RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 BRINP3Q76B58 766 aa7.85□□□□□ -1.15
HMGB3-202ENST00000419110 KRT28Q7Z3Y7 464 aa7.85□□□□□ -1.15
HMGB3-202ENST00000419110 BMP2KQ9NSY1 1161 aaPredicted RBP7.85□□□□□ -1.15
HMGB3-202ENST00000419110 TRPC6Q9Y210 931 aa7.85□□□□□ -1.15
HMGB3-202ENST00000419110 TIE1P35590 1138 aa7.84□□□□□ -1.15
HMGB3-202ENST00000419110 SGIP1Q9BQI5 828 aa7.84□□□□□ -1.15
HMGB3-202ENST00000419110 KDRP35968 1356 aa7.84□□□□□ -1.16
HMGB3-202ENST00000419110 SPATA31A3Q5VYP0 1347 aa7.83□□□□□ -1.16
HMGB3-202ENST00000419110 FAM212AQ96EL1 285 aa7.83□□□□□ -1.16
HMGB3-202ENST00000419110 SLAIN2Q9P270 581 aa7.83□□□□□ -1.16
HMGB3-202ENST00000419110 SIPA1L3O60292 1781 aaPredicted RBP7.83□□□□□ -1.16
HMGB3-202ENST00000419110 KDM3BQ7LBC6 1761 aa7.83□□□□□ -1.16
HMGB3-202ENST00000419110 SCN11AQ9UI33 1791 aa7.83□□□□□ -1.16
HMGB3-202ENST00000419110 NCAPD2Q15021 1401 aa7.83□□□□□ -1.16
HMGB3-202ENST00000419110 SHANK3Q9BYB0 1731 aa7.83□□□□□ -1.16
HMGB3-202ENST00000419110 CPDO75976 1380 aa7.83□□□□□ -1.16
HMGB3-202ENST00000419110 SOS2Q07890 1332 aaPredicted RBP7.82□□□□□ -1.16
HMGB3-202ENST00000419110 IGSF1Q8N6C5 1336 aa7.82□□□□□ -1.16
HMGB3-202ENST00000419110 ZBTB7CA1YPR0 619 aa7.82□□□□□ -1.16
HMGB3-202ENST00000419110 APAF1O14727 1248 aa7.82□□□□□ -1.16
HMGB3-202ENST00000419110 HOXC9P31274 260 aa7.82□□□□□ -1.16
HMGB3-202ENST00000419110 PRKAR2BP31323 418 aa7.82□□□□□ -1.16
HMGB3-202ENST00000419110 IL13P35225 146 aa7.82□□□□□ -1.16
HMGB3-202ENST00000419110 LMOD3Q0VAK6 560 aa7.82□□□□□ -1.16
HMGB3-202ENST00000419110 EIF4A2Q14240 407 aaKnown RBP7.82□□□□□ -1.16
HMGB3-202ENST00000419110 RSPH6AQ9H0K4 717 aa7.82□□□□□ -1.16
HMGB3-202ENST00000419110 PCDHB13Q9Y5F0 798 aa7.82□□□□□ -1.16
HMGB3-202ENST00000419110 PLEKHG2Q9H7P9 1386 aa7.82□□□□□ -1.16
HMGB3-202ENST00000419110 ZNF521Q96K83 1311 aa7.81□□□□□ -1.16
HMGB3-202ENST00000419110 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.81□□□□□ -1.16
HMGB3-202ENST00000419110 CACNA1FO60840 1977 aa7.81□□□□□ -1.16
HMGB3-202ENST00000419110 FCHSD2O94868 740 aa7.81□□□□□ -1.16
HMGB3-202ENST00000419110 HAP1P54257 671 aaPredicted RBP7.81□□□□□ -1.16
HMGB3-202ENST00000419110 TCP11L2Q8N4U5 519 aa7.81□□□□□ -1.16
HMGB3-202ENST00000419110 SALL2Q9Y467 1007 aaPredicted RBP7.81□□□□□ -1.16
HMGB3-202ENST00000419110 ADAMTS7Q9UKP4 1686 aa7.81□□□□□ -1.16
HMGB3-202ENST00000419110 N4BP2Q86UW6 1770 aaPredicted RBP7.81□□□□□ -1.16
HMGB3-202ENST00000419110 LAMB4A4D0S4 1761 aa7.8□□□□□ -1.16
HMGB3-202ENST00000419110 SENP3-EIF4A1A0A087X0R7 540 aa7.8□□□□□ -1.16
HMGB3-202ENST00000419110 TTLL13PA6NNM8 815 aa7.8□□□□□ -1.16
HMGB3-202ENST00000419110 E9PSI1 815 aa7.8□□□□□ -1.16
HMGB3-202ENST00000419110 HMOX1P09601 288 aa7.8□□□□□ -1.16
HMGB3-202ENST00000419110 FBLN1P23142 703 aa7.8□□□□□ -1.16
HMGB3-202ENST00000419110 GOLGA2Q08379 1002 aa7.8□□□□□ -1.16
HMGB3-202ENST00000419110 CCDC27Q2M243 656 aa7.8□□□□□ -1.16
HMGB3-202ENST00000419110 HSP90AB2PQ58FF8 381 aa7.8□□□□□ -1.16
HMGB3-202ENST00000419110 COL5A2P05997 1499 aaPredicted RBP7.8□□□□□ -1.16
HMGB3-202ENST00000419110 OVOS2A0A0G2JMS6 1433 aa7.79□□□□□ -1.16
HMGB3-202ENST00000419110 GCP02774 474 aa7.79□□□□□ -1.16
HMGB3-202ENST00000419110 POTEJP0CG39 1038 aa7.79□□□□□ -1.16
HMGB3-202ENST00000419110 CALD1Q05682 793 aaKnown RBP7.79□□□□□ -1.16
HMGB3-202ENST00000419110 NFE2L2Q16236 605 aa7.79□□□□□ -1.16
HMGB3-202ENST00000419110 DCAF8Q5TAQ9 597 aa7.79□□□□□ -1.16
HMGB3-202ENST00000419110 IP6K1Q92551 441 aa7.79□□□□□ -1.16
HMGB3-202ENST00000419110 DDX17Q92841 729 aaKnown RBP7.79□□□□□ -1.16
HMGB3-202ENST00000419110 RRP7AQ9Y3A4 280 aaKnown RBP7.79□□□□□ -1.16
HMGB3-202ENST00000419110 KIAA0232Q92628 1395 aa7.79□□□□□ -1.16
HMGB3-202ENST00000419110 ERBB3P21860 1342 aa7.78□□□□□ -1.16
HMGB3-202ENST00000419110 TMPOP42166 694 aaKnown RBP7.78□□□□□ -1.16
HMGB3-202ENST00000419110 NEUROD2Q15784 382 aa7.78□□□□□ -1.16
HMGB3-202ENST00000419110 SULT6B1Q6IMI4 303 aa7.78□□□□□ -1.16
HMGB3-202ENST00000419110 MAMSTRQ6ZN01 415 aa7.78□□□□□ -1.16
HMGB3-202ENST00000419110 ARHGEF25Q86VW2 580 aa7.78□□□□□ -1.16
HMGB3-202ENST00000419110 PLEKHF1Q96S99 279 aa7.78□□□□□ -1.16
HMGB3-202ENST00000419110 MYH16Q9H6N6 1097 aa7.78□□□□□ -1.16
HMGB3-202ENST00000419110 IL16Q14005 1332 aa7.78□□□□□ -1.16
HMGB3-202ENST00000419110 MAP3K5Q99683 1374 aa7.77□□□□□ -1.17
HMGB3-202ENST00000419110 TOM1O60784 492 aa7.77□□□□□ -1.17
HMGB3-202ENST00000419110 IFNL1Q8IU54 200 aa7.77□□□□□ -1.17
HMGB3-202ENST00000419110 AEBP1Q8IUX7 1158 aa7.77□□□□□ -1.17
HMGB3-202ENST00000419110 WDR63Q8IWG1 891 aa7.77□□□□□ -1.17
HMGB3-202ENST00000419110 WWC1Q8IX03 1113 aa7.77□□□□□ -1.17
HMGB3-202ENST00000419110 GAS2L2Q8NHY3 880 aa7.77□□□□□ -1.17
HMGB3-202ENST00000419110 LTV1Q96GA3 475 aaPredicted RBP7.77□□□□□ -1.17
HMGB3-202ENST00000419110 PRDM11Q9NQV5 511 aa7.77□□□□□ -1.17
HMGB3-202ENST00000419110 GTF3C3Q9Y5Q9 886 aa7.77□□□□□ -1.17
HMGB3-202ENST00000419110 PAPPAQ13219 1627 aa7.77□□□□□ -1.17
HMGB3-202ENST00000419110 DOT1LQ8TEK3 1739 aa7.76□□□□□ -1.17
HMGB3-202ENST00000419110 POTEFA5A3E0 1075 aa7.76□□□□□ -1.17
HMGB3-202ENST00000419110 ANKRD24Q8TF21 1146 aa7.76□□□□□ -1.17
HMGB3-202ENST00000419110 MEGF6O75095 1541 aa7.76□□□□□ -1.17
HMGB3-202ENST00000419110 MRC1P22897 1456 aa7.75□□□□□ -1.17
HMGB3-202ENST00000419110 TOGARAM1Q9Y4F4 1720 aa7.75□□□□□ -1.17
HMGB3-202ENST00000419110 CSB-PGBD3P0DP91 1061 aa7.75□□□□□ -1.17
HMGB3-202ENST00000419110 VASPP50552 380 aaPredicted RBP7.75□□□□□ -1.17
HMGB3-202ENST00000419110 RIPK4P57078 832 aa7.75□□□□□ -1.17
HMGB3-202ENST00000419110 ZC3H6P61129 1189 aaKnown RBP7.75□□□□□ -1.17
HMGB3-202ENST00000419110 SLFN5Q08AF3 891 aa7.75□□□□□ -1.17
HMGB3-202ENST00000419110 KLHL34Q8N239 644 aa7.75□□□□□ -1.17
HMGB3-202ENST00000419110 LRRC59Q96AG4 307 aaKnown RBP7.75□□□□□ -1.17
HMGB3-202ENST00000419110 EYA1Q99502 592 aa7.75□□□□□ -1.17
HMGB3-202ENST00000419110 RCAN3Q9UKA8 241 aa7.75□□□□□ -1.17
HMGB3-202ENST00000419110 TRIM35Q9UPQ4 493 aa7.75□□□□□ -1.17
HMGB3-202ENST00000419110 FANCIQ9NVI1 1328 aa7.75□□□□□ -1.17
HMGB3-202ENST00000419110 LRP6O75581 1613 aa7.74□□□□□ -1.17
HMGB3-202ENST00000419110 UBR2Q8IWV8 1755 aa7.74□□□□□ -1.17
HMGB3-202ENST00000419110 C5P01031 1676 aa7.74□□□□□ -1.17
HMGB3-202ENST00000419110 UBAP1LF5GYI3 381 aa7.74□□□□□ -1.17
HMGB3-202ENST00000419110 SEC24BO95487 1268 aa7.74□□□□□ -1.17
HMGB3-202ENST00000419110 DUSP27Q5VZP5 1158 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms