RNA–Protein interactions for RNA: ENST00000409531.5

TSPAN4-208, Transcript of tetraspanin 4, humanhuman

TSL 5 BASIC

Gene TSPAN4, Length 1,339 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-208ENST00000409531 WNK3Q9BYP7 1800 aa22.05■■□□□ 1.12
TSPAN4-208ENST00000409531 APBA3O96018 575 aa22.05■■□□□ 1.12
TSPAN4-208ENST00000409531 CCDC184Q52MB2 194 aa22.05■■□□□ 1.12
TSPAN4-208ENST00000409531 USHBP1Q8N6Y0 703 aa22.05■■□□□ 1.12
TSPAN4-208ENST00000409531 RAPGEF4Q8WZA2 1011 aa22.05■■□□□ 1.12
TSPAN4-208ENST00000409531 BCL9O00512 1426 aa22.04■■□□□ 1.12
TSPAN4-208ENST00000409531 TNS2Q63HR2 1409 aa22.04■■□□□ 1.12
TSPAN4-208ENST00000409531 IL13P35225 146 aa22.04■■□□□ 1.12
TSPAN4-208ENST00000409531 EN1Q05925 392 aaPredicted RBP22.03■■□□□ 1.12
TSPAN4-208ENST00000409531 WDR43Q15061 677 aaKnown RBP eCLIP22.03■■□□□ 1.12
TSPAN4-208ENST00000409531 ZCRB1Q8TBF4 217 aaKnown RBP22.03■■□□□ 1.12
TSPAN4-208ENST00000409531 DDX54Q8TDD1 881 aaKnown RBP22.02■■□□□ 1.12
TSPAN4-208ENST00000409531 EYA1Q99502 592 aa22.02■■□□□ 1.12
TSPAN4-208ENST00000409531 RGPD2P0DJD1 1756 aa22.01■■□□□ 1.11
TSPAN4-208ENST00000409531 RGPD1P0DJD0 1748 aa22.01■■□□□ 1.11
TSPAN4-208ENST00000409531 U2SURPO15042 1029 aaKnown RBP22.01■■□□□ 1.11
TSPAN4-208ENST00000409531 TATP17735 454 aaPredicted RBP22.01■■□□□ 1.11
TSPAN4-208ENST00000409531 BCL11BQ9C0K0 894 aaPredicted RBP22.01■■□□□ 1.11
TSPAN4-208ENST00000409531 PNISRQ8TF01 805 aaKnown RBP21.99■■□□□ 1.11
TSPAN4-208ENST00000409531 CAMKK2Q96RR4 588 aa21.99■■□□□ 1.11
TSPAN4-208ENST00000409531 U2AF1L5P0DN76 240 aaPredicted RBP21.98■■□□□ 1.11
TSPAN4-208ENST00000409531 U2AF1Q01081 240 aaKnown RBP eCLIP21.98■■□□□ 1.11
TSPAN4-208ENST00000409531 IGSF1Q8N6C5 1336 aa21.97■■□□□ 1.11
TSPAN4-208ENST00000409531 MEGF6O75095 1541 aa21.97■■□□□ 1.11
TSPAN4-208ENST00000409531 EZH2Q15910 746 aaKnown RBP21.97■■□□□ 1.11
TSPAN4-208ENST00000409531 PTF1AQ7RTS3 328 aa21.96■■□□□ 1.11
TSPAN4-208ENST00000409531 PLSCR1O15162 318 aa21.95■■□□□ 1.1
TSPAN4-208ENST00000409531 PNNQ9H307 717 aaKnown RBP21.95■■□□□ 1.1
TSPAN4-208ENST00000409531 NCAPD2Q15021 1401 aa21.95■■□□□ 1.1
TSPAN4-208ENST00000409531 TNS1Q9HBL0 1735 aaKnown RBP21.94■■□□□ 1.1
TSPAN4-208ENST00000409531 KCNQ2O43526 872 aa21.94■■□□□ 1.1
TSPAN4-208ENST00000409531 ACSBG1Q96GR2 724 aa21.94■■□□□ 1.1
TSPAN4-208ENST00000409531 FCHSD2O94868 740 aa21.93■■□□□ 1.1
TSPAN4-208ENST00000409531 FAM9BQ8IZU0 186 aa21.93■■□□□ 1.1
TSPAN4-208ENST00000409531 KDRP35968 1356 aa21.92■■□□□ 1.1
TSPAN4-208ENST00000409531 SULT6B1Q6IMI4 303 aa21.92■■□□□ 1.1
TSPAN4-208ENST00000409531 ADAMTS8Q9UP79 889 aa21.92■■□□□ 1.1
TSPAN4-208ENST00000409531 SBF2Q86WG5 1849 aa21.92■■□□□ 1.1
TSPAN4-208ENST00000409531 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.91■■□□□ 1.1
TSPAN4-208ENST00000409531 SPG7Q9UQ90 795 aa21.91■■□□□ 1.1
TSPAN4-208ENST00000409531 HMOX1P09601 288 aa21.9■■□□□ 1.1
TSPAN4-208ENST00000409531 PCDH11XQ9BZA7 1347 aa21.9■■□□□ 1.1
TSPAN4-208ENST00000409531 PCDH11YQ9BZA8 1340 aa21.9■■□□□ 1.1
TSPAN4-208ENST00000409531 NEFMP07197 916 aa21.89■■□□□ 1.1
TSPAN4-208ENST00000409531 RSPH6AQ9H0K4 717 aa21.88■■□□□ 1.09
TSPAN4-208ENST00000409531 PLEKHG2Q9H7P9 1386 aa21.88■■□□□ 1.09
TSPAN4-208ENST00000409531 KAT6BQ8WYB5 2073 aa21.88■■□□□ 1.09
TSPAN4-208ENST00000409531 PSDA5PKW4 1024 aaPredicted RBP21.87■■□□□ 1.09
TSPAN4-208ENST00000409531 CYP27B1O15528 508 aa21.87■■□□□ 1.09
TSPAN4-208ENST00000409531 PRIM1P49642 420 aaKnown RBP21.87■■□□□ 1.09
TSPAN4-208ENST00000409531 AEBP1Q8IUX7 1158 aa21.87■■□□□ 1.09
TSPAN4-208ENST00000409531 PRKAR2BP31323 418 aa21.85■■□□□ 1.09
TSPAN4-208ENST00000409531 PROM2Q8N271 834 aa21.85■■□□□ 1.09
TSPAN4-208ENST00000409531 SYTL4Q96C24 671 aaPredicted RBP21.85■■□□□ 1.09
TSPAN4-208ENST00000409531 MAPK8IP3Q9UPT6 1336 aa21.85■■□□□ 1.09
TSPAN4-208ENST00000409531 LRP5O75197 1615 aa21.85■■□□□ 1.09
TSPAN4-208ENST00000409531 RUNDC1Q96C34 613 aa21.84■■□□□ 1.09
TSPAN4-208ENST00000409531 NKX1-1Q15270 411 aaPredicted RBP21.83■■□□□ 1.09
TSPAN4-208ENST00000409531 PLEKHO1Q53GL0 409 aaPredicted RBP21.83■■□□□ 1.09
TSPAN4-208ENST00000409531 NBPF14Q5TI25 921 aa21.83■■□□□ 1.09
TSPAN4-208ENST00000409531 TXNRD1Q16881 649 aa21.82■■□□□ 1.08
TSPAN4-208ENST00000409531 AMOTQ4VCS5 1084 aa21.82■■□□□ 1.08
TSPAN4-208ENST00000409531 IFNL2Q8IZJ0 200 aa21.82■■□□□ 1.08
TSPAN4-208ENST00000409531 PLEKHF1Q96S99 279 aa21.82■■□□□ 1.08
TSPAN4-208ENST00000409531 SHANK3Q9BYB0 1731 aa21.82■■□□□ 1.08
TSPAN4-208ENST00000409531 NHSQ6T4R5 1651 aa21.82■■□□□ 1.08
TSPAN4-208ENST00000409531 PHKG2P15735 406 aa21.8■■□□□ 1.08
TSPAN4-208ENST00000409531 CCDC146Q8IYE0 955 aa21.8■■□□□ 1.08
TSPAN4-208ENST00000409531 PKD1L3Q7Z443 1732 aa21.8■■□□□ 1.08
TSPAN4-208ENST00000409531 R3HDM1Q15032 1099 aaKnown RBP21.79■■□□□ 1.08
TSPAN4-208ENST00000409531 MPRIPQ6WCQ1 1025 aa21.77■■□□□ 1.07
TSPAN4-208ENST00000409531 GAS2L2Q8NHY3 880 aa21.77■■□□□ 1.07
TSPAN4-208ENST00000409531 PHACTR3Q96KR7 559 aa21.77■■□□□ 1.07
TSPAN4-208ENST00000409531 RGPD3A6NKT7 1758 aaPredicted RBP21.77■■□□□ 1.07
TSPAN4-208ENST00000409531 RGPD4Q7Z3J3 1758 aa21.77■■□□□ 1.07
TSPAN4-208ENST00000409531 DLG5Q8TDM6 1919 aa21.76■■□□□ 1.07
TSPAN4-208ENST00000409531 HSP90AB1P08238 724 aaKnown RBP21.76■■□□□ 1.07
TSPAN4-208ENST00000409531 ZNF530Q6P9A1 599 aaPredicted RBP21.76■■□□□ 1.07
TSPAN4-208ENST00000409531 RREB1Q92766 1687 aa21.75■■□□□ 1.07
TSPAN4-208ENST00000409531 NGEFQ8N5V2 710 aa21.75■■□□□ 1.07
TSPAN4-208ENST00000409531 BTAF1O14981 1849 aa21.74■■□□□ 1.07
TSPAN4-208ENST00000409531 APAF1O14727 1248 aa21.74■■□□□ 1.07
TSPAN4-208ENST00000409531 NFE2L2Q16236 605 aa21.74■■□□□ 1.07
TSPAN4-208ENST00000409531 SLC27A3Q5K4L6 730 aa21.74■■□□□ 1.07
TSPAN4-208ENST00000409531 DOT1LQ8TEK3 1739 aa21.73■■□□□ 1.07
TSPAN4-208ENST00000409531 MTHFSDQ2M296 383 aaKnown RBP21.73■■□□□ 1.07
TSPAN4-208ENST00000409531 C1orf141Q5JVX7 400 aa21.73■■□□□ 1.07
TSPAN4-208ENST00000409531 DCAF5Q96JK2 942 aa21.73■■□□□ 1.07
TSPAN4-208ENST00000409531 TMPOP42166 694 aaKnown RBP21.72■■□□□ 1.07
TSPAN4-208ENST00000409531 NCBP3Q53F19 620 aaKnown RBP21.72■■□□□ 1.07
TSPAN4-208ENST00000409531 PIGBQ92521 554 aa21.72■■□□□ 1.07
TSPAN4-208ENST00000409531 LRRC4BQ9NT99 713 aa21.72■■□□□ 1.07
TSPAN4-208ENST00000409531 NUP188Q5SRE5 1749 aa21.71■■□□□ 1.07
TSPAN4-208ENST00000409531 ERVV-2B6SEH9 535 aa21.71■■□□□ 1.07
TSPAN4-208ENST00000409531 TMOD3Q9NYL9 352 aa21.71■■□□□ 1.07
TSPAN4-208ENST00000409531 LMOD3Q0VAK6 560 aa21.7■■□□□ 1.06
TSPAN4-208ENST00000409531 ANO8Q9HCE9 1232 aaPredicted RBP21.7■■□□□ 1.06
TSPAN4-208ENST00000409531 STK32BQ9NY57 414 aa21.7■■□□□ 1.06
TSPAN4-208ENST00000409531 VIRMAQ69YN4 1812 aaKnown RBP21.69■■□□□ 1.06
TSPAN4-208ENST00000409531 RIPK4P57078 832 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms