RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 KIF24Q5T7B8 1368 aa26.66■■□□□ 1.86
SMARCB1-204ENST00000407422 ZCRB1Q8TBF4 217 aaKnown RBP26.65■■□□□ 1.86
SMARCB1-204ENST00000407422 PPM1GO15355 546 aaPredicted RBP26.64■■□□□ 1.85
SMARCB1-204ENST00000407422 ANKRD26Q9UPS8 1709 aa26.64■■□□□ 1.85
SMARCB1-204ENST00000407422 PANK3Q9H999 370 aa26.63■■□□□ 1.85
SMARCB1-204ENST00000407422 DOT1LQ8TEK3 1739 aa26.61■■□□□ 1.85
SMARCB1-204ENST00000407422 RAPGEF4Q8WZA2 1011 aa26.6■■□□□ 1.85
SMARCB1-204ENST00000407422 PDGFDQ9GZP0 370 aaPredicted RBP26.6■■□□□ 1.85
SMARCB1-204ENST00000407422 CASZ1Q86V15 1759 aa26.58■■□□□ 1.85
SMARCB1-204ENST00000407422 TNNT2P45379 298 aaPredicted RBP26.58■■□□□ 1.85
SMARCB1-204ENST00000407422 POLKQ9UBT6 870 aa26.58■■□□□ 1.85
SMARCB1-204ENST00000407422 PRIM1P49642 420 aaKnown RBP26.57■■□□□ 1.84
SMARCB1-204ENST00000407422 SYTL4Q96C24 671 aaPredicted RBP26.57■■□□□ 1.84
SMARCB1-204ENST00000407422 WASHC2AQ641Q2 1341 aa26.57■■□□□ 1.84
SMARCB1-204ENST00000407422 TATP17735 454 aaPredicted RBP26.57■■□□□ 1.84
SMARCB1-204ENST00000407422 STK32BQ9NY57 414 aa26.56■■□□□ 1.84
SMARCB1-204ENST00000407422 SLC15A2Q16348 729 aa26.55■■□□□ 1.84
SMARCB1-204ENST00000407422 SPON1Q9HCB6 807 aa26.54■■□□□ 1.84
SMARCB1-204ENST00000407422 LRRC4BQ9NT99 713 aa26.54■■□□□ 1.84
SMARCB1-204ENST00000407422 NSD2O96028 1365 aa26.53■■□□□ 1.84
SMARCB1-204ENST00000407422 PAPPAQ13219 1627 aa26.53■■□□□ 1.84
SMARCB1-204ENST00000407422 NCAPD2Q15021 1401 aa26.52■■□□□ 1.84
SMARCB1-204ENST00000407422 EYA1Q99502 592 aa26.5■■□□□ 1.83
SMARCB1-204ENST00000407422 ZBTB7AO95365 584 aa26.5■■□□□ 1.83
SMARCB1-204ENST00000407422 PCDH11XQ9BZA7 1347 aa26.49■■□□□ 1.83
SMARCB1-204ENST00000407422 PCDH11YQ9BZA8 1340 aa26.49■■□□□ 1.83
SMARCB1-204ENST00000407422 PKD1L3Q7Z443 1732 aa26.49■■□□□ 1.83
SMARCB1-204ENST00000407422 KIF7Q2M1P5 1343 aa26.49■■□□□ 1.83
SMARCB1-204ENST00000407422 CYP27B1O15528 508 aa26.48■■□□□ 1.83
SMARCB1-204ENST00000407422 LY75O60449 1722 aa26.47■■□□□ 1.83
SMARCB1-204ENST00000407422 KCNQ4P56696 695 aa26.47■■□□□ 1.83
SMARCB1-204ENST00000407422 ZNF827Q17R98 1081 aa26.47■■□□□ 1.83
SMARCB1-204ENST00000407422 EIF4A2Q14240 407 aaKnown RBP26.47■■□□□ 1.83
SMARCB1-204ENST00000407422 SLC27A3Q5K4L6 730 aa26.46■■□□□ 1.83
SMARCB1-204ENST00000407422 PPP1R1BQ9UD71 204 aaPredicted RBP26.46■■□□□ 1.83
SMARCB1-204ENST00000407422 KNSTRNQ9Y448 316 aa26.45■■□□□ 1.82
SMARCB1-204ENST00000407422 ATF5Q9Y2D1 282 aaPredicted RBP26.44■■□□□ 1.82
SMARCB1-204ENST00000407422 TOGARAM1Q9Y4F4 1720 aa26.44■■□□□ 1.82
SMARCB1-204ENST00000407422 MORC1Q86VD1 984 aa26.43■■□□□ 1.82
SMARCB1-204ENST00000407422 ITGB4P16144 1822 aa26.42■■□□□ 1.82
SMARCB1-204ENST00000407422 AKT1S1Q96B36 256 aa26.42■■□□□ 1.82
SMARCB1-204ENST00000407422 PTGER2P43116 358 aa26.41■■□□□ 1.82
SMARCB1-204ENST00000407422 SPG7Q9UQ90 795 aa26.4■■□□□ 1.82
SMARCB1-204ENST00000407422 AMER1Q5JTC6 1135 aaPredicted RBP26.39■■□□□ 1.82
SMARCB1-204ENST00000407422 MPRIPQ6WCQ1 1025 aa26.39■■□□□ 1.82
SMARCB1-204ENST00000407422 TUBGCP6Q96RT7 1819 aa26.39■■□□□ 1.81
SMARCB1-204ENST00000407422 CCNL1Q9UK58 526 aaPredicted RBP26.39■■□□□ 1.81
SMARCB1-204ENST00000407422 MTFR1LQ9H019 292 aa26.38■■□□□ 1.81
SMARCB1-204ENST00000407422 IGSF1Q8N6C5 1336 aa26.36■■□□□ 1.81
SMARCB1-204ENST00000407422 QSER1Q2KHR3 1735 aa26.36■■□□□ 1.81
SMARCB1-204ENST00000407422 NKX1-1Q15270 411 aaPredicted RBP26.36■■□□□ 1.81
SMARCB1-204ENST00000407422 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.36■■□□□ 1.81
SMARCB1-204ENST00000407422 SGIP1Q9BQI5 828 aa26.34■■□□□ 1.81
SMARCB1-204ENST00000407422 PNPLA7Q6ZV29 1317 aa26.33■■□□□ 1.81
SMARCB1-204ENST00000407422 PER1O15534 1290 aaPredicted RBP26.33■■□□□ 1.81
SMARCB1-204ENST00000407422 TFCP2L1Q9NZI6 479 aa26.33■■□□□ 1.81
SMARCB1-204ENST00000407422 UTRNP46939 3433 aa26.33■■□□□ 1.8
SMARCB1-204ENST00000407422 PHKG2P15735 406 aa26.32■■□□□ 1.8
SMARCB1-204ENST00000407422 PIGBQ92521 554 aa26.32■■□□□ 1.8
SMARCB1-204ENST00000407422 PALLDQ8WX93 1383 aa26.32■■□□□ 1.8
SMARCB1-204ENST00000407422 C5P01031 1676 aa26.31■■□□□ 1.8
SMARCB1-204ENST00000407422 IFNL2Q8IZJ0 200 aa26.31■■□□□ 1.8
SMARCB1-204ENST00000407422 TAF1LQ8IZX4 1826 aa26.3■■□□□ 1.8
SMARCB1-204ENST00000407422 AEBP1Q8IUX7 1158 aa26.29■■□□□ 1.8
SMARCB1-204ENST00000407422 CC2D1BQ5T0F9 858 aaKnown RBP26.28■■□□□ 1.8
SMARCB1-204ENST00000407422 PLEKHG2Q9H7P9 1386 aa26.26■■□□□ 1.8
SMARCB1-204ENST00000407422 IL13P35225 146 aa26.26■■□□□ 1.79
SMARCB1-204ENST00000407422 SMARCC1Q92922 1105 aaPredicted RBP26.26■■□□□ 1.79
SMARCB1-204ENST00000407422 FHDC1Q9C0D6 1143 aaPredicted RBP26.26■■□□□ 1.79
SMARCB1-204ENST00000407422 SLC16A10Q8TF71 515 aa26.25■■□□□ 1.79
SMARCB1-204ENST00000407422 TMOD3Q9NYL9 352 aa26.25■■□□□ 1.79
SMARCB1-204ENST00000407422 MTHFSP49914 203 aa26.25■■□□□ 1.79
SMARCB1-204ENST00000407422 PLEKHO1Q53GL0 409 aaPredicted RBP26.24■■□□□ 1.79
SMARCB1-204ENST00000407422 SULT6B1Q6IMI4 303 aa26.24■■□□□ 1.79
SMARCB1-204ENST00000407422 ARXQ96QS3 562 aa26.24■■□□□ 1.79
SMARCB1-204ENST00000407422 COL24A1Q17RW2 1714 aa26.24■■□□□ 1.79
SMARCB1-204ENST00000407422 COL23A1Q86Y22 540 aaPredicted RBP26.23■■□□□ 1.79
SMARCB1-204ENST00000407422 SYT17Q9BSW7 474 aa26.23■■□□□ 1.79
SMARCB1-204ENST00000407422 ASAP1Q9ULH1 1129 aa26.23■■□□□ 1.79
SMARCB1-204ENST00000407422 CNGB1Q14028 1251 aaPredicted RBP26.22■■□□□ 1.79
SMARCB1-204ENST00000407422 GOLGB1Q14789 3259 aaKnown RBP26.22■■□□□ 1.79
SMARCB1-204ENST00000407422 ZNF530Q6P9A1 599 aaPredicted RBP26.21■■□□□ 1.79
SMARCB1-204ENST00000407422 C4BP0C0L5 1744 aa26.21■■□□□ 1.79
SMARCB1-204ENST00000407422 KDRP35968 1356 aa26.21■■□□□ 1.79
SMARCB1-204ENST00000407422 MSH5O43196 834 aa26.21■■□□□ 1.79
SMARCB1-204ENST00000407422 AMOTQ4VCS5 1084 aa26.2■■□□□ 1.78
SMARCB1-204ENST00000407422 LOC102724428A0A0B4J2F2 783 aa26.19■■□□□ 1.78
SMARCB1-204ENST00000407422 SIK1P57059 783 aa26.19■■□□□ 1.78
SMARCB1-204ENST00000407422 DCAF5Q96JK2 942 aa26.18■■□□□ 1.78
SMARCB1-204ENST00000407422 ATG3Q9NT62 314 aa26.18■■□□□ 1.78
SMARCB1-204ENST00000407422 KDM6AO15550 1401 aaPredicted RBP26.18■■□□□ 1.78
SMARCB1-204ENST00000407422 HSP90AB1P08238 724 aaKnown RBP26.17■■□□□ 1.78
SMARCB1-204ENST00000407422 POLD1P28340 1107 aa26.17■■□□□ 1.78
SMARCB1-204ENST00000407422 AMIGO3Q86WK7 504 aa26.17■■□□□ 1.78
SMARCB1-204ENST00000407422 NPC1L1Q9UHC9 1359 aa26.16■■□□□ 1.78
SMARCB1-204ENST00000407422 UBR3Q6ZT12 1888 aa26.16■■□□□ 1.78
SMARCB1-204ENST00000407422 DCAF8L1A6NGE4 600 aa26.16■■□□□ 1.78
SMARCB1-204ENST00000407422 ERVV-2B6SEH9 535 aa26.16■■□□□ 1.78
SMARCB1-204ENST00000407422 SMIM5Q71RC9 77 aa26.15■■□□□ 1.78
SMARCB1-204ENST00000407422 LINC00116Q8NCU8 138 aa26.15■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms