RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 RAPGEF4Q8WZA2 1011 aa20.42■□□□□ 0.86
CBX3-203ENST00000409747 NBPF4Q96M43 638 aa20.42■□□□□ 0.86
CBX3-203ENST00000409747 CCER1Q8TC90 406 aaPredicted RBP20.41■□□□□ 0.86
CBX3-203ENST00000409747 EIF4G2P78344 907 aaKnown RBP eCLIP20.4■□□□□ 0.86
CBX3-203ENST00000409747 HSP90AB2PQ58FF8 381 aa20.4■□□□□ 0.86
CBX3-203ENST00000409747 ANKRD26Q9UPS8 1709 aa20.4■□□□□ 0.86
CBX3-203ENST00000409747 SLC27A3Q5K4L6 730 aa20.39■□□□□ 0.86
CBX3-203ENST00000409747 SYTL4Q96C24 671 aaPredicted RBP20.39■□□□□ 0.86
CBX3-203ENST00000409747 ZBTB7AO95365 584 aa20.39■□□□□ 0.85
CBX3-203ENST00000409747 TATP17735 454 aaPredicted RBP20.39■□□□□ 0.85
CBX3-203ENST00000409747 USHBP1Q8N6Y0 703 aa20.38■□□□□ 0.85
CBX3-203ENST00000409747 PDGFDQ9GZP0 370 aaPredicted RBP20.38■□□□□ 0.85
CBX3-203ENST00000409747 PRIM1P49642 420 aaKnown RBP20.37■□□□□ 0.85
CBX3-203ENST00000409747 POLR3GLQ9BT43 218 aa20.37■□□□□ 0.85
CBX3-203ENST00000409747 MTFR1LQ9H019 292 aa20.37■□□□□ 0.85
CBX3-203ENST00000409747 EMILIN1Q9Y6C2 1016 aa20.36■□□□□ 0.85
CBX3-203ENST00000409747 PCDH11XQ9BZA7 1347 aa20.36■□□□□ 0.85
CBX3-203ENST00000409747 PCDH11YQ9BZA8 1340 aa20.36■□□□□ 0.85
CBX3-203ENST00000409747 DCAF8L1A6NGE4 600 aa20.36■□□□□ 0.85
CBX3-203ENST00000409747 LY75O60449 1722 aa20.35■□□□□ 0.85
CBX3-203ENST00000409747 LRRC4BQ9NT99 713 aa20.35■□□□□ 0.85
CBX3-203ENST00000409747 QSER1Q2KHR3 1735 aa20.34■□□□□ 0.85
CBX3-203ENST00000409747 NSD2O96028 1365 aa20.34■□□□□ 0.85
CBX3-203ENST00000409747 PPM1GO15355 546 aaPredicted RBP20.33■□□□□ 0.85
CBX3-203ENST00000409747 HSPA5P11021 654 aaKnown RBP20.33■□□□□ 0.85
CBX3-203ENST00000409747 PTGER2P43116 358 aa20.33■□□□□ 0.85
CBX3-203ENST00000409747 ATF5Q9Y2D1 282 aaPredicted RBP20.33■□□□□ 0.85
CBX3-203ENST00000409747 MAP2P11137 1827 aaKnown RBP20.33■□□□□ 0.85
CBX3-203ENST00000409747 WASHC2AQ641Q2 1341 aa20.33■□□□□ 0.84
CBX3-203ENST00000409747 ZNF827Q17R98 1081 aa20.33■□□□□ 0.84
CBX3-203ENST00000409747 NCAPD2Q15021 1401 aa20.32■□□□□ 0.84
CBX3-203ENST00000409747 PKD1L3Q7Z443 1732 aa20.32■□□□□ 0.84
CBX3-203ENST00000409747 AKT1S1Q96B36 256 aa20.31■□□□□ 0.84
CBX3-203ENST00000409747 HMGB2P26583 209 aaKnown RBP20.3■□□□□ 0.84
CBX3-203ENST00000409747 SLC16A10Q8TF71 515 aa20.28■□□□□ 0.84
CBX3-203ENST00000409747 POLKQ9UBT6 870 aa20.28■□□□□ 0.84
CBX3-203ENST00000409747 CCNL1Q9UK58 526 aaPredicted RBP20.28■□□□□ 0.84
CBX3-203ENST00000409747 SGIP1Q9BQI5 828 aa20.27■□□□□ 0.83
CBX3-203ENST00000409747 PANK3Q9H999 370 aa20.27■□□□□ 0.83
CBX3-203ENST00000409747 TFCP2L1Q9NZI6 479 aa20.27■□□□□ 0.83
CBX3-203ENST00000409747 SPG7Q9UQ90 795 aa20.27■□□□□ 0.83
CBX3-203ENST00000409747 PLEKHG2Q9H7P9 1386 aa20.25■□□□□ 0.83
CBX3-203ENST00000409747 TUBGCP6Q96RT7 1819 aa20.25■□□□□ 0.83
CBX3-203ENST00000409747 CYP27B1O15528 508 aa20.25■□□□□ 0.83
CBX3-203ENST00000409747 ARXQ96QS3 562 aa20.24■□□□□ 0.83
CBX3-203ENST00000409747 EYA1Q99502 592 aa20.24■□□□□ 0.83
CBX3-203ENST00000409747 FHDC1Q9C0D6 1143 aaPredicted RBP20.24■□□□□ 0.83
CBX3-203ENST00000409747 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.24■□□□□ 0.835e-7■■■□□ 16.3
CBX3-203ENST00000409747 PNPLA7Q6ZV29 1317 aa20.24■□□□□ 0.83
CBX3-203ENST00000409747 TOGARAM1Q9Y4F4 1720 aa20.24■□□□□ 0.83
CBX3-203ENST00000409747 TNNT2P45379 298 aaPredicted RBP20.24■□□□□ 0.83
CBX3-203ENST00000409747 KCNQ4P56696 695 aa20.24■□□□□ 0.83
CBX3-203ENST00000409747 C5P01031 1676 aa20.23■□□□□ 0.83
CBX3-203ENST00000409747 ITGB4P16144 1822 aa20.23■□□□□ 0.83
CBX3-203ENST00000409747 PALLDQ8WX93 1383 aa20.23■□□□□ 0.83
CBX3-203ENST00000409747 MAP3K5Q99683 1374 aa20.23■□□□□ 0.83
CBX3-203ENST00000409747 POLD1P28340 1107 aa20.22■□□□□ 0.83
CBX3-203ENST00000409747 MPRIPQ6WCQ1 1025 aa20.22■□□□□ 0.83
CBX3-203ENST00000409747 SYT17Q9BSW7 474 aa20.22■□□□□ 0.83
CBX3-203ENST00000409747 COL24A1Q17RW2 1714 aa20.22■□□□□ 0.83
CBX3-203ENST00000409747 YY1P25490 414 aa20.22■□□□□ 0.83
CBX3-203ENST00000409747 NKX1-1Q15270 411 aaPredicted RBP20.22■□□□□ 0.83
CBX3-203ENST00000409747 SMARCC1Q92922 1105 aaPredicted RBP20.22■□□□□ 0.83
CBX3-203ENST00000409747 EIF4A2Q14240 407 aaKnown RBP20.21■□□□□ 0.83
CBX3-203ENST00000409747 KNSTRNQ9Y448 316 aa20.19■□□□□ 0.82
CBX3-203ENST00000409747 TAF1LQ8IZX4 1826 aa20.18■□□□□ 0.82
CBX3-203ENST00000409747 MORC1Q86VD1 984 aa20.18■□□□□ 0.82
CBX3-203ENST00000409747 IFNL2Q8IZJ0 200 aa20.18■□□□□ 0.82
CBX3-203ENST00000409747 IGSF1Q8N6C5 1336 aa20.17■□□□□ 0.82
CBX3-203ENST00000409747 MSH5O43196 834 aa20.16■□□□□ 0.82
CBX3-203ENST00000409747 PHKG2P15735 406 aa20.16■□□□□ 0.82
CBX3-203ENST00000409747 FLAD1Q8NFF5 587 aa20.16■□□□□ 0.82
CBX3-203ENST00000409747 PIGBQ92521 554 aa20.16■□□□□ 0.82
CBX3-203ENST00000409747 TMOD3Q9NYL9 352 aa20.16■□□□□ 0.82
CBX3-203ENST00000409747 C4BP0C0L5 1744 aa20.15■□□□□ 0.82
CBX3-203ENST00000409747 COL23A1Q86Y22 540 aaPredicted RBP20.13■□□□□ 0.81
CBX3-203ENST00000409747 KIF7Q2M1P5 1343 aa20.12■□□□□ 0.81
CBX3-203ENST00000409747 HSP90AB1P08238 724 aaKnown RBP20.12■□□□□ 0.81
CBX3-203ENST00000409747 AK7Q96M32 723 aa20.12■□□□□ 0.81
CBX3-203ENST00000409747 AMOTQ4VCS5 1084 aa20.11■□□□□ 0.81
CBX3-203ENST00000409747 KLHL34Q8N239 644 aa20.11■□□□□ 0.81
CBX3-203ENST00000409747 UTRNP46939 3433 aa20.11■□□□□ 0.81
CBX3-203ENST00000409747 PLEKHO1Q53GL0 409 aaPredicted RBP20.1■□□□□ 0.81
CBX3-203ENST00000409747 LOC102724428A0A0B4J2F2 783 aa20.1■□□□□ 0.81
CBX3-203ENST00000409747 SIK1P57059 783 aa20.1■□□□□ 0.81
CBX3-203ENST00000409747 AMER1Q5JTC6 1135 aaPredicted RBP20.08■□□□□ 0.81
CBX3-203ENST00000409747 DCAF5Q96JK2 942 aa20.08■□□□□ 0.81
CBX3-203ENST00000409747 UBR3Q6ZT12 1888 aa20.08■□□□□ 0.8
CBX3-203ENST00000409747 ERVV-2B6SEH9 535 aa20.07■□□□□ 0.8
CBX3-203ENST00000409747 ASAP1Q9ULH1 1129 aa20.07■□□□□ 0.8
CBX3-203ENST00000409747 CHD4Q14839 1912 aa20.07■□□□□ 0.8
CBX3-203ENST00000409747 GPR162Q16538 588 aa20.06■□□□□ 0.8
CBX3-203ENST00000409747 MSL1Q68DK7 614 aa20.06■□□□□ 0.8
CBX3-203ENST00000409747 ZNF530Q6P9A1 599 aaPredicted RBP20.06■□□□□ 0.8
CBX3-203ENST00000409747 KDRP35968 1356 aa20.05■□□□□ 0.8
CBX3-203ENST00000409747 SSFA2P28290 1259 aa20.05■□□□□ 0.8
CBX3-203ENST00000409747 C1orf141Q5JVX7 400 aa20.05■□□□□ 0.8
CBX3-203ENST00000409747 ZNF831Q5JPB2 1677 aa20.05■□□□□ 0.8
CBX3-203ENST00000409747 ATP6V1AP38606 617 aa20.05■□□□□ 0.8
CBX3-203ENST00000409747 ATG3Q9NT62 314 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms