RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 PER1O15534 1290 aaPredicted RBP11.94□□□□□ -0.5
SNHG3-201ENST00000413987 USTQ9Y2C2 406 aa11.94□□□□□ -0.5
SNHG3-201ENST00000413987 TECPR2O15040 1411 aa11.94□□□□□ -0.5
SNHG3-201ENST00000413987 KNDC1Q76NI1 1749 aa11.94□□□□□ -0.5
SNHG3-201ENST00000413987 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.94□□□□□ -0.5
SNHG3-201ENST00000413987 HMGB1P1B2RPK0 211 aaPredicted RBP11.94□□□□□ -0.5
SNHG3-201ENST00000413987 MS4A1P11836 297 aa11.94□□□□□ -0.5
SNHG3-201ENST00000413987 ERCC3P19447 782 aa11.94□□□□□ -0.5
SNHG3-201ENST00000413987 KCNG1Q9UIX4 513 aa11.94□□□□□ -0.5
SNHG3-201ENST00000413987 CDCA8Q53HL2 280 aa11.93□□□□□ -0.5
SNHG3-201ENST00000413987 CARD14Q9BXL6 1004 aa11.93□□□□□ -0.5
SNHG3-201ENST00000413987 UBA5Q9GZZ9 404 aa11.92□□□□□ -0.5
SNHG3-201ENST00000413987 DIP2AQ14689 1571 aa11.92□□□□□ -0.5
SNHG3-201ENST00000413987 CARNS1A5YM72 827 aa11.92□□□□□ -0.5
SNHG3-201ENST00000413987 MAP4K4O95819 1239 aaPredicted RBP11.92□□□□□ -0.5
SNHG3-201ENST00000413987 ZNF330Q9Y3S2 320 aaPredicted RBP11.92□□□□□ -0.5
SNHG3-201ENST00000413987 XRN1Q8IZH2 1706 aaKnown RBP11.92□□□□□ -0.5
SNHG3-201ENST00000413987 FAM135BQ49AJ0 1406 aa11.91□□□□□ -0.5
SNHG3-201ENST00000413987 WASLO00401 505 aaPredicted RBP11.91□□□□□ -0.5
SNHG3-201ENST00000413987 GSE1Q14687 1217 aa11.91□□□□□ -0.5
SNHG3-201ENST00000413987 CDCA7Q9BWT1 371 aaPredicted RBP11.91□□□□□ -0.5
SNHG3-201ENST00000413987 ZC3H6P61129 1189 aaKnown RBP11.9□□□□□ -0.5
SNHG3-201ENST00000413987 CABP1Q9NZU7 370 aa11.9□□□□□ -0.5
SNHG3-201ENST00000413987 STK24Q9Y6E0 443 aa11.9□□□□□ -0.5
SNHG3-201ENST00000413987 EVI5LQ96CN4 794 aa11.9□□□□□ -0.51
SNHG3-201ENST00000413987 PRR36Q9H6K5 1346 aa11.89□□□□□ -0.51
SNHG3-201ENST00000413987 IPO4Q8TEX9 1081 aaKnown RBP11.89□□□□□ -0.51
SNHG3-201ENST00000413987 CHD2O14647 1828 aaKnown RBP11.89□□□□□ -0.51
SNHG3-201ENST00000413987 PDE4AP27815 886 aa11.88□□□□□ -0.51
SNHG3-201ENST00000413987 PTCH1Q13635 1447 aa11.88□□□□□ -0.51
SNHG3-201ENST00000413987 PCMTD1Q96MG8 357 aaPredicted RBP11.88□□□□□ -0.51
SNHG3-201ENST00000413987 KNSTRNQ9Y448 316 aa11.88□□□□□ -0.51
SNHG3-201ENST00000413987 STRCQ7RTU9 1775 aa11.88□□□□□ -0.51
SNHG3-201ENST00000413987 A0A1W2PP64 1363 aa11.88□□□□□ -0.51
SNHG3-201ENST00000413987 NSD3Q9BZ95 1437 aa11.88□□□□□ -0.51
SNHG3-201ENST00000413987 BACH2Q9BYV9 841 aa11.88□□□□□ -0.51
SNHG3-201ENST00000413987 CCDC181Q5TID7 509 aa11.87□□□□□ -0.51
SNHG3-201ENST00000413987 KLHL42Q9P2K6 505 aa11.87□□□□□ -0.51
SNHG3-201ENST00000413987 CD163L1Q9NR16 1453 aa11.87□□□□□ -0.51
SNHG3-201ENST00000413987 SENP3-EIF4A1A0A087X0R7 540 aa11.87□□□□□ -0.51
SNHG3-201ENST00000413987 LONRF3Q496Y0 759 aa11.87□□□□□ -0.51
SNHG3-201ENST00000413987 GLIPR1L2Q4G1C9 344 aa11.87□□□□□ -0.51
SNHG3-201ENST00000413987 SMC5Q8IY18 1101 aa11.87□□□□□ -0.51
SNHG3-201ENST00000413987 NUDT16Q96DE0 195 aaKnown RBP11.87□□□□□ -0.51
SNHG3-201ENST00000413987 ZNF16P17020 682 aaPredicted RBP11.86□□□□□ -0.51
SNHG3-201ENST00000413987 TNNT2P45379 298 aaPredicted RBP11.86□□□□□ -0.51
SNHG3-201ENST00000413987 SF3A1Q15459 793 aaKnown RBP11.86□□□□□ -0.51
SNHG3-201ENST00000413987 RBM46Q8TBY0 533 aaKnown RBP11.86□□□□□ -0.51
SNHG3-201ENST00000413987 PPIP5K1Q6PFW1 1433 aa11.86□□□□□ -0.51
SNHG3-201ENST00000413987 STRCP1A6NGW2 1772 aa11.86□□□□□ -0.51
SNHG3-201ENST00000413987 ATP7BP35670 1465 aa11.86□□□□□ -0.51
SNHG3-201ENST00000413987 PPFIA4O75335 1185 aa11.86□□□□□ -0.51
SNHG3-201ENST00000413987 METTL14Q9HCE5 456 aaKnown RBP11.86□□□□□ -0.51
SNHG3-201ENST00000413987 MAGEC2Q9UBF1 373 aaPredicted RBP11.86□□□□□ -0.51
SNHG3-201ENST00000413987 NALCNQ8IZF0 1738 aa11.86□□□□□ -0.51
SNHG3-201ENST00000413987 KTN1Q86UP2 1357 aaKnown RBP11.85□□□□□ -0.51
SNHG3-201ENST00000413987 COG6Q9Y2V7 657 aa11.85□□□□□ -0.51
SNHG3-201ENST00000413987 ATAD2Q6PL18 1390 aa11.85□□□□□ -0.51
SNHG3-201ENST00000413987 PIK3R4Q99570 1358 aa11.85□□□□□ -0.51
SNHG3-201ENST00000413987 DPH6Q7L8W6 267 aa11.84□□□□□ -0.51
SNHG3-201ENST00000413987 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.84□□□□□ -0.51
SNHG3-201ENST00000413987 PMFBP1Q8TBY8 1022 aa11.84□□□□□ -0.51
SNHG3-201ENST00000413987 RGPD8O14715 1765 aaPredicted RBP11.84□□□□□ -0.51
SNHG3-201ENST00000413987 CSB-PGBD3P0DP91 1061 aa11.84□□□□□ -0.51
SNHG3-201ENST00000413987 GPATCH3Q96I76 525 aa11.84□□□□□ -0.51
SNHG3-201ENST00000413987 ZNF335Q9H4Z2 1342 aaPredicted RBP11.84□□□□□ -0.51
SNHG3-201ENST00000413987 ANKRD36BQ8N2N9 1353 aa11.84□□□□□ -0.51
SNHG3-201ENST00000413987 USP32Q8NFA0 1604 aa11.83□□□□□ -0.52
SNHG3-201ENST00000413987 PARD3Q8TEW0 1356 aa11.83□□□□□ -0.52
SNHG3-201ENST00000413987 FOXD4Q12950 439 aaPredicted RBP11.83□□□□□ -0.52
SNHG3-201ENST00000413987 NAALADL2Q58DX5 795 aa11.83□□□□□ -0.52
SNHG3-201ENST00000413987 ADGRB2O60241 1585 aa11.83□□□□□ -0.52
SNHG3-201ENST00000413987 NKTRP30414 1462 aaKnown RBP11.83□□□□□ -0.52
SNHG3-201ENST00000413987 FAM43AQ8N2R8 423 aa11.83□□□□□ -0.52
SNHG3-201ENST00000413987 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.83□□□□□ -0.52
SNHG3-201ENST00000413987 PARP9Q8IXQ6 854 aa11.82□□□□□ -0.52
SNHG3-201ENST00000413987 VTI1AQ96AJ9 217 aa11.82□□□□□ -0.52
SNHG3-201ENST00000413987 PBXIP1Q96AQ6 731 aa11.82□□□□□ -0.52
SNHG3-201ENST00000413987 GGNBP2Q9H3C7 697 aa11.82□□□□□ -0.52
SNHG3-201ENST00000413987 CCDC61Q9Y6R9 512 aa11.82□□□□□ -0.52
SNHG3-201ENST00000413987 CREB3O43889 395 aa11.82□□□□□ -0.52
SNHG3-201ENST00000413987 TBC1D12O60347 775 aa11.82□□□□□ -0.52
SNHG3-201ENST00000413987 MTA3Q9BTC8 594 aa11.82□□□□□ -0.52
SNHG3-201ENST00000413987 FBLN1P23142 703 aa11.81□□□□□ -0.52
SNHG3-201ENST00000413987 RRP1P56182 461 aaKnown RBP11.81□□□□□ -0.52
SNHG3-201ENST00000413987 FAM193AP78312 1265 aa11.81□□□□□ -0.52
SNHG3-201ENST00000413987 ZRANB1Q9UGI0 708 aa11.81□□□□□ -0.52
SNHG3-201ENST00000413987 NWD1Q149M9 1564 aa11.81□□□□□ -0.52
SNHG3-201ENST00000413987 FTSJ3Q8IY81 847 aaKnown RBP11.8□□□□□ -0.52
SNHG3-201ENST00000413987 TMEM94Q12767 1356 aa11.8□□□□□ -0.52
SNHG3-201ENST00000413987 MYBBP1AQ9BQG0 1328 aaKnown RBP11.8□□□□□ -0.52
SNHG3-201ENST00000413987 PARNO95453 639 aaKnown RBP11.8□□□□□ -0.52
SNHG3-201ENST00000413987 NFKBIBQ15653 356 aa11.8□□□□□ -0.52
SNHG3-201ENST00000413987 KRBA2Q6ZNG9 492 aa11.8□□□□□ -0.52
SNHG3-201ENST00000413987 CALR3Q96L12 384 aaKnown RBP11.8□□□□□ -0.52
SNHG3-201ENST00000413987 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.8□□□□□ -0.52
SNHG3-201ENST00000413987 ACEP12821 1306 aa11.79□□□□□ -0.52
SNHG3-201ENST00000413987 ZFYVE27Q5T4F4 411 aa11.79□□□□□ -0.52
SNHG3-201ENST00000413987 HDGFL2Q7Z4V5 671 aaPredicted RBP11.79□□□□□ -0.52
SNHG3-201ENST00000413987 RPS6KL1Q9Y6S9 549 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms