RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 WDR17Q8IZU2 1322 aa8.69□□□□□ -1.02
VPS41-204ENST00000413141 MAP3K5Q99683 1374 aa8.69□□□□□ -1.02
VPS41-204ENST00000413141 ADAMTS7Q9UKP4 1686 aa8.69□□□□□ -1.02
VPS41-204ENST00000413141 NWD2Q9ULI1 1742 aa8.68□□□□□ -1.02
VPS41-204ENST00000413141 WNK3Q9BYP7 1800 aa8.68□□□□□ -1.02
VPS41-204ENST00000413141 CSB-PGBD3P0DP91 1061 aa8.68□□□□□ -1.02
VPS41-204ENST00000413141 MYH16Q9H6N6 1097 aa8.68□□□□□ -1.02
VPS41-204ENST00000413141 NLRP2Q9NX02 1062 aa8.68□□□□□ -1.02
VPS41-204ENST00000413141 FANCIQ9NVI1 1328 aa8.68□□□□□ -1.02
VPS41-204ENST00000413141 JCADQ9P266 1359 aa8.68□□□□□ -1.02
VPS41-204ENST00000413141 OVOS2A0A0G2JMS6 1433 aa8.67□□□□□ -1.02
VPS41-204ENST00000413141 FAM83GA6ND36 823 aa8.67□□□□□ -1.02
VPS41-204ENST00000413141 CRB1P82279 1406 aa8.67□□□□□ -1.02
VPS41-204ENST00000413141 CALD1Q05682 793 aaKnown RBP8.67□□□□□ -1.02
VPS41-204ENST00000413141 RNF123Q5XPI4 1314 aa8.67□□□□□ -1.02
VPS41-204ENST00000413141 THUMPD2Q9BTF0 503 aaKnown RBP8.67□□□□□ -1.02
VPS41-204ENST00000413141 SUPT16HQ9Y5B9 1047 aaKnown RBP8.67□□□□□ -1.02
VPS41-204ENST00000413141 GTF3C3Q9Y5Q9 886 aa8.67□□□□□ -1.02
VPS41-204ENST00000413141 SHANK3Q9BYB0 1731 aa8.66□□□□□ -1.02
VPS41-204ENST00000413141 LRP6O75581 1613 aa8.66□□□□□ -1.02
VPS41-204ENST00000413141 TSR2Q969E8 191 aaKnown RBP8.66□□□□□ -1.02
VPS41-204ENST00000413141 IFT57Q9NWB7 429 aa8.66□□□□□ -1.02
VPS41-204ENST00000413141 RCAN3Q9UKA8 241 aa8.66□□□□□ -1.02
VPS41-204ENST00000413141 SLIT2O94813 1529 aa8.65□□□□□ -1.02
VPS41-204ENST00000413141 GNAT3A8MTJ3 354 aa8.65□□□□□ -1.02
VPS41-204ENST00000413141 HTATSF1O43719 755 aaKnown RBP8.65□□□□□ -1.02
VPS41-204ENST00000413141 ZNF853P0CG23 659 aa8.65□□□□□ -1.02
VPS41-204ENST00000413141 DCTN1Q14203 1278 aa8.65□□□□□ -1.02
VPS41-204ENST00000413141 AMOTQ4VCS5 1084 aa8.65□□□□□ -1.02
VPS41-204ENST00000413141 PLEKHO1Q53GL0 409 aaPredicted RBP8.65□□□□□ -1.02
VPS41-204ENST00000413141 TOM1L2Q6ZVM7 507 aa8.65□□□□□ -1.02
VPS41-204ENST00000413141 MCM10Q7L590 875 aa8.65□□□□□ -1.02
VPS41-204ENST00000413141 RAPGEF4Q8WZA2 1011 aa8.65□□□□□ -1.02
VPS41-204ENST00000413141 BTG4Q9NY30 223 aa8.65□□□□□ -1.02
VPS41-204ENST00000413141 VIRMAQ69YN4 1812 aaKnown RBP8.65□□□□□ -1.02
VPS41-204ENST00000413141 CEMIPQ8WUJ3 1361 aa8.64□□□□□ -1.03
VPS41-204ENST00000413141 SIPA1L3O60292 1781 aaPredicted RBP8.64□□□□□ -1.03
VPS41-204ENST00000413141 SPATA31A6Q5VVP1 1343 aa8.64□□□□□ -1.03
VPS41-204ENST00000413141 NEFLP07196 543 aa8.64□□□□□ -1.03
VPS41-204ENST00000413141 TATP17735 454 aaPredicted RBP8.64□□□□□ -1.03
VPS41-204ENST00000413141 RRP1P56182 461 aaKnown RBP8.64□□□□□ -1.03
VPS41-204ENST00000413141 GNAI1P63096 354 aa8.64□□□□□ -1.03
VPS41-204ENST00000413141 ZNF530Q6P9A1 599 aaPredicted RBP8.64□□□□□ -1.03
VPS41-204ENST00000413141 LARP1Q6PKG0 1096 aaKnown RBP8.64□□□□□ -1.03
VPS41-204ENST00000413141 RTF1Q92541 710 aaKnown RBP8.64□□□□□ -1.03
VPS41-204ENST00000413141 CFAP44Q96MT7 982 aa8.64□□□□□ -1.03
VPS41-204ENST00000413141 CARD10Q9BWT7 1032 aa8.64□□□□□ -1.03
VPS41-204ENST00000413141 STRN4Q9NRL3 753 aa8.64□□□□□ -1.03
VPS41-204ENST00000413141 MRC1P22897 1456 aa8.64□□□□□ -1.03
VPS41-204ENST00000413141 DISP2A7MBM2 1401 aa8.63□□□□□ -1.03
VPS41-204ENST00000413141 KDM3BQ7LBC6 1761 aa8.63□□□□□ -1.03
VPS41-204ENST00000413141 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.63□□□□□ -1.03
VPS41-204ENST00000413141 NUTM2BA6NNL0 878 aaPredicted RBP8.63□□□□□ -1.03
VPS41-204ENST00000413141 NUTM2EB1AL46 878 aaPredicted RBP8.63□□□□□ -1.03
VPS41-204ENST00000413141 ADAMTS2O95450 1211 aa8.63□□□□□ -1.03
VPS41-204ENST00000413141 AKAP4Q5JQC9 854 aa8.63□□□□□ -1.03
VPS41-204ENST00000413141 NUTM2AQ8IVF1 878 aaPredicted RBP8.63□□□□□ -1.03
VPS41-204ENST00000413141 MBIPQ9NS73 344 aa8.63□□□□□ -1.03
VPS41-204ENST00000413141 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.63□□□□□ -1.034e-7■■□□□ 13.6
VPS41-204ENST00000413141 LAS1LQ9Y4W2 734 aaKnown RBP8.63□□□□□ -1.03
VPS41-204ENST00000413141 SCN11AQ9UI33 1791 aa8.63□□□□□ -1.03
VPS41-204ENST00000413141 KDM6AO15550 1401 aaPredicted RBP8.63□□□□□ -1.03
VPS41-204ENST00000413141 CT47B1P0C2W7 299 aaPredicted RBP8.62□□□□□ -1.03
VPS41-204ENST00000413141 HSPA1LP34931 641 aa8.62□□□□□ -1.03
VPS41-204ENST00000413141 EVA1CP58658 441 aa8.62□□□□□ -1.03
VPS41-204ENST00000413141 EXOSC9Q06265 439 aaKnown RBP8.62□□□□□ -1.03
VPS41-204ENST00000413141 C1orf141Q5JVX7 400 aa8.62□□□□□ -1.03
VPS41-204ENST00000413141 SPG7Q9UQ90 795 aa8.62□□□□□ -1.03
VPS41-204ENST00000413141 PCDH11XQ9BZA7 1347 aa8.61□□□□□ -1.03
VPS41-204ENST00000413141 PCDH11YQ9BZA8 1340 aa8.61□□□□□ -1.03
VPS41-204ENST00000413141 CHL1O00533 1208 aa8.61□□□□□ -1.03
VPS41-204ENST00000413141 IL2RBP14784 551 aa8.61□□□□□ -1.03
VPS41-204ENST00000413141 PHKG2P15735 406 aa8.61□□□□□ -1.03
VPS41-204ENST00000413141 FKBP8Q14318 412 aa8.61□□□□□ -1.03
VPS41-204ENST00000413141 IL17REQ8NFR9 667 aa8.61□□□□□ -1.03
VPS41-204ENST00000413141 TOGARAM1Q9Y4F4 1720 aa8.6□□□□□ -1.03
VPS41-204ENST00000413141 BCL9LQ86UU0 1499 aa8.6□□□□□ -1.03
VPS41-204ENST00000413141 RNMTO43148 476 aaKnown RBP8.6□□□□□ -1.03
VPS41-204ENST00000413141 RARSP54136 660 aaKnown RBP8.6□□□□□ -1.03
VPS41-204ENST00000413141 IRX6P78412 446 aaPredicted RBP8.6□□□□□ -1.03
VPS41-204ENST00000413141 TNS2Q63HR2 1409 aa8.6□□□□□ -1.03
VPS41-204ENST00000413141 SPATA31A1Q5TZJ5 1347 aa8.59□□□□□ -1.03
VPS41-204ENST00000413141 PAPPAQ13219 1627 aa8.59□□□□□ -1.03
VPS41-204ENST00000413141 CYP27B1O15528 508 aa8.59□□□□□ -1.03
VPS41-204ENST00000413141 BCAR3O75815 825 aa8.59□□□□□ -1.03
VPS41-204ENST00000413141 MPRIPQ6WCQ1 1025 aa8.59□□□□□ -1.03
VPS41-204ENST00000413141 IFNL2Q8IZJ0 200 aa8.59□□□□□ -1.03
VPS41-204ENST00000413141 LGR6Q9HBX8 967 aa8.59□□□□□ -1.03
VPS41-204ENST00000413141 BABAM1Q9NWV8 329 aa8.59□□□□□ -1.03
VPS41-204ENST00000413141 USP35Q9P2H5 1018 aa8.59□□□□□ -1.03
VPS41-204ENST00000413141 TSPYL4Q9UJ04 414 aa8.59□□□□□ -1.03
VPS41-204ENST00000413141 TSPYL6Q8N831 410 aa8.58□□□□□ -1.04
VPS41-204ENST00000413141 ZCRB1Q8TBF4 217 aaKnown RBP8.58□□□□□ -1.04
VPS41-204ENST00000413141 ZNF428Q96B54 188 aa8.58□□□□□ -1.04
VPS41-204ENST00000413141 C8orf37Q96NL8 207 aa8.58□□□□□ -1.04
VPS41-204ENST00000413141 SPATA31A5Q5VU36 1347 aa8.57□□□□□ -1.04
VPS41-204ENST00000413141 SPATA31A7Q8IWB4 1347 aa8.57□□□□□ -1.04
VPS41-204ENST00000413141 GLI3P10071 1580 aa8.57□□□□□ -1.04
VPS41-204ENST00000413141 THSD7AQ9UPZ6 1657 aa8.57□□□□□ -1.04
VPS41-204ENST00000413141 PLIN1O60240 522 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms