000421263 COL24A1Q17RW2 1714 aa26.08■■□□□ 1.77
VARS2-202ENST00000421263 PANK3Q9H999 370 aa26.08■■□□□ 1.77
VARS2-202ENST00000421263 PKD1L3Q7Z443 1732 aa26.08■■□□□ 1.76
VARS2-202ENST00000421263 MAP3K5Q99683 1374 aa26.07■■□□□ 1.76
VARS2-202ENST00000421263 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.07■■□□□ 1.762e-8■■■■□ 21
VARS2-202ENST00000421263 TUBGCP6Q96RT7 1819 aa26.06■■□□□ 1.76
VARS2-202ENST00000421263 MPRIPQ6WCQ1 1025 aa26.05■■□□□ 1.76
VARS2-202ENST00000421263 SPG7Q9UQ90 795 aa26.05■■□□□ 1.76
VARS2-202ENST00000421263 HMGB2P26583 209 aaKnown RBP26.03■■□□□ 1.76
VARS2-202ENST00000421263 EIF4A2Q14240 407 aaKnown RBP26.03■■□□□ 1.76
VARS2-202ENST00000421263 TNNT2P45379 298 aaPredicted RBP26.02■■□□□ 1.76
VARS2-202ENST00000421263 TOGARAM1Q9Y4F4 1720 aa26.02■■□□□ 1.76
VARS2-202ENST00000421263 ITGB4P16144 1822 aa26.02■■□□□ 1.76
VARS2-202ENST00000421263 COL23A1Q86Y22 540 aaPredicted RBP26.01■■□□□ 1.75
VARS2-202ENST00000421263 PALLDQ8WX93 1383 aa26.01■■□□□ 1.75
VARS2-202ENST00000421263 POLD1P28340 1107 aa26■■□□□ 1.75
VARS2-202ENST00000421263 PIGBQ92521 554 aa26■■□□□ 1.75
VARS2-202ENST00000421263 SMARCC1Q92922 1105 aaPredicted RBP26■■□□□ 1.75
VARS2-202ENST00000421263 UTRNP46939 3433 aa25.99■■□□□ 1.75
VARS2-202ENST00000421263 PLEKHG2Q9H7P9 1386 aa25.98■■□□□ 1.75
VARS2-202ENST00000421263 PHKG2P15735 406 aa25.97■■□□□ 1.75
VARS2-202ENST00000421263 IFNL2Q8IZJ0 200 aa25.97■■□□□ 1.75
VARS2-202ENST00000421263 TAF1LQ8IZX4 1826 aa25.97■■□□□ 1.75
VARS2-202ENST00000421263 C5P01031 1676 aa25.96■■□□□ 1.75
VARS2-202ENST00000421263 IGSF1Q8N6C5 1336 aa25.96■■□□□ 1.75
VARS2-202ENST00000421263 FLAD1Q8NFF5 587 aa25.94■■□□□ 1.74
VARS2-202ENST00000421263 MSH5O43196 834 aa25.92■■□□□ 1.74
VARS2-202ENST00000421263 MORC1Q86VD1 984 aa25.91■■□□□ 1.74
VARS2-202ENST00000421263 TMOD3Q9NYL9 352 aa25.91■■□□□ 1.74
VARS2-202ENST00000421263 C4BP0C0L5 1744 aa25.89■■□□□ 1.74
VARS2-202ENST00000421263 LOC102724428A0A0B4J2F2 783 aa25.89■■□□□ 1.74
VARS2-202ENST00000421263 SIK1P57059 783 aa25.89■■□□□ 1.74
VARS2-202ENST00000421263 ASAP1Q9ULH1 1129 aa25.89■■□□□ 1.74
VARS2-202ENST00000421263 KNSTRNQ9Y448 316 aa25.89■■□□□ 1.74
VARS2-202ENST00000421263 AMIGO3Q86WK7 504 aa25.88■■□□□ 1.73
VARS2-202ENST00000421263 AMER1Q5JTC6 1135 aaPredicted RBP25.87■■□□□ 1.73
VARS2-202ENST00000421263 ERVV-2B6SEH9 535 aa25.86■■□□□ 1.73
VARS2-202ENST00000421263 PLEKHO1Q53GL0 409 aaPredicted RBP25.86■■□□□ 1.73
VARS2-202ENST00000421263 KLHL34Q8N239 644 aa25.86■■□□□ 1.73
VARS2-202ENST00000421263 NLGN2Q8NFZ4 835 aa25.86■■□□□ 1.73
VARS2-202ENST00000421263 AK7Q96M32 723 aa25.86■■□□□ 1.73
VARS2-202ENST00000421263 ATG3Q9NT62 314 aa25.86■■□□□ 1.73
VARS2-202ENST00000421263 CHD4Q14839 1912 aa25.86■■□□□ 1.73
VARS2-202ENST00000421263 KIF7Q2M1P5 1343 aa25.86■■□□□ 1.73
VARS2-202ENST00000421263 GPR162Q16538 588 aa25.85■■□□□ 1.73
VARS2-202ENST00000421263 AMOTQ4VCS5 1084 aa25.85■■□□□ 1.73
VARS2-202ENST00000421263 LINC00116Q8NCU8 138 aa25.85■■□□□ 1.73
VARS2-202ENST00000421263 MSL1Q68DK7 614 aa25.84■■□□□ 1.73
VARS2-202ENST00000421263 DCAF5Q96JK2 942 aa25.84■■□□□ 1.73
VARS2-202ENST00000421263 UBR3Q6ZT12 1888 aa25.83■■□□□ 1.73
VARS2-202ENST00000421263 HSP90AB1P08238 724 aaKnown RBP25.83■■□□□ 1.73
VARS2-202ENST00000421263 ITPK1Q13572 414 aa25.83■■□□□ 1.73
VARS2-202ENST00000421263 ZNF784Q8NCA9 323 aaPredicted RBP25.83■■□□□ 1.73
VARS2-202ENST00000421263 PER1O15534 1290 aaPredicted RBP25.82■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms