RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 G2E3Q7L622 706 aa25.84■■□□□ 1.73
CTCF-202ENST00000401394 PPP1R9BQ96SB3 815 aa25.84■■□□□ 1.73
CTCF-202ENST00000401394 TMEM63CQ9P1W3 806 aa25.83■■□□□ 1.73
CTCF-202ENST00000401394 MSH6P52701 1360 aa25.83■■□□□ 1.73
CTCF-202ENST00000401394 ZSCAN30Q86W11 494 aa25.83■■□□□ 1.73
CTCF-202ENST00000401394 NECTIN2Q92692 538 aa25.83■■□□□ 1.73
CTCF-202ENST00000401394 API5Q9BZZ5 524 aaKnown RBP25.83■■□□□ 1.73
CTCF-202ENST00000401394 ISY1Q9ULR0 285 aaKnown RBP25.83■■□□□ 1.73
CTCF-202ENST00000401394 FOXO3O43524 673 aa25.83■■□□□ 1.72
CTCF-202ENST00000401394 GDPD2Q9HCC8 539 aa25.83■■□□□ 1.72
CTCF-202ENST00000401394 R3HCC1Q9Y3T6 440 aaKnown RBP25.83■■□□□ 1.72
CTCF-202ENST00000401394 CYP2E1P05181 493 aaPredicted RBP25.82■■□□□ 1.72
CTCF-202ENST00000401394 EIF2AK3Q9NZJ5 1116 aaKnown RBP25.82■■□□□ 1.72
CTCF-202ENST00000401394 EXOC6BQ9Y2D4 811 aa25.82■■□□□ 1.72
CTCF-202ENST00000401394 MLECQ14165 292 aa25.82■■□□□ 1.72
CTCF-202ENST00000401394 ARHGEF40Q8TER5 1519 aa25.81■■□□□ 1.72
CTCF-202ENST00000401394 ANKRD44Q8N8A2 993 aa25.8■■□□□ 1.72
CTCF-202ENST00000401394 RRP9O43818 475 aaKnown RBP25.8■■□□□ 1.72
CTCF-202ENST00000401394 SLC52A1Q9NWF4 448 aa25.8■■□□□ 1.72
CTCF-202ENST00000401394 PALD1Q9ULE6 856 aa25.8■■□□□ 1.72
CTCF-202ENST00000401394 MAP2P11137 1827 aaKnown RBP25.79■■□□□ 1.72
CTCF-202ENST00000401394 INTS3Q68E01 1043 aaKnown RBP25.79■■□□□ 1.72
CTCF-202ENST00000401394 RIMS2Q9UQ26 1411 aa25.79■■□□□ 1.72
CTCF-202ENST00000401394 SLC4A2P04920 1241 aa25.79■■□□□ 1.72
CTCF-202ENST00000401394 MSNP26038 577 aaKnown RBP25.79■■□□□ 1.72
CTCF-202ENST00000401394 NEK4P51957 841 aa25.79■■□□□ 1.72
CTCF-202ENST00000401394 ZNF428Q96B54 188 aa25.79■■□□□ 1.72
CTCF-202ENST00000401394 ATP10DQ9P241 1426 aa25.78■■□□□ 1.72
CTCF-202ENST00000401394 JARID2Q92833 1246 aaPredicted RBP25.78■■□□□ 1.72
CTCF-202ENST00000401394 ANP32BQ92688 251 aaKnown RBP25.77■■□□□ 1.72
CTCF-202ENST00000401394 LARP6Q9BRS8 491 aaKnown RBP25.77■■□□□ 1.72
CTCF-202ENST00000401394 CLEC17AQ6ZS10 378 aa25.77■■□□□ 1.72
CTCF-202ENST00000401394 RIMBP3CA6NJZ7 1639 aa25.75■■□□□ 1.71
CTCF-202ENST00000401394 RIMBP3BA6NNM3 1639 aa25.75■■□□□ 1.71
CTCF-202ENST00000401394 RIMBP3Q9UFD9 1639 aa25.75■■□□□ 1.71
CTCF-202ENST00000401394 ZNF445P59923 1031 aa25.75■■□□□ 1.71
CTCF-202ENST00000401394 UPF3BQ9BZI7 483 aaKnown RBP25.75■■□□□ 1.71
CTCF-202ENST00000401394 FAM13BQ9NYF5 915 aa25.75■■□□□ 1.71
CTCF-202ENST00000401394 RGS12O14924 1447 aa25.75■■□□□ 1.71
CTCF-202ENST00000401394 ZFYVE9O95405 1425 aa25.75■■□□□ 1.71
CTCF-202ENST00000401394 NUCB2P80303 420 aa25.74■■□□□ 1.71
CTCF-202ENST00000401394 HSP90AB2PQ58FF8 381 aa25.74■■□□□ 1.71
CTCF-202ENST00000401394 COG3Q96JB2 828 aa25.74■■□□□ 1.71
CTCF-202ENST00000401394 RTL1A6NKG5 1358 aa25.74■■□□□ 1.71
CTCF-202ENST00000401394 EIF4A2Q14240 407 aaKnown RBP25.73■■□□□ 1.71
CTCF-202ENST00000401394 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.73■■□□□ 1.71
CTCF-202ENST00000401394 PKNOX2Q96KN3 472 aa25.73■■□□□ 1.71
CTCF-202ENST00000401394 RICTORQ6R327 1708 aa25.73■■□□□ 1.71
CTCF-202ENST00000401394 IL25Q9H293 177 aa25.73■■□□□ 1.71
CTCF-202ENST00000401394 CHMP4BQ9H444 224 aaKnown RBP25.73■■□□□ 1.71
CTCF-202ENST00000401394 NUDT16Q96DE0 195 aaKnown RBP25.72■■□□□ 1.71
CTCF-202ENST00000401394 TMX3Q96JJ7 454 aa25.72■■□□□ 1.71
CTCF-202ENST00000401394 DIP2CQ9Y2E4 1556 aa25.72■■□□□ 1.71
CTCF-202ENST00000401394 ST18O60284 1047 aa25.71■■□□□ 1.71
CTCF-202ENST00000401394 OFD1O75665 1012 aa25.71■■□□□ 1.71
CTCF-202ENST00000401394 MAP4K4O95819 1239 aaPredicted RBP25.71■■□□□ 1.71
CTCF-202ENST00000401394 UNC5CLQ8IV45 518 aa25.71■■□□□ 1.71
CTCF-202ENST00000401394 RILPL2Q969X0 211 aa25.71■■□□□ 1.71
CTCF-202ENST00000401394 CPS1P31327 1500 aa25.7■■□□□ 1.7
CTCF-202ENST00000401394 ALKQ9UM73 1620 aa25.69■■□□□ 1.7
CTCF-202ENST00000401394 WASLO00401 505 aaPredicted RBP25.69■■□□□ 1.7
CTCF-202ENST00000401394 GADD45BO75293 160 aaPredicted RBP25.69■■□□□ 1.7
CTCF-202ENST00000401394 PDE1AP54750 535 aa25.69■■□□□ 1.7
CTCF-202ENST00000401394 GLIPR1L2Q4G1C9 344 aa25.68■■□□□ 1.7
CTCF-202ENST00000401394 ZNF830Q96NB3 372 aaPredicted RBP25.68■■□□□ 1.7
CTCF-202ENST00000401394 ERC2O15083 957 aa25.68■■□□□ 1.7
CTCF-202ENST00000401394 ANKRD26Q9UPS8 1709 aa25.67■■□□□ 1.7
CTCF-202ENST00000401394 DLG5Q8TDM6 1919 aa25.67■■□□□ 1.7
CTCF-202ENST00000401394 PNMA6EA0A0J9YXQ4 647 aa25.67■■□□□ 1.7
CTCF-202ENST00000401394 PTMSP20962 102 aa25.67■■□□□ 1.7
CTCF-202ENST00000401394 TRIM6-TRIM34B2RNG4 842 aa25.66■■□□□ 1.7
CTCF-202ENST00000401394 RPAP2Q8IXW5 612 aaPredicted RBP25.66■■□□□ 1.7
CTCF-202ENST00000401394 ANO2Q9NQ90 1003 aa25.66■■□□□ 1.7
CTCF-202ENST00000401394 CHL1O00533 1208 aa25.66■■□□□ 1.7
CTCF-202ENST00000401394 TSC1Q92574 1164 aa25.66■■□□□ 1.7
CTCF-202ENST00000401394 TMEM131LA2VDJ0 1609 aa25.65■■□□□ 1.7
CTCF-202ENST00000401394 FAM69CQ0P6D2 419 aa25.65■■□□□ 1.7
CTCF-202ENST00000401394 KIF20BQ96Q89 1820 aa25.64■■□□□ 1.7
CTCF-202ENST00000401394 METP08581 1390 aa25.64■■□□□ 1.7
CTCF-202ENST00000401394 CASC1Q6TDU7 716 aa25.64■■□□□ 1.7
CTCF-202ENST00000401394 TPM2P07951 284 aa25.64■■□□□ 1.69
CTCF-202ENST00000401394 C17orf53Q8N3J3 647 aaPredicted RBP25.64■■□□□ 1.69
CTCF-202ENST00000401394 IL1RAPL2Q9NP60 686 aa25.64■■□□□ 1.69
CTCF-202ENST00000401394 PRR36Q9H6K5 1346 aa25.63■■□□□ 1.69
CTCF-202ENST00000401394 LMOD3Q0VAK6 560 aa25.63■■□□□ 1.69
CTCF-202ENST00000401394 PDLIM2Q96JY6 352 aa25.63■■□□□ 1.69
CTCF-202ENST00000401394 NOL7Q9UMY1 257 aaKnown RBP25.63■■□□□ 1.69
CTCF-202ENST00000401394 CDC42BPGQ6DT37 1551 aa25.63■■□□□ 1.69
CTCF-202ENST00000401394 REC8O95072 547 aa25.62■■□□□ 1.69
CTCF-202ENST00000401394 IBTKQ9P2D0 1353 aaPredicted RBP25.62■■□□□ 1.69
CTCF-202ENST00000401394 LRSAM1Q6UWE0 723 aa25.62■■□□□ 1.69
CTCF-202ENST00000401394 DIP2BQ9P265 1576 aa25.6■■□□□ 1.69
CTCF-202ENST00000401394 UQCRHLA0A096LP55 91 aa25.6■■□□□ 1.69
CTCF-202ENST00000401394 FAM177BA6PVY3 158 aa25.6■■□□□ 1.69
CTCF-202ENST00000401394 UQCRHP07919 91 aa25.6■■□□□ 1.69
CTCF-202ENST00000401394 CWC22Q9HCG8 908 aaKnown RBP25.6■■□□□ 1.69
CTCF-202ENST00000401394 TSPYL4Q9UJ04 414 aa25.59■■□□□ 1.69
CTCF-202ENST00000401394 CCDC61Q9Y6R9 512 aa25.59■■□□□ 1.69
CTCF-202ENST00000401394 NUTM1Q86Y26 1132 aa25.58■■□□□ 1.69
CTCF-202ENST00000401394 ESYT1Q9BSJ8 1104 aa25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms