RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 PDGFDQ9GZP0 370 aaPredicted RBP29.45■■■□□ 2.31
PTPN4-202ENST00000420482 RGPD2P0DJD1 1756 aa29.44■■■□□ 2.3
PTPN4-202ENST00000420482 SLC15A2Q16348 729 aa29.44■■■□□ 2.3
PTPN4-202ENST00000420482 HSP90AB2PQ58FF8 381 aa29.44■■■□□ 2.3
PTPN4-202ENST00000420482 HSPA5P11021 654 aaKnown RBP29.42■■■□□ 2.3
PTPN4-202ENST00000420482 TATP17735 454 aaPredicted RBP29.42■■■□□ 2.3
PTPN4-202ENST00000420482 SYTL4Q96C24 671 aaPredicted RBP29.42■■■□□ 2.3
PTPN4-202ENST00000420482 MEGF6O75095 1541 aa29.41■■■□□ 2.3
PTPN4-202ENST00000420482 YY1P25490 414 aa29.41■■■□□ 2.3
PTPN4-202ENST00000420482 PPM1GO15355 546 aaPredicted RBP29.4■■■□□ 2.3
PTPN4-202ENST00000420482 ZBTB7AO95365 584 aa29.4■■■□□ 2.3
PTPN4-202ENST00000420482 USHBP1Q8N6Y0 703 aa29.4■■■□□ 2.3
PTPN4-202ENST00000420482 PTGER2P43116 358 aa29.39■■■□□ 2.3
PTPN4-202ENST00000420482 QSER1Q2KHR3 1735 aa29.39■■■□□ 2.3
PTPN4-202ENST00000420482 DCAF8L1A6NGE4 600 aa29.38■■■□□ 2.29
PTPN4-202ENST00000420482 EMILIN1Q9Y6C2 1016 aa29.38■■■□□ 2.29
PTPN4-202ENST00000420482 SLC27A3Q5K4L6 730 aa29.37■■■□□ 2.29
PTPN4-202ENST00000420482 SHANK3Q9BYB0 1731 aa29.37■■■□□ 2.29
PTPN4-202ENST00000420482 PRIM1P49642 420 aaKnown RBP29.36■■■□□ 2.29
PTPN4-202ENST00000420482 PCDH11XQ9BZA7 1347 aa29.36■■■□□ 2.29
PTPN4-202ENST00000420482 PCDH11YQ9BZA8 1340 aa29.36■■■□□ 2.29
PTPN4-202ENST00000420482 DOT1LQ8TEK3 1739 aa29.35■■■□□ 2.29
PTPN4-202ENST00000420482 ATF5Q9Y2D1 282 aaPredicted RBP29.33■■■□□ 2.29
PTPN4-202ENST00000420482 WASHC2AQ641Q2 1341 aa29.33■■■□□ 2.29
PTPN4-202ENST00000420482 ANKRD26Q9UPS8 1709 aa29.32■■■□□ 2.28
PTPN4-202ENST00000420482 MTFR1LQ9H019 292 aa29.32■■■□□ 2.28
PTPN4-202ENST00000420482 TUBGCP6Q96RT7 1819 aa29.31■■■□□ 2.28
PTPN4-202ENST00000420482 HMGB2P26583 209 aaKnown RBP29.3■■■□□ 2.28
PTPN4-202ENST00000420482 SGIP1Q9BQI5 828 aa29.3■■■□□ 2.28
PTPN4-202ENST00000420482 PANK3Q9H999 370 aa29.3■■■□□ 2.28
PTPN4-202ENST00000420482 LY75O60449 1722 aa29.3■■■□□ 2.28
PTPN4-202ENST00000420482 MAP2P11137 1827 aaKnown RBP29.29■■■□□ 2.28
PTPN4-202ENST00000420482 COL24A1Q17RW2 1714 aa29.29■■■□□ 2.28
PTPN4-202ENST00000420482 CHD4Q14839 1912 aa29.29■■■□□ 2.28
PTPN4-202ENST00000420482 NSD2O96028 1365 aa29.28■■■□□ 2.28
PTPN4-202ENST00000420482 LRRC4BQ9NT99 713 aa29.28■■■□□ 2.28
PTPN4-202ENST00000420482 POLKQ9UBT6 870 aa29.28■■■□□ 2.28
PTPN4-202ENST00000420482 TNNT2P45379 298 aaPredicted RBP29.26■■■□□ 2.27
PTPN4-202ENST00000420482 SPG7Q9UQ90 795 aa29.26■■■□□ 2.27
PTPN4-202ENST00000420482 ZNF827Q17R98 1081 aa29.24■■■□□ 2.27
PTPN4-202ENST00000420482 FHDC1Q9C0D6 1143 aaPredicted RBP29.24■■■□□ 2.27
PTPN4-202ENST00000420482 NCAPD2Q15021 1401 aa29.23■■■□□ 2.27
PTPN4-202ENST00000420482 SYT17Q9BSW7 474 aa29.23■■■□□ 2.27
PTPN4-202ENST00000420482 EYA1Q99502 592 aa29.22■■■□□ 2.27
PTPN4-202ENST00000420482 TFCP2L1Q9NZI6 479 aa29.22■■■□□ 2.27
PTPN4-202ENST00000420482 CCNL1Q9UK58 526 aaPredicted RBP29.22■■■□□ 2.27
PTPN4-202ENST00000420482 SLC16A10Q8TF71 515 aa29.21■■■□□ 2.27
PTPN4-202ENST00000420482 AKT1S1Q96B36 256 aa29.21■■■□□ 2.27
PTPN4-202ENST00000420482 KNSTRNQ9Y448 316 aa29.21■■■□□ 2.27
PTPN4-202ENST00000420482 MAP3K5Q99683 1374 aa29.21■■■□□ 2.27
PTPN4-202ENST00000420482 PKD1L3Q7Z443 1732 aa29.2■■■□□ 2.27
PTPN4-202ENST00000420482 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.2■■■□□ 2.267e-9■■■□□ 17.8
PTPN4-202ENST00000420482 CYP27B1O15528 508 aa29.19■■■□□ 2.26
PTPN4-202ENST00000420482 MPRIPQ6WCQ1 1025 aa29.18■■■□□ 2.26
PTPN4-202ENST00000420482 MORC1Q86VD1 984 aa29.18■■■□□ 2.26
PTPN4-202ENST00000420482 ARXQ96QS3 562 aa29.18■■■□□ 2.26
PTPN4-202ENST00000420482 PLEKHG2Q9H7P9 1386 aa29.17■■■□□ 2.26
PTPN4-202ENST00000420482 EIF4A2Q14240 407 aaKnown RBP29.16■■■□□ 2.26
PTPN4-202ENST00000420482 SMARCC1Q92922 1105 aaPredicted RBP29.16■■■□□ 2.26
PTPN4-202ENST00000420482 KCNQ4P56696 695 aa29.15■■■□□ 2.26
PTPN4-202ENST00000420482 NKX1-1Q15270 411 aaPredicted RBP29.14■■■□□ 2.26
PTPN4-202ENST00000420482 POLD1P28340 1107 aa29.13■■■□□ 2.25
PTPN4-202ENST00000420482 IFNL2Q8IZJ0 200 aa29.13■■■□□ 2.25
PTPN4-202ENST00000420482 PALLDQ8WX93 1383 aa29.13■■■□□ 2.25
PTPN4-202ENST00000420482 PNPLA7Q6ZV29 1317 aa29.12■■■□□ 2.25
PTPN4-202ENST00000420482 UTRNP46939 3433 aa29.11■■■□□ 2.25
PTPN4-202ENST00000420482 C5P01031 1676 aa29.09■■■□□ 2.25
PTPN4-202ENST00000420482 TAF1LQ8IZX4 1826 aa29.09■■■□□ 2.25
PTPN4-202ENST00000420482 KIF7Q2M1P5 1343 aa29.09■■■□□ 2.25
PTPN4-202ENST00000420482 IGSF1Q8N6C5 1336 aa29.09■■■□□ 2.25
PTPN4-202ENST00000420482 TMOD3Q9NYL9 352 aa29.08■■■□□ 2.25
PTPN4-202ENST00000420482 MSH5O43196 834 aa29.07■■■□□ 2.24
PTPN4-202ENST00000420482 PHKG2P15735 406 aa29.07■■■□□ 2.24
PTPN4-202ENST00000420482 ITGB4P16144 1822 aa29.07■■■□□ 2.24
PTPN4-202ENST00000420482 TOGARAM1Q9Y4F4 1720 aa29.07■■■□□ 2.24
PTPN4-202ENST00000420482 FLAD1Q8NFF5 587 aa29.06■■■□□ 2.24
PTPN4-202ENST00000420482 HSP90AB1P08238 724 aaKnown RBP29.05■■■□□ 2.24
PTPN4-202ENST00000420482 PLEKHO1Q53GL0 409 aaPredicted RBP29.05■■■□□ 2.24
PTPN4-202ENST00000420482 PIGBQ92521 554 aa29.05■■■□□ 2.24
PTPN4-202ENST00000420482 ZNF784Q8NCA9 323 aaPredicted RBP29.04■■■□□ 2.24
PTPN4-202ENST00000420482 AMOTQ4VCS5 1084 aa29.03■■■□□ 2.24
PTPN4-202ENST00000420482 AMER1Q5JTC6 1135 aaPredicted RBP29■■■□□ 2.23
PTPN4-202ENST00000420482 AK7Q96M32 723 aa29■■■□□ 2.23
PTPN4-202ENST00000420482 COL23A1Q86Y22 540 aaPredicted RBP28.99■■■□□ 2.23
PTPN4-202ENST00000420482 DCAF5Q96JK2 942 aa28.99■■■□□ 2.23
PTPN4-202ENST00000420482 KLHL34Q8N239 644 aa28.98■■■□□ 2.23
PTPN4-202ENST00000420482 LOC102724428A0A0B4J2F2 783 aa28.97■■■□□ 2.23
PTPN4-202ENST00000420482 ERVV-2B6SEH9 535 aa28.97■■■□□ 2.23
PTPN4-202ENST00000420482 SIK1P57059 783 aa28.97■■■□□ 2.23
PTPN4-202ENST00000420482 C1orf141Q5JVX7 400 aa28.96■■■□□ 2.23
PTPN4-202ENST00000420482 ZNF530Q6P9A1 599 aaPredicted RBP28.96■■■□□ 2.23
PTPN4-202ENST00000420482 C4BP0C0L5 1744 aa28.96■■■□□ 2.23
PTPN4-202ENST00000420482 GPR162Q16538 588 aa28.94■■■□□ 2.22
PTPN4-202ENST00000420482 SULT6B1Q6IMI4 303 aa28.94■■■□□ 2.22
PTPN4-202ENST00000420482 ASAP1Q9ULH1 1129 aa28.93■■■□□ 2.22
PTPN4-202ENST00000420482 UBR3Q6ZT12 1888 aa28.92■■■□□ 2.22
PTPN4-202ENST00000420482 IL13P35225 146 aa28.92■■■□□ 2.22
PTPN4-202ENST00000420482 ATP6V1AP38606 617 aa28.92■■■□□ 2.22
PTPN4-202ENST00000420482 MTHFSP49914 203 aa28.91■■■□□ 2.22
PTPN4-202ENST00000420482 KDRP35968 1356 aa28.9■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms