RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 DDX54Q8TDD1 881 aaKnown RBP26.24■■□□□ 1.79
SF3A1-202ENST00000411423 WASHC2AQ641Q2 1341 aa26.23■■□□□ 1.79
SF3A1-202ENST00000411423 NCAPD2Q15021 1401 aa26.22■■□□□ 1.79
SF3A1-202ENST00000411423 NSD2O96028 1365 aa26.2■■□□□ 1.79
SF3A1-202ENST00000411423 ZCRB1Q8TBF4 217 aaKnown RBP26.2■■□□□ 1.78
SF3A1-202ENST00000411423 BTAF1O14981 1849 aa26.19■■□□□ 1.78
SF3A1-202ENST00000411423 AMER1Q5JTC6 1135 aaPredicted RBP26.19■■□□□ 1.78
SF3A1-202ENST00000411423 ANO8Q9HCE9 1232 aaPredicted RBP26.19■■□□□ 1.78
SF3A1-202ENST00000411423 DOT1LQ8TEK3 1739 aa26.17■■□□□ 1.78
SF3A1-202ENST00000411423 EYA1Q99502 592 aa26.17■■□□□ 1.78
SF3A1-202ENST00000411423 PER1O15534 1290 aaPredicted RBP26.16■■□□□ 1.78
SF3A1-202ENST00000411423 EIF4A2Q14240 407 aaKnown RBP26.16■■□□□ 1.78
SF3A1-202ENST00000411423 RAPGEF4Q8WZA2 1011 aa26.16■■□□□ 1.78
SF3A1-202ENST00000411423 KNSTRNQ9Y448 316 aa26.16■■□□□ 1.78
SF3A1-202ENST00000411423 LRP5O75197 1615 aa26.16■■□□□ 1.78
SF3A1-202ENST00000411423 TXNRD1Q16881 649 aa26.15■■□□□ 1.78
SF3A1-202ENST00000411423 TATP17735 454 aaPredicted RBP26.14■■□□□ 1.78
SF3A1-202ENST00000411423 MORC1Q86VD1 984 aa26.14■■□□□ 1.78
SF3A1-202ENST00000411423 PKD1L3Q7Z443 1732 aa26.12■■□□□ 1.77
SF3A1-202ENST00000411423 PRIM1P49642 420 aaKnown RBP26.11■■□□□ 1.77
SF3A1-202ENST00000411423 NBPF14Q5TI25 921 aa26.11■■□□□ 1.77
SF3A1-202ENST00000411423 CYP27B1O15528 508 aa26.1■■□□□ 1.77
SF3A1-202ENST00000411423 PAPPAQ13219 1627 aa26.08■■□□□ 1.77
SF3A1-202ENST00000411423 KAT6BQ8WYB5 2073 aa26.08■■□□□ 1.77
SF3A1-202ENST00000411423 PDGFDQ9GZP0 370 aaPredicted RBP26.07■■□□□ 1.76
SF3A1-202ENST00000411423 LRRC4BQ9NT99 713 aa26.07■■□□□ 1.76
SF3A1-202ENST00000411423 TOGARAM1Q9Y4F4 1720 aa26.07■■□□□ 1.76
SF3A1-202ENST00000411423 SYTL4Q96C24 671 aaPredicted RBP26.06■■□□□ 1.76
SF3A1-202ENST00000411423 IGSF1Q8N6C5 1336 aa26.06■■□□□ 1.76
SF3A1-202ENST00000411423 PCDH11XQ9BZA7 1347 aa26.06■■□□□ 1.76
SF3A1-202ENST00000411423 PCDH11YQ9BZA8 1340 aa26.06■■□□□ 1.76
SF3A1-202ENST00000411423 CASZ1Q86V15 1759 aa26.05■■□□□ 1.76
SF3A1-202ENST00000411423 CC2D1BQ5T0F9 858 aaKnown RBP26.04■■□□□ 1.76
SF3A1-202ENST00000411423 KCNQ4P56696 695 aa26.02■■□□□ 1.76
SF3A1-202ENST00000411423 LY75O60449 1722 aa26.01■■□□□ 1.75
SF3A1-202ENST00000411423 SLC15A2Q16348 729 aa26■■□□□ 1.75
SF3A1-202ENST00000411423 ZNF827Q17R98 1081 aa26■■□□□ 1.75
SF3A1-202ENST00000411423 IL13P35225 146 aa25.99■■□□□ 1.75
SF3A1-202ENST00000411423 CNGB1Q14028 1251 aaPredicted RBP25.99■■□□□ 1.75
SF3A1-202ENST00000411423 AEBP1Q8IUX7 1158 aa25.99■■□□□ 1.75
SF3A1-202ENST00000411423 NKX1-1Q15270 411 aaPredicted RBP25.98■■□□□ 1.75
SF3A1-202ENST00000411423 STK32BQ9NY57 414 aa25.98■■□□□ 1.75
SF3A1-202ENST00000411423 NPC1L1Q9UHC9 1359 aa25.97■■□□□ 1.75
SF3A1-202ENST00000411423 MTHFSP49914 203 aa25.97■■□□□ 1.75
SF3A1-202ENST00000411423 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.97■■□□□ 1.759e-7■□□□□ 9.7
SF3A1-202ENST00000411423 SPG7Q9UQ90 795 aa25.97■■□□□ 1.75
SF3A1-202ENST00000411423 ITGB4P16144 1822 aa25.97■■□□□ 1.75
SF3A1-202ENST00000411423 PHKG2P15735 406 aa25.95■■□□□ 1.74
SF3A1-202ENST00000411423 SLC27A3Q5K4L6 730 aa25.93■■□□□ 1.74
SF3A1-202ENST00000411423 MPRIPQ6WCQ1 1025 aa25.93■■□□□ 1.74
SF3A1-202ENST00000411423 AKT1S1Q96B36 256 aa25.93■■□□□ 1.74
SF3A1-202ENST00000411423 ZBTB7AO95365 584 aa25.91■■□□□ 1.74
SF3A1-202ENST00000411423 SULT6B1Q6IMI4 303 aa25.91■■□□□ 1.74
SF3A1-202ENST00000411423 IFNL2Q8IZJ0 200 aa25.91■■□□□ 1.74
SF3A1-202ENST00000411423 PIGBQ92521 554 aa25.91■■□□□ 1.74
SF3A1-202ENST00000411423 KDRP35968 1356 aa25.91■■□□□ 1.74
SF3A1-202ENST00000411423 COL3A1P02461 1466 aaPredicted RBP25.91■■□□□ 1.74
SF3A1-202ENST00000411423 PLEKHG2Q9H7P9 1386 aa25.9■■□□□ 1.74
SF3A1-202ENST00000411423 TUBGCP6Q96RT7 1819 aa25.9■■□□□ 1.74
SF3A1-202ENST00000411423 SPON1Q9HCB6 807 aa25.89■■□□□ 1.74
SF3A1-202ENST00000411423 CCNL1Q9UK58 526 aaPredicted RBP25.89■■□□□ 1.74
SF3A1-202ENST00000411423 PALLDQ8WX93 1383 aa25.88■■□□□ 1.73
SF3A1-202ENST00000411423 KDM6AO15550 1401 aaPredicted RBP25.87■■□□□ 1.73
SF3A1-202ENST00000411423 ATF5Q9Y2D1 282 aaPredicted RBP25.86■■□□□ 1.73
SF3A1-202ENST00000411423 PTGER2P43116 358 aa25.85■■□□□ 1.73
SF3A1-202ENST00000411423 PLEKHO1Q53GL0 409 aaPredicted RBP25.85■■□□□ 1.73
SF3A1-202ENST00000411423 QSER1Q2KHR3 1735 aa25.85■■□□□ 1.73
SF3A1-202ENST00000411423 HMOX1P09601 288 aa25.84■■□□□ 1.73
SF3A1-202ENST00000411423 ZNF530Q6P9A1 599 aaPredicted RBP25.84■■□□□ 1.73
SF3A1-202ENST00000411423 PNPLA7Q6ZV29 1317 aa25.84■■□□□ 1.73
SF3A1-202ENST00000411423 ASAP1Q9ULH1 1129 aa25.83■■□□□ 1.73
SF3A1-202ENST00000411423 C5P01031 1676 aa25.83■■□□□ 1.73
SF3A1-202ENST00000411423 TAF1LQ8IZX4 1826 aa25.82■■□□□ 1.72
SF3A1-202ENST00000411423 DIAPH1O60610 1272 aaKnown RBP25.82■■□□□ 1.72
SF3A1-202ENST00000411423 AMOTQ4VCS5 1084 aa25.81■■□□□ 1.72
SF3A1-202ENST00000411423 SGIP1Q9BQI5 828 aa25.81■■□□□ 1.72
SF3A1-202ENST00000411423 TMOD3Q9NYL9 352 aa25.81■■□□□ 1.72
SF3A1-202ENST00000411423 MTFR1LQ9H019 292 aa25.79■■□□□ 1.72
SF3A1-202ENST00000411423 ATG3Q9NT62 314 aa25.79■■□□□ 1.72
SF3A1-202ENST00000411423 SMARCC1Q92922 1105 aaPredicted RBP25.78■■□□□ 1.72
SF3A1-202ENST00000411423 DCAF5Q96JK2 942 aa25.78■■□□□ 1.72
SF3A1-202ENST00000411423 TFCP2L1Q9NZI6 479 aa25.78■■□□□ 1.72
SF3A1-202ENST00000411423 AMIGO3Q86WK7 504 aa25.77■■□□□ 1.72
SF3A1-202ENST00000411423 ERVV-2B6SEH9 535 aa25.76■■□□□ 1.71
SF3A1-202ENST00000411423 PPP2R1AP30153 589 aa25.76■■□□□ 1.71
SF3A1-202ENST00000411423 PPP1R1BQ9UD71 204 aaPredicted RBP25.76■■□□□ 1.71
SF3A1-202ENST00000411423 C4BP0C0L5 1744 aa25.76■■□□□ 1.71
SF3A1-202ENST00000411423 LOC102724428A0A0B4J2F2 783 aa25.75■■□□□ 1.71
SF3A1-202ENST00000411423 HSP90AB1P08238 724 aaKnown RBP25.75■■□□□ 1.71
SF3A1-202ENST00000411423 SIK1P57059 783 aa25.75■■□□□ 1.71
SF3A1-202ENST00000411423 SMIM5Q71RC9 77 aa25.75■■□□□ 1.71
SF3A1-202ENST00000411423 ITPK1Q13572 414 aa25.74■■□□□ 1.71
SF3A1-202ENST00000411423 COL23A1Q86Y22 540 aaPredicted RBP25.74■■□□□ 1.71
SF3A1-202ENST00000411423 SLC4A9Q96Q91 983 aa25.74■■□□□ 1.71
SF3A1-202ENST00000411423 COL24A1Q17RW2 1714 aa25.74■■□□□ 1.71
SF3A1-202ENST00000411423 MTHFSDQ2M296 383 aaKnown RBP25.73■■□□□ 1.71
SF3A1-202ENST00000411423 C1orf141Q5JVX7 400 aa25.73■■□□□ 1.71
SF3A1-202ENST00000411423 LINC00116Q8NCU8 138 aa25.73■■□□□ 1.71
SF3A1-202ENST00000411423 SCN11AQ9UI33 1791 aa25.72■■□□□ 1.71
SF3A1-202ENST00000411423 U2SURPO15042 1029 aaKnown RBP25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms