RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 POLR3GLQ9BT43 218 aa18.58■□□□□ 0.56
VCX3A-202ENST00000398729 CARD14Q9BXL6 1004 aa18.58■□□□□ 0.56
VCX3A-202ENST00000398729 HSPA5P11021 654 aaKnown RBP18.57■□□□□ 0.56
VCX3A-202ENST00000398729 ZNF827Q17R98 1081 aa18.57■□□□□ 0.56
VCX3A-202ENST00000398729 KAT6BQ8WYB5 2073 aa18.54■□□□□ 0.56
VCX3A-202ENST00000398729 C1QTNF8P60827 252 aa18.54■□□□□ 0.56
VCX3A-202ENST00000398729 CGNL1Q0VF96 1302 aa18.53■□□□□ 0.56
VCX3A-202ENST00000398729 AKT1S1Q96B36 256 aa18.53■□□□□ 0.56
VCX3A-202ENST00000398729 MAP3K5Q99683 1374 aa18.53■□□□□ 0.56
VCX3A-202ENST00000398729 CHD4Q14839 1912 aa18.53■□□□□ 0.56
VCX3A-202ENST00000398729 SMG6Q86US8 1419 aaKnown RBP18.52■□□□□ 0.56
VCX3A-202ENST00000398729 NHSQ6T4R5 1651 aa18.52■□□□□ 0.56
VCX3A-202ENST00000398729 RGPD2P0DJD1 1756 aa18.52■□□□□ 0.55
VCX3A-202ENST00000398729 KIF24Q5T7B8 1368 aa18.52■□□□□ 0.55
VCX3A-202ENST00000398729 PAPPAQ13219 1627 aa18.52■□□□□ 0.55
VCX3A-202ENST00000398729 CEP350Q5VT06 3117 aa18.51■□□□□ 0.55
VCX3A-202ENST00000398729 FLT4P35916 1363 aa18.51■□□□□ 0.55
VCX3A-202ENST00000398729 INSRP06213 1382 aa18.5■□□□□ 0.55
VCX3A-202ENST00000398729 SENP3-EIF4A1A0A087X0R7 540 aa18.49■□□□□ 0.55
VCX3A-202ENST00000398729 GPR162Q16538 588 aa18.49■□□□□ 0.55
VCX3A-202ENST00000398729 HSP90AB2PQ58FF8 381 aa18.49■□□□□ 0.55
VCX3A-202ENST00000398729 NBPF6Q5VWK0 638 aa18.49■□□□□ 0.55
VCX3A-202ENST00000398729 DDX54Q8TDD1 881 aaKnown RBP18.49■□□□□ 0.55
VCX3A-202ENST00000398729 NBPF4Q96M43 638 aa18.49■□□□□ 0.55
VCX3A-202ENST00000398729 KCNQ4P56696 695 aa18.48■□□□□ 0.55
VCX3A-202ENST00000398729 BTAF1O14981 1849 aa18.48■□□□□ 0.55
VCX3A-202ENST00000398729 SLC16A10Q8TF71 515 aa18.47■□□□□ 0.55
VCX3A-202ENST00000398729 EMILIN1Q9Y6C2 1016 aa18.47■□□□□ 0.55
VCX3A-202ENST00000398729 PNPLA7Q6ZV29 1317 aa18.47■□□□□ 0.55
VCX3A-202ENST00000398729 PPM1GO15355 546 aaPredicted RBP18.46■□□□□ 0.55
VCX3A-202ENST00000398729 SLC27A3Q5K4L6 730 aa18.46■□□□□ 0.55
VCX3A-202ENST00000398729 ZCRB1Q8TBF4 217 aaKnown RBP18.46■□□□□ 0.55
VCX3A-202ENST00000398729 PANK3Q9H999 370 aa18.46■□□□□ 0.55
VCX3A-202ENST00000398729 MEGF6O75095 1541 aa18.45■□□□□ 0.54
VCX3A-202ENST00000398729 USHBP1Q8N6Y0 703 aa18.45■□□□□ 0.54
VCX3A-202ENST00000398729 RAPGEF4Q8WZA2 1011 aa18.45■□□□□ 0.54
VCX3A-202ENST00000398729 ANKRD26Q9UPS8 1709 aa18.45■□□□□ 0.54
VCX3A-202ENST00000398729 MAP2P11137 1827 aaKnown RBP18.44■□□□□ 0.54
VCX3A-202ENST00000398729 PRIM1P49642 420 aaKnown RBP18.44■□□□□ 0.54
VCX3A-202ENST00000398729 NLGN2Q8NFZ4 835 aa18.43■□□□□ 0.54
VCX3A-202ENST00000398729 SHANK3Q9BYB0 1731 aa18.43■□□□□ 0.54
VCX3A-202ENST00000398729 TATP17735 454 aaPredicted RBP18.42■□□□□ 0.54
VCX3A-202ENST00000398729 TFCP2L1Q9NZI6 479 aa18.42■□□□□ 0.54
VCX3A-202ENST00000398729 WASHC2AQ641Q2 1341 aa18.42■□□□□ 0.54
VCX3A-202ENST00000398729 POLD1P28340 1107 aa18.41■□□□□ 0.54
VCX3A-202ENST00000398729 KLHL34Q8N239 644 aa18.41■□□□□ 0.54
VCX3A-202ENST00000398729 POLKQ9UBT6 870 aa18.41■□□□□ 0.54
VCX3A-202ENST00000398729 COL24A1Q17RW2 1714 aa18.4■□□□□ 0.54
VCX3A-202ENST00000398729 TNNT2P45379 298 aaPredicted RBP18.4■□□□□ 0.54
VCX3A-202ENST00000398729 SYTL4Q96C24 671 aaPredicted RBP18.4■□□□□ 0.54
VCX3A-202ENST00000398729 NSD2O96028 1365 aa18.4■□□□□ 0.54
VCX3A-202ENST00000398729 PELP1Q8IZL8 1130 aaKnown RBP18.39■□□□□ 0.53
VCX3A-202ENST00000398729 DOT1LQ8TEK3 1739 aa18.39■□□□□ 0.53
VCX3A-202ENST00000398729 YBX3P16989 372 aaKnown RBP eCLIP18.38■□□□□ 0.53
VCX3A-202ENST00000398729 GIGYF1O75420 1035 aaPredicted RBP18.37■□□□□ 0.53
VCX3A-202ENST00000398729 COL23A1Q86Y22 540 aaPredicted RBP18.37■□□□□ 0.53
VCX3A-202ENST00000398729 KNSTRNQ9Y448 316 aa18.37■□□□□ 0.53
VCX3A-202ENST00000398729 PCDH11XQ9BZA7 1347 aa18.37■□□□□ 0.53
VCX3A-202ENST00000398729 PCDH11YQ9BZA8 1340 aa18.37■□□□□ 0.53
VCX3A-202ENST00000398729 NCAPD2Q15021 1401 aa18.36■□□□□ 0.53
VCX3A-202ENST00000398729 QSER1Q2KHR3 1735 aa18.36■□□□□ 0.53
VCX3A-202ENST00000398729 KIF7Q2M1P5 1343 aa18.36■□□□□ 0.53
VCX3A-202ENST00000398729 MORC1Q86VD1 984 aa18.35■□□□□ 0.53
VCX3A-202ENST00000398729 EYA1Q99502 592 aa18.35■□□□□ 0.53
VCX3A-202ENST00000398729 CCNL1Q9UK58 526 aaPredicted RBP18.34■□□□□ 0.53
VCX3A-202ENST00000398729 TUBGCP6Q96RT7 1819 aa18.34■□□□□ 0.53
VCX3A-202ENST00000398729 PKD1L3Q7Z443 1732 aa18.33■□□□□ 0.52
VCX3A-202ENST00000398729 EIF4A2Q14240 407 aaKnown RBP18.33■□□□□ 0.52
VCX3A-202ENST00000398729 GRIN3BO60391 1043 aa18.32■□□□□ 0.52
VCX3A-202ENST00000398729 SPG7Q9UQ90 795 aa18.32■□□□□ 0.52
VCX3A-202ENST00000398729 CYP27B1O15528 508 aa18.31■□□□□ 0.52
VCX3A-202ENST00000398729 IFFO2Q5TF58 517 aa18.31■□□□□ 0.52
VCX3A-202ENST00000398729 LY75O60449 1722 aa18.31■□□□□ 0.52
VCX3A-202ENST00000398729 MSH5O43196 834 aa18.3■□□□□ 0.52
VCX3A-202ENST00000398729 MSL1Q68DK7 614 aa18.3■□□□□ 0.52
VCX3A-202ENST00000398729 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.3■□□□□ 0.52
VCX3A-202ENST00000398729 AMER1Q5JTC6 1135 aaPredicted RBP18.29■□□□□ 0.52
VCX3A-202ENST00000398729 IGSF1Q8N6C5 1336 aa18.27■□□□□ 0.52
VCX3A-202ENST00000398729 NKX1-1Q15270 411 aaPredicted RBP18.27■□□□□ 0.52
VCX3A-202ENST00000398729 PLEKHG2Q9H7P9 1386 aa18.27■□□□□ 0.51
VCX3A-202ENST00000398729 MPRIPQ6WCQ1 1025 aa18.26■□□□□ 0.51
VCX3A-202ENST00000398729 CD2APQ9Y5K6 639 aa18.26■□□□□ 0.51
VCX3A-202ENST00000398729 TOGARAM1Q9Y4F4 1720 aa18.26■□□□□ 0.51
VCX3A-202ENST00000398729 AMIGO3Q86WK7 504 aa18.25■□□□□ 0.51
VCX3A-202ENST00000398729 IFNL2Q8IZJ0 200 aa18.25■□□□□ 0.51
VCX3A-202ENST00000398729 ITGB4P16144 1822 aa18.25■□□□□ 0.51
VCX3A-202ENST00000398729 PER1O15534 1290 aaPredicted RBP18.24■□□□□ 0.51
VCX3A-202ENST00000398729 HMGB2P26583 209 aaKnown RBP18.24■□□□□ 0.51
VCX3A-202ENST00000398729 ATP10DQ9P241 1426 aa18.23■□□□□ 0.51
VCX3A-202ENST00000398729 PHKG2P15735 406 aa18.23■□□□□ 0.51
VCX3A-202ENST00000398729 SMIM5Q71RC9 77 aa18.23■□□□□ 0.51
VCX3A-202ENST00000398729 PALLDQ8WX93 1383 aa18.22■□□□□ 0.51
VCX3A-202ENST00000398729 SMARCC1Q92922 1105 aaPredicted RBP18.22■□□□□ 0.51
VCX3A-202ENST00000398729 PLEKHO1Q53GL0 409 aaPredicted RBP18.21■□□□□ 0.51
VCX3A-202ENST00000398729 CC2D1BQ5T0F9 858 aaKnown RBP18.21■□□□□ 0.51
VCX3A-202ENST00000398729 FLAD1Q8NFF5 587 aa18.21■□□□□ 0.51
VCX3A-202ENST00000398729 PIGBQ92521 554 aa18.2■□□□□ 0.5
VCX3A-202ENST00000398729 TMOD3Q9NYL9 352 aa18.2■□□□□ 0.5
VCX3A-202ENST00000398729 HSP90AB1P08238 724 aaKnown RBP18.19■□□□□ 0.5
VCX3A-202ENST00000398729 IL13P35225 146 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms