RNA–Protein interactions for RNA: ENST00000413517.1

HERPUD2-203, Transcript of HERPUD family member 2, humanhuman

TSL 5

Gene HERPUD2, Length 808 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-203ENST00000413517 POLR3GLQ9BT43 218 aa11.87□□□□□ -0.51
HERPUD2-203ENST00000413517 CSB-PGBD3P0DP91 1061 aa11.86□□□□□ -0.51
HERPUD2-203ENST00000413517 RRS1Q15050 365 aaKnown RBP11.86□□□□□ -0.51
HERPUD2-203ENST00000413517 ANKRD24Q8TF21 1146 aa11.86□□□□□ -0.51
HERPUD2-203ENST00000413517 IP6K1Q92551 441 aa11.86□□□□□ -0.51
HERPUD2-203ENST00000413517 NUP188Q5SRE5 1749 aa11.86□□□□□ -0.51
HERPUD2-203ENST00000413517 CCDC7Q96M83 1385 aa11.85□□□□□ -0.51
HERPUD2-203ENST00000413517 HOXC9P31274 260 aa11.85□□□□□ -0.51
HERPUD2-203ENST00000413517 TNS2Q63HR2 1409 aa11.85□□□□□ -0.51
HERPUD2-203ENST00000413517 RTL1A6NKG5 1358 aa11.84□□□□□ -0.51
HERPUD2-203ENST00000413517 TRIM37O94972 964 aa11.84□□□□□ -0.51
HERPUD2-203ENST00000413517 PDE3BQ13370 1112 aa11.84□□□□□ -0.51
HERPUD2-203ENST00000413517 FAM196AQ6ZSG2 479 aa11.84□□□□□ -0.51
HERPUD2-203ENST00000413517 NLRP2Q9NX02 1062 aa11.84□□□□□ -0.51
HERPUD2-203ENST00000413517 ZBTB12Q9Y330 459 aaPredicted RBP11.84□□□□□ -0.51
HERPUD2-203ENST00000413517 OVOS2A0A0G2JMS6 1433 aa11.84□□□□□ -0.51
HERPUD2-203ENST00000413517 KIF7Q2M1P5 1343 aa11.84□□□□□ -0.51
HERPUD2-203ENST00000413517 EN1Q05925 392 aaPredicted RBP11.83□□□□□ -0.52
HERPUD2-203ENST00000413517 DDB1Q16531 1140 aa11.83□□□□□ -0.52
HERPUD2-203ENST00000413517 PTF1AQ7RTS3 328 aa11.83□□□□□ -0.52
HERPUD2-203ENST00000413517 MARCH10Q8NA82 808 aaPredicted RBP11.83□□□□□ -0.52
HERPUD2-203ENST00000413517 LTV1Q96GA3 475 aaPredicted RBP11.83□□□□□ -0.52
HERPUD2-203ENST00000413517 RGPD3A6NKT7 1758 aaPredicted RBP11.82□□□□□ -0.52
HERPUD2-203ENST00000413517 RGPD4Q7Z3J3 1758 aa11.82□□□□□ -0.52
HERPUD2-203ENST00000413517 NHSQ6T4R5 1651 aa11.82□□□□□ -0.52
HERPUD2-203ENST00000413517 PANK3Q9H999 370 aa11.82□□□□□ -0.52
HERPUD2-203ENST00000413517 EMILIN1Q9Y6C2 1016 aa11.82□□□□□ -0.52
HERPUD2-203ENST00000413517 MEGF6O75095 1541 aa11.81□□□□□ -0.52
HERPUD2-203ENST00000413517 BAG6P46379 1132 aa11.81□□□□□ -0.52
HERPUD2-203ENST00000413517 AMPHP49418 695 aa11.81□□□□□ -0.52
HERPUD2-203ENST00000413517 SF3B2Q13435 895 aaKnown RBP11.81□□□□□ -0.52
HERPUD2-203ENST00000413517 CDCA7Q9BWT1 371 aaPredicted RBP11.81□□□□□ -0.52
HERPUD2-203ENST00000413517 CGNL1Q0VF96 1302 aa11.81□□□□□ -0.52
HERPUD2-203ENST00000413517 BTAF1O14981 1849 aa11.81□□□□□ -0.52
HERPUD2-203ENST00000413517 DOT1LQ8TEK3 1739 aa11.8□□□□□ -0.52
HERPUD2-203ENST00000413517 BCL9O00512 1426 aa11.8□□□□□ -0.52
HERPUD2-203ENST00000413517 HSP90AB2PQ58FF8 381 aa11.8□□□□□ -0.52
HERPUD2-203ENST00000413517 INSRP06213 1382 aa11.79□□□□□ -0.52
HERPUD2-203ENST00000413517 FLT4P35916 1363 aa11.79□□□□□ -0.52
HERPUD2-203ENST00000413517 IL2RBP14784 551 aa11.79□□□□□ -0.52
HERPUD2-203ENST00000413517 EZH2Q15910 746 aaKnown RBP11.79□□□□□ -0.52
HERPUD2-203ENST00000413517 NBPF6Q5VWK0 638 aa11.79□□□□□ -0.52
HERPUD2-203ENST00000413517 HS6ST3Q8IZP7 471 aa11.79□□□□□ -0.52
HERPUD2-203ENST00000413517 USHBP1Q8N6Y0 703 aa11.79□□□□□ -0.52
HERPUD2-203ENST00000413517 NBPF4Q96M43 638 aa11.79□□□□□ -0.52
HERPUD2-203ENST00000413517 CAMKK2Q96RR4 588 aa11.79□□□□□ -0.52
HERPUD2-203ENST00000413517 CIZ1Q9ULV3 898 aaPredicted RBP11.79□□□□□ -0.52
HERPUD2-203ENST00000413517 PKD1L3Q7Z443 1732 aa11.79□□□□□ -0.52
HERPUD2-203ENST00000413517 SRCAPQ6ZRS2 3230 aa11.79□□□□□ -0.52
HERPUD2-203ENST00000413517 NCAPD2Q15021 1401 aa11.78□□□□□ -0.52
HERPUD2-203ENST00000413517 TMEM132AQ24JP5 1023 aa11.78□□□□□ -0.52
HERPUD2-203ENST00000413517 KIF24Q5T7B8 1368 aa11.78□□□□□ -0.52
HERPUD2-203ENST00000413517 EXOC5O00471 708 aa11.77□□□□□ -0.53
HERPUD2-203ENST00000413517 APBA3O96018 575 aa11.77□□□□□ -0.53
HERPUD2-203ENST00000413517 SPINK5Q9NQ38 1064 aaPredicted RBP11.77□□□□□ -0.53
HERPUD2-203ENST00000413517 POLKQ9UBT6 870 aa11.77□□□□□ -0.53
HERPUD2-203ENST00000413517 WASHC2AQ641Q2 1341 aa11.77□□□□□ -0.53
HERPUD2-203ENST00000413517 TOGARAM1Q9Y4F4 1720 aa11.77□□□□□ -0.53
HERPUD2-203ENST00000413517 SMG6Q86US8 1419 aaKnown RBP11.77□□□□□ -0.53
HERPUD2-203ENST00000413517 TNNT2P45379 298 aaPredicted RBP11.76□□□□□ -0.53
HERPUD2-203ENST00000413517 ITGB4P16144 1822 aa11.76□□□□□ -0.53
HERPUD2-203ENST00000413517 KCNQ2O43526 872 aa11.75□□□□□ -0.53
HERPUD2-203ENST00000413517 MIER1Q8N108 512 aa11.75□□□□□ -0.53
HERPUD2-203ENST00000413517 NSD2O96028 1365 aa11.75□□□□□ -0.53
HERPUD2-203ENST00000413517 PSDA5PKW4 1024 aaPredicted RBP11.74□□□□□ -0.53
HERPUD2-203ENST00000413517 PER1O15534 1290 aaPredicted RBP11.74□□□□□ -0.53
HERPUD2-203ENST00000413517 BCL11BQ9C0K0 894 aaPredicted RBP11.74□□□□□ -0.53
HERPUD2-203ENST00000413517 PARD3Q8TEW0 1356 aa11.74□□□□□ -0.53
HERPUD2-203ENST00000413517 PPM1GO15355 546 aaPredicted RBP11.73□□□□□ -0.53
HERPUD2-203ENST00000413517 LY75O60449 1722 aa11.73□□□□□ -0.53
HERPUD2-203ENST00000413517 LRP5O75197 1615 aa11.73□□□□□ -0.53
HERPUD2-203ENST00000413517 ACSBG1Q96GR2 724 aa11.73□□□□□ -0.53
HERPUD2-203ENST00000413517 PAPPAQ13219 1627 aa11.72□□□□□ -0.53
HERPUD2-203ENST00000413517 HOMEZQ8IX15 550 aa11.72□□□□□ -0.53
HERPUD2-203ENST00000413517 EYA1Q99502 592 aa11.72□□□□□ -0.53
HERPUD2-203ENST00000413517 TUBGCP6Q96RT7 1819 aa11.72□□□□□ -0.53
HERPUD2-203ENST00000413517 CASZ1Q86V15 1759 aa11.72□□□□□ -0.53
HERPUD2-203ENST00000413517 EIF4A2Q14240 407 aaKnown RBP11.71□□□□□ -0.53
HERPUD2-203ENST00000413517 R3HDM1Q15032 1099 aaKnown RBP11.71□□□□□ -0.53
HERPUD2-203ENST00000413517 DDX54Q8TDD1 881 aaKnown RBP11.71□□□□□ -0.53
HERPUD2-203ENST00000413517 KNSTRNQ9Y448 316 aa11.71□□□□□ -0.53
HERPUD2-203ENST00000413517 VIRMAQ69YN4 1812 aaKnown RBP11.71□□□□□ -0.54
HERPUD2-203ENST00000413517 PLSCR1O15162 318 aa11.7□□□□□ -0.54
HERPUD2-203ENST00000413517 MORC1Q86VD1 984 aa11.7□□□□□ -0.54
HERPUD2-203ENST00000413517 ZCRB1Q8TBF4 217 aaKnown RBP11.7□□□□□ -0.54
HERPUD2-203ENST00000413517 ANO8Q9HCE9 1232 aaPredicted RBP11.7□□□□□ -0.54
HERPUD2-203ENST00000413517 CAPN15O75808 1086 aa11.69□□□□□ -0.54
HERPUD2-203ENST00000413517 RAPGEF4Q8WZA2 1011 aa11.69□□□□□ -0.54
HERPUD2-203ENST00000413517 ZBTB47Q9UFB7 747 aaPredicted RBP11.69□□□□□ -0.54
HERPUD2-203ENST00000413517 IGSF1Q8N6C5 1336 aa11.68□□□□□ -0.54
HERPUD2-203ENST00000413517 TAF1LQ8IZX4 1826 aa11.68□□□□□ -0.54
HERPUD2-203ENST00000413517 CYP27B1O15528 508 aa11.68□□□□□ -0.54
HERPUD2-203ENST00000413517 TATP17735 454 aaPredicted RBP11.68□□□□□ -0.54
HERPUD2-203ENST00000413517 TXNRD1Q16881 649 aa11.67□□□□□ -0.54
HERPUD2-203ENST00000413517 CC2D1BQ5T0F9 858 aaKnown RBP11.67□□□□□ -0.54
HERPUD2-203ENST00000413517 NPC1L1Q9UHC9 1359 aa11.67□□□□□ -0.54
HERPUD2-203ENST00000413517 COL3A1P02461 1466 aaPredicted RBP11.66□□□□□ -0.54
HERPUD2-203ENST00000413517 PRIM1P49642 420 aaKnown RBP11.66□□□□□ -0.54
HERPUD2-203ENST00000413517 QSER1Q2KHR3 1735 aa11.66□□□□□ -0.54
HERPUD2-203ENST00000413517 PCDH11XQ9BZA7 1347 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms