RNA–Protein interactions for RNA: ENST00000409031.5

SMPD4-202, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD4, Length 4,896 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-202ENST00000409031 GDPD2Q9HCC8 539 aa20.82■□□□□ 0.92
SMPD4-202ENST00000409031 CTAGE5O15320 804 aa20.82■□□□□ 0.92
SMPD4-202ENST00000409031 MARCH6O60337 910 aa20.81■□□□□ 0.92
SMPD4-202ENST00000409031 TMEM132EQ6IEE7 984 aa20.81■□□□□ 0.92
SMPD4-202ENST00000409031 TXLNBQ8N3L3 684 aa20.81■□□□□ 0.92
SMPD4-202ENST00000409031 SEC24BO95487 1268 aa20.81■□□□□ 0.92
SMPD4-202ENST00000409031 CCDC171Q6TFL3 1326 aa20.81■□□□□ 0.92
SMPD4-202ENST00000409031 STK3Q13188 491 aa20.81■□□□□ 0.92
SMPD4-202ENST00000409031 RRP12Q5JTH9 1297 aaKnown RBP20.81■□□□□ 0.92
SMPD4-202ENST00000409031 ZNF830Q96NB3 372 aaPredicted RBP20.81■□□□□ 0.92
SMPD4-202ENST00000409031 PTPN23Q9H3S7 1636 aa20.81■□□□□ 0.92
SMPD4-202ENST00000409031 CSB-PGBD3P0DP91 1061 aa20.81■□□□□ 0.92
SMPD4-202ENST00000409031 NUCB1Q02818 461 aa20.81■□□□□ 0.92
SMPD4-202ENST00000409031 OGFRQ9NZT2 677 aa20.81■□□□□ 0.92
SMPD4-202ENST00000409031 FERMT3Q86UX7 667 aa20.8■□□□□ 0.92
SMPD4-202ENST00000409031 LIMCH1Q9UPQ0 1083 aa20.8■□□□□ 0.92
SMPD4-202ENST00000409031 TTC12Q9H892 705 aaPredicted RBP20.79■□□□□ 0.92
SMPD4-202ENST00000409031 TRMT1Q9NXH9 659 aaKnown RBP20.79■□□□□ 0.92
SMPD4-202ENST00000409031 CCDC83Q8IWF9 413 aa20.79■□□□□ 0.92
SMPD4-202ENST00000409031 CASTP20810 708 aaKnown RBP20.79■□□□□ 0.92
SMPD4-202ENST00000409031 KRT32Q14532 448 aa20.79■□□□□ 0.92
SMPD4-202ENST00000409031 GIMAP7Q8NHV1 300 aa20.79■□□□□ 0.92
SMPD4-202ENST00000409031 KDM2BQ8NHM5 1336 aa20.78■□□□□ 0.92
SMPD4-202ENST00000409031 NUTM2FA1L443 756 aa20.78■□□□□ 0.92
SMPD4-202ENST00000409031 ZNF165P49910 485 aa20.78■□□□□ 0.92
SMPD4-202ENST00000409031 CFAP100Q494V2 611 aa20.78■□□□□ 0.92
SMPD4-202ENST00000409031 JAKMIP3Q5VZ66 844 aa20.78■□□□□ 0.92
SMPD4-202ENST00000409031 MX1P20591 662 aa20.78■□□□□ 0.92
SMPD4-202ENST00000409031 PARD3Q8TEW0 1356 aa20.77■□□□□ 0.92
SMPD4-202ENST00000409031 ERICH2A1L162 156 aa20.77■□□□□ 0.92
SMPD4-202ENST00000409031 GOLGA6L10A6NI86 522 aa20.77■□□□□ 0.92
SMPD4-202ENST00000409031 STX6O43752 255 aa20.77■□□□□ 0.92
SMPD4-202ENST00000409031 ZNHIT6Q9NWK9 470 aaKnown RBP20.77■□□□□ 0.92
SMPD4-202ENST00000409031 IQCEQ6IPM2 695 aa20.77■□□□□ 0.92
SMPD4-202ENST00000409031 CRACR2AQ9BSW2 395 aa20.77■□□□□ 0.92
SMPD4-202ENST00000409031 BRPF1P55201 1214 aaPredicted RBP20.76■□□□□ 0.91
SMPD4-202ENST00000409031 SNW1Q13573 536 aaKnown RBP20.76■□□□□ 0.91
SMPD4-202ENST00000409031 CWC27Q6UX04 472 aaKnown RBP20.76■□□□□ 0.91
SMPD4-202ENST00000409031 CKAP2LQ8IYA6 745 aa20.76■□□□□ 0.91
SMPD4-202ENST00000409031 SHTN1A0MZ66 631 aa20.76■□□□□ 0.91
SMPD4-202ENST00000409031 PCF11O94913 1555 aaKnown RBP20.76■□□□□ 0.91
SMPD4-202ENST00000409031 ARHGAP29Q52LW3 1261 aa20.76■□□□□ 0.91
SMPD4-202ENST00000409031 XBP1P17861 261 aa20.76■□□□□ 0.91
SMPD4-202ENST00000409031 GAS2L2Q8NHY3 880 aa20.76■□□□□ 0.91
SMPD4-202ENST00000409031 MYO6Q9UM54 1294 aa20.76■□□□□ 0.91
SMPD4-202ENST00000409031 NFE2L2Q16236 605 aa20.75■□□□□ 0.91
SMPD4-202ENST00000409031 MAP9Q49MG5 647 aa20.75■□□□□ 0.91
SMPD4-202ENST00000409031 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.75■□□□□ 0.914e-7■□□□□ 10.9
SMPD4-202ENST00000409031 TMX3Q96JJ7 454 aa20.75■□□□□ 0.91
SMPD4-202ENST00000409031 MYRIPQ8NFW9 859 aa20.74■□□□□ 0.91
SMPD4-202ENST00000409031 TROQ12816 1431 aaPredicted RBP20.74■□□□□ 0.91
SMPD4-202ENST00000409031 FAM200AQ8TCP9 573 aa20.74■□□□□ 0.91
SMPD4-202ENST00000409031 NSD3Q9BZ95 1437 aa20.74■□□□□ 0.91
SMPD4-202ENST00000409031 GOLGA6L7A0A1B0GV03 622 aa20.74■□□□□ 0.91
SMPD4-202ENST00000409031 POTEB2H3BUK9 544 aa20.74■□□□□ 0.91
SMPD4-202ENST00000409031 ZNF397Q8NF99 534 aaPredicted RBP20.74■□□□□ 0.91
SMPD4-202ENST00000409031 EXOC6BQ9Y2D4 811 aa20.74■□□□□ 0.91
SMPD4-202ENST00000409031 CASQ1P31415 396 aa20.73■□□□□ 0.91
SMPD4-202ENST00000409031 WASHC4Q2M389 1173 aa20.73■□□□□ 0.91
SMPD4-202ENST00000409031 TTC22Q5TAA0 569 aa20.73■□□□□ 0.91
SMPD4-202ENST00000409031 NEUROD6Q96NK8 337 aa20.73■□□□□ 0.91
SMPD4-202ENST00000409031 ZNF445P59923 1031 aa20.73■□□□□ 0.91
SMPD4-202ENST00000409031 CCDC186Q7Z3E2 898 aa20.73■□□□□ 0.91
SMPD4-202ENST00000409031 MCM3P25205 808 aa20.72■□□□□ 0.91
SMPD4-202ENST00000409031 LMAN1P49257 510 aa20.72■□□□□ 0.91
SMPD4-202ENST00000409031 BRMS1Q9HCU9 246 aa20.72■□□□□ 0.91
SMPD4-202ENST00000409031 EPB41L2O43491 1005 aaKnown RBP20.72■□□□□ 0.91
SMPD4-202ENST00000409031 MAP4K4O95819 1239 aaPredicted RBP20.72■□□□□ 0.91
SMPD4-202ENST00000409031 GIMAP6Q6P9H5 292 aa20.72■□□□□ 0.91
SMPD4-202ENST00000409031 IL1RAPL2Q9NP60 686 aa20.72■□□□□ 0.91
SMPD4-202ENST00000409031 SMARCA5O60264 1052 aaPredicted RBP20.72■□□□□ 0.91
SMPD4-202ENST00000409031 GTF2A1P52655 376 aaPredicted RBP20.72■□□□□ 0.91
SMPD4-202ENST00000409031 GOLGA6L9A6NEM1 432 aa20.71■□□□□ 0.91
SMPD4-202ENST00000409031 TUBB4AP04350 444 aa20.71■□□□□ 0.91
SMPD4-202ENST00000409031 CTR9Q6PD62 1173 aa20.71■□□□□ 0.91
SMPD4-202ENST00000409031 HECW1Q76N89 1606 aa20.71■□□□□ 0.91
SMPD4-202ENST00000409031 IRX3P78415 501 aaPredicted RBP20.71■□□□□ 0.91
SMPD4-202ENST00000409031 MAGEC2Q9UBF1 373 aaPredicted RBP20.71■□□□□ 0.91
SMPD4-202ENST00000409031 KIF5CO60282 957 aa20.7■□□□□ 0.9
SMPD4-202ENST00000409031 SLU7O95391 586 aaKnown RBP20.7■□□□□ 0.9
SMPD4-202ENST00000409031 GABPB1Q06547 395 aaPredicted RBP20.7■□□□□ 0.9
SMPD4-202ENST00000409031 RBSNQ9H1K0 784 aa20.7■□□□□ 0.9
SMPD4-202ENST00000409031 IVLP07476 585 aa20.7■□□□□ 0.9
SMPD4-202ENST00000409031 CCDC181Q5TID7 509 aa20.7■□□□□ 0.9
SMPD4-202ENST00000409031 IGSF3O75054 1194 aa20.7■□□□□ 0.9
SMPD4-202ENST00000409031 TOP1P11387 765 aaKnown RBP20.7■□□□□ 0.9
SMPD4-202ENST00000409031 FAM193AP78312 1265 aa20.7■□□□□ 0.9
SMPD4-202ENST00000409031 STX1AQ16623 288 aa20.7■□□□□ 0.9
SMPD4-202ENST00000409031 DDX11Q96FC9 970 aa20.7■□□□□ 0.9
SMPD4-202ENST00000409031 CCDC148Q8NFR7 591 aa20.7■□□□□ 0.9
SMPD4-202ENST00000409031 RIC3Q7Z5B4 369 aa20.69■□□□□ 0.9
SMPD4-202ENST00000409031 GLRX3O76003 335 aaKnown RBP20.69■□□□□ 0.9
SMPD4-202ENST00000409031 ZSCAN22P10073 491 aaPredicted RBP20.69■□□□□ 0.9
SMPD4-202ENST00000409031 KIF4BQ2VIQ3 1234 aa20.69■□□□□ 0.9
SMPD4-202ENST00000409031 USP48Q86UV5 1035 aa20.69■□□□□ 0.9
SMPD4-202ENST00000409031 CCDC150Q8NCX0 1101 aa20.69■□□□□ 0.9
SMPD4-202ENST00000409031 RBM42Q9BTD8 480 aaKnown RBP20.69■□□□□ 0.9
SMPD4-202ENST00000409031 CENPHQ9H3R5 247 aa20.69■□□□□ 0.9
SMPD4-202ENST00000409031 PRDM2Q13029 1718 aa20.69■□□□□ 0.9
SMPD4-202ENST00000409031 GPATCH11Q8N954 259 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms