RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 RIC3Q7Z5B4 369 aa15.53■□□□□ 0.08
CCDC88A-204ENST00000413716 SPATA32Q96LK8 384 aa15.53■□□□□ 0.08
CCDC88A-204ENST00000413716 CEP131Q9UPN4 1083 aa15.53■□□□□ 0.08
CCDC88A-204ENST00000413716 GTF2F1P35269 517 aaKnown RBP eCLIP15.53■□□□□ 0.087e-11■■■■□ 23.4
CCDC88A-204ENST00000413716 A0A1W2PRG0 241 aa15.52■□□□□ 0.08
CCDC88A-204ENST00000413716 CYP46A1Q9Y6A2 500 aa15.52■□□□□ 0.08
CCDC88A-204ENST00000413716 PPP4R3AQ6IN85 833 aa15.52■□□□□ 0.08
CCDC88A-204ENST00000413716 FGFR1OPO95684 399 aaKnown RBP15.52■□□□□ 0.08
CCDC88A-204ENST00000413716 ANKRD30AQ9BXX3 1397 aa15.52■□□□□ 0.07
CCDC88A-204ENST00000413716 HLTFQ14527 1009 aaKnown RBP eCLIP15.52■□□□□ 0.071e-6■□□□□ 9
CCDC88A-204ENST00000413716 NUP62CLQ9H1M0 184 aa15.52■□□□□ 0.07
CCDC88A-204ENST00000413716 SSBP05455 408 aaKnown RBP eCLIP15.52■□□□□ 0.07
CCDC88A-204ENST00000413716 TPD52P55327 224 aaPredicted RBP15.52■□□□□ 0.07
CCDC88A-204ENST00000413716 PAFAH1B1P43034 410 aa15.51■□□□□ 0.07
CCDC88A-204ENST00000413716 CWC25Q9NXE8 425 aaPredicted RBP15.51■□□□□ 0.07
CCDC88A-204ENST00000413716 ESPNB1AK53 854 aa15.51■□□□□ 0.07
CCDC88A-204ENST00000413716 PSMC4P43686 418 aa15.51■□□□□ 0.07
CCDC88A-204ENST00000413716 NACAP1Q9BZK3 213 aa15.51■□□□□ 0.07
CCDC88A-204ENST00000413716 SUDS3Q9H7L9 328 aaPredicted RBP15.51■□□□□ 0.07
CCDC88A-204ENST00000413716 TSG101Q99816 390 aa15.51■□□□□ 0.07
CCDC88A-204ENST00000413716 MAATS1Q7Z4T9 603 aa15.51■□□□□ 0.07
CCDC88A-204ENST00000413716 EVC2Q86UK5 1308 aa15.51■□□□□ 0.07
CCDC88A-204ENST00000413716 MAP7D1Q3KQU3 841 aa15.51■□□□□ 0.07
CCDC88A-204ENST00000413716 CEP120Q8N960 986 aa15.51■□□□□ 0.07
CCDC88A-204ENST00000413716 MYO15BQ96JP2 1530 aa15.51■□□□□ 0.07
CCDC88A-204ENST00000413716 PDIA4P13667 645 aaKnown RBP15.5■□□□□ 0.07
CCDC88A-204ENST00000413716 CEP135Q66GS9 1140 aa15.5■□□□□ 0.07
CCDC88A-204ENST00000413716 USO1O60763 962 aaKnown RBP15.5■□□□□ 0.07
CCDC88A-204ENST00000413716 SLU7O95391 586 aaKnown RBP15.5■□□□□ 0.07
CCDC88A-204ENST00000413716 ZNF76P36508 570 aa15.5■□□□□ 0.07
CCDC88A-204ENST00000413716 CACNA2D4Q7Z3S7 1137 aa15.5■□□□□ 0.07
CCDC88A-204ENST00000413716 LMAN1P49257 510 aa15.5■□□□□ 0.07
CCDC88A-204ENST00000413716 CCDC158Q5M9N0 1113 aa15.5■□□□□ 0.07
CCDC88A-204ENST00000413716 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.5■□□□□ 0.07
CCDC88A-204ENST00000413716 CCDC174Q6PII3 467 aa15.49■□□□□ 0.07
CCDC88A-204ENST00000413716 SMC6Q96SB8 1091 aa15.49■□□□□ 0.07
CCDC88A-204ENST00000413716 TNIP1Q15025 636 aa15.49■□□□□ 0.07
CCDC88A-204ENST00000413716 TTC39AQ5SRH9 613 aa15.49■□□□□ 0.07
CCDC88A-204ENST00000413716 IQCGQ9H095 443 aaKnown RBP15.49■□□□□ 0.07
CCDC88A-204ENST00000413716 TTC36A6NLP5 189 aa15.49■□□□□ 0.07
CCDC88A-204ENST00000413716 TRERF1Q96PN7 1200 aa15.49■□□□□ 0.07
CCDC88A-204ENST00000413716 FMN1Q68DA7 1419 aa15.49■□□□□ 0.07
CCDC88A-204ENST00000413716 HSF2BPO75031 334 aa15.49■□□□□ 0.07
CCDC88A-204ENST00000413716 KIF4AO95239 1232 aa15.49■□□□□ 0.07
CCDC88A-204ENST00000413716 WASF1Q92558 559 aa15.49■□□□□ 0.07
CCDC88A-204ENST00000413716 SEPT10Q9P0V9 454 aa15.49■□□□□ 0.07
CCDC88A-204ENST00000413716 KIF6Q6ZMV9 814 aa15.49■□□□□ 0.07
CCDC88A-204ENST00000413716 FERMT2Q96AC1 680 aa15.48■□□□□ 0.07
CCDC88A-204ENST00000413716 LRRC45Q96CN5 670 aa15.48■□□□□ 0.07
CCDC88A-204ENST00000413716 DRC1Q96MC2 740 aa15.48■□□□□ 0.07
CCDC88A-204ENST00000413716 KIF4BQ2VIQ3 1234 aa15.48■□□□□ 0.07
CCDC88A-204ENST00000413716 MAP3K11Q16584 847 aa15.48■□□□□ 0.07
CCDC88A-204ENST00000413716 KIF5AQ12840 1032 aa15.48■□□□□ 0.07
CCDC88A-204ENST00000413716 ZSCAN30Q86W11 494 aa15.48■□□□□ 0.07
CCDC88A-204ENST00000413716 NUP88Q99567 741 aaPredicted RBP15.48■□□□□ 0.07
CCDC88A-204ENST00000413716 HYPKQ9NX55 129 aa15.48■□□□□ 0.07
CCDC88A-204ENST00000413716 SPDYE4A6NLX3 237 aa15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 HMGB1P1B2RPK0 211 aaPredicted RBP15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 RIPK4P57078 832 aa15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 IL27Q8NEV9 243 aa15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 ZFP91Q96JP5 570 aaPredicted RBP15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 STMN4Q9H169 189 aaPredicted RBP15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 PIBF1Q8WXW3 757 aa15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 RSRC1Q96IZ7 334 aaKnown RBP15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 ODF2LQ9ULJ1 636 aa15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 PRDM2Q13029 1718 aa15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 CCDC155Q8N6L0 562 aa15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 TDO2P48775 406 aa15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 LARP1BQ659C4 914 aaKnown RBP15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 PAIP2Q9BPZ3 127 aaKnown RBP15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 DYNC1I1O14576 645 aa15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 TSPYL4Q9UJ04 414 aa15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 TACC1O75410 805 aa15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 ARL1P40616 181 aaPredicted RBP15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 MPNDQ8N594 471 aa15.47■□□□□ 0.07
CCDC88A-204ENST00000413716 BAZ1AQ9NRL2 1556 aaPredicted RBP15.46■□□□□ 0.07
CCDC88A-204ENST00000413716 PPP1R9BQ96SB3 815 aa15.46■□□□□ 0.07
CCDC88A-204ENST00000413716 PPP4R3BQ5MIZ7 849 aa15.46■□□□□ 0.06
CCDC88A-204ENST00000413716 STK3Q13188 491 aa15.46■□□□□ 0.06
CCDC88A-204ENST00000413716 MPHOSPH9Q99550 1183 aa15.46■□□□□ 0.06
CCDC88A-204ENST00000413716 SARNPP82979 210 aaKnown RBP15.45■□□□□ 0.06
CCDC88A-204ENST00000413716 ZHX1Q9UKY1 873 aaPredicted RBP15.45■□□□□ 0.06
CCDC88A-204ENST00000413716 WRNQ14191 1432 aaPredicted RBP eCLIP15.45■□□□□ 0.06
CCDC88A-204ENST00000413716 KIF5BP33176 963 aa15.45■□□□□ 0.06
CCDC88A-204ENST00000413716 GNAI1P63096 354 aa15.45■□□□□ 0.06
CCDC88A-204ENST00000413716 CKAP4Q07065 602 aaKnown RBP15.45■□□□□ 0.06
CCDC88A-204ENST00000413716 GBP7Q8N8V2 638 aaPredicted RBP15.45■□□□□ 0.06
CCDC88A-204ENST00000413716 TTC14Q96N46 770 aa15.45■□□□□ 0.06
CCDC88A-204ENST00000413716 PANK3Q9H999 370 aa15.45■□□□□ 0.06
CCDC88A-204ENST00000413716 RAB3GAP2Q9H2M9 1393 aa15.45■□□□□ 0.06
CCDC88A-204ENST00000413716 MAP3K9P80192 1104 aa15.45■□□□□ 0.06
CCDC88A-204ENST00000413716 GOLGA6L9A6NEM1 432 aa15.44■□□□□ 0.06
CCDC88A-204ENST00000413716 CCDC144AA2RUR9 1427 aa15.44■□□□□ 0.06
CCDC88A-204ENST00000413716 SMC1BQ8NDV3 1235 aa15.44■□□□□ 0.06
CCDC88A-204ENST00000413716 ACTN2P35609 894 aa15.44■□□□□ 0.06
CCDC88A-204ENST00000413716 NUP133Q8WUM0 1156 aa15.44■□□□□ 0.06
CCDC88A-204ENST00000413716 RRBP1Q9P2E9 1410 aaKnown RBP15.44■□□□□ 0.06
CCDC88A-204ENST00000413716 TOP1P11387 765 aaKnown RBP15.44■□□□□ 0.06
CCDC88A-204ENST00000413716 GMNNO75496 209 aa15.44■□□□□ 0.06
CCDC88A-204ENST00000413716 EHBP1Q8NDI1 1231 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms