RNA–Protein interactions for RNA: ENST00000397406.5

TSPAN4-205, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSPAN4, Length 1,426 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-205ENST00000397406 U2AF1Q01081 240 aaKnown RBP eCLIP22.52■■□□□ 1.2
TSPAN4-205ENST00000397406 CARD10Q9BWT7 1032 aa22.52■■□□□ 1.2
TSPAN4-205ENST00000397406 HNRNPUQ00839 825 aaKnown RBP eCLIP22.5■■□□□ 1.19
TSPAN4-205ENST00000397406 PTF1AQ7RTS3 328 aa22.5■■□□□ 1.19
TSPAN4-205ENST00000397406 ERBB3P21860 1342 aa22.49■■□□□ 1.19
TSPAN4-205ENST00000397406 MARCH10Q8NA82 808 aaPredicted RBP22.48■■□□□ 1.19
TSPAN4-205ENST00000397406 FAM208AQ9UK61 1670 aaKnown RBP22.48■■□□□ 1.19
TSPAN4-205ENST00000397406 PSDA5PKW4 1024 aaPredicted RBP22.48■■□□□ 1.19
TSPAN4-205ENST00000397406 APBA3O96018 575 aa22.48■■□□□ 1.19
TSPAN4-205ENST00000397406 CCDC146Q8IYE0 955 aa22.48■■□□□ 1.19
TSPAN4-205ENST00000397406 CSB-PGBD3P0DP91 1061 aa22.47■■□□□ 1.19
TSPAN4-205ENST00000397406 DDB1Q16531 1140 aa22.47■■□□□ 1.19
TSPAN4-205ENST00000397406 WNK3Q9BYP7 1800 aa22.46■■□□□ 1.19
TSPAN4-205ENST00000397406 RSPH6AQ9H0K4 717 aa22.46■■□□□ 1.19
TSPAN4-205ENST00000397406 IGSF1Q8N6C5 1336 aa22.45■■□□□ 1.19
TSPAN4-205ENST00000397406 FCHSD2O94868 740 aa22.45■■□□□ 1.18
TSPAN4-205ENST00000397406 PLEKHF1Q96S99 279 aa22.45■■□□□ 1.18
TSPAN4-205ENST00000397406 RUNDC1Q96C34 613 aa22.44■■□□□ 1.18
TSPAN4-205ENST00000397406 LTV1Q96GA3 475 aaPredicted RBP22.44■■□□□ 1.18
TSPAN4-205ENST00000397406 EYA1Q99502 592 aa22.44■■□□□ 1.18
TSPAN4-205ENST00000397406 OVOS2A0A0G2JMS6 1433 aa22.44■■□□□ 1.18
TSPAN4-205ENST00000397406 HMOX1P09601 288 aa22.43■■□□□ 1.18
TSPAN4-205ENST00000397406 ANKRD24Q8TF21 1146 aa22.43■■□□□ 1.18
TSPAN4-205ENST00000397406 KDRP35968 1356 aa22.43■■□□□ 1.18
TSPAN4-205ENST00000397406 NCAPD2Q15021 1401 aa22.42■■□□□ 1.18
TSPAN4-205ENST00000397406 CDCA7Q9BWT1 371 aaPredicted RBP22.41■■□□□ 1.18
TSPAN4-205ENST00000397406 PNNQ9H307 717 aaKnown RBP22.41■■□□□ 1.18
TSPAN4-205ENST00000397406 ZBED9Q6R2W3 1325 aa22.41■■□□□ 1.18
TSPAN4-205ENST00000397406 BCL9O00512 1426 aa22.41■■□□□ 1.18
TSPAN4-205ENST00000397406 SENP3-EIF4A1A0A087X0R7 540 aa22.4■■□□□ 1.18
TSPAN4-205ENST00000397406 R3HDM1Q15032 1099 aaKnown RBP22.4■■□□□ 1.18
TSPAN4-205ENST00000397406 SULT6B1Q6IMI4 303 aa22.4■■□□□ 1.18
TSPAN4-205ENST00000397406 AEBP1Q8IUX7 1158 aa22.4■■□□□ 1.18
TSPAN4-205ENST00000397406 NLRP2Q9NX02 1062 aa22.4■■□□□ 1.18
TSPAN4-205ENST00000397406 APAF1O14727 1248 aa22.4■■□□□ 1.18
TSPAN4-205ENST00000397406 PRKAR2BP31323 418 aa22.4■■□□□ 1.18
TSPAN4-205ENST00000397406 NBPF6Q5VWK0 638 aa22.39■■□□□ 1.17
TSPAN4-205ENST00000397406 NBPF4Q96M43 638 aa22.39■■□□□ 1.17
TSPAN4-205ENST00000397406 DLG5Q8TDM6 1919 aa22.38■■□□□ 1.17
TSPAN4-205ENST00000397406 RREB1Q92766 1687 aa22.38■■□□□ 1.17
TSPAN4-205ENST00000397406 TNS2Q63HR2 1409 aa22.38■■□□□ 1.17
TSPAN4-205ENST00000397406 SBF2Q86WG5 1849 aa22.37■■□□□ 1.17
TSPAN4-205ENST00000397406 EXOC5O00471 708 aa22.36■■□□□ 1.17
TSPAN4-205ENST00000397406 PROM2Q8N271 834 aa22.36■■□□□ 1.17
TSPAN4-205ENST00000397406 MAPK8IP3Q9UPT6 1336 aa22.36■■□□□ 1.17
TSPAN4-205ENST00000397406 NUP188Q5SRE5 1749 aa22.35■■□□□ 1.17
TSPAN4-205ENST00000397406 BCL11BQ9C0K0 894 aaPredicted RBP22.35■■□□□ 1.17
TSPAN4-205ENST00000397406 KCNQ2O43526 872 aa22.34■■□□□ 1.17
TSPAN4-205ENST00000397406 USHBP1Q8N6Y0 703 aa22.34■■□□□ 1.17
TSPAN4-205ENST00000397406 PHACTR3Q96KR7 559 aa22.34■■□□□ 1.17
TSPAN4-205ENST00000397406 IL2RBP14784 551 aa22.33■■□□□ 1.17
TSPAN4-205ENST00000397406 NGEFQ8N5V2 710 aa22.33■■□□□ 1.17
TSPAN4-205ENST00000397406 PLSCR1O15162 318 aa22.32■■□□□ 1.16
TSPAN4-205ENST00000397406 NCBP3Q53F19 620 aaKnown RBP22.32■■□□□ 1.16
TSPAN4-205ENST00000397406 SALL2Q9Y467 1007 aaPredicted RBP22.32■■□□□ 1.16
TSPAN4-205ENST00000397406 TMPOP42166 694 aaKnown RBP22.31■■□□□ 1.16
TSPAN4-205ENST00000397406 LRP5O75197 1615 aa22.31■■□□□ 1.16
TSPAN4-205ENST00000397406 ZNF521Q96K83 1311 aa22.31■■□□□ 1.16
TSPAN4-205ENST00000397406 NEFMP07197 916 aa22.31■■□□□ 1.16
TSPAN4-205ENST00000397406 RRP7AQ9Y3A4 280 aaKnown RBP22.31■■□□□ 1.16
TSPAN4-205ENST00000397406 ANO8Q9HCE9 1232 aaPredicted RBP22.3■■□□□ 1.16
TSPAN4-205ENST00000397406 NEUROD2Q15784 382 aa22.28■■□□□ 1.16
TSPAN4-205ENST00000397406 NFE2L2Q16236 605 aa22.28■■□□□ 1.16
TSPAN4-205ENST00000397406 CCDC27Q2M243 656 aa22.28■■□□□ 1.16
TSPAN4-205ENST00000397406 ACSBG1Q96GR2 724 aa22.28■■□□□ 1.16
TSPAN4-205ENST00000397406 CENPBP07199 599 aaPredicted RBP22.27■■□□□ 1.16
TSPAN4-205ENST00000397406 MEGF6O75095 1541 aa22.25■■□□□ 1.15
TSPAN4-205ENST00000397406 PKD1L3Q7Z443 1732 aa22.25■■□□□ 1.15
TSPAN4-205ENST00000397406 RIPK4P57078 832 aa22.25■■□□□ 1.15
TSPAN4-205ENST00000397406 WWC1Q8IX03 1113 aa22.25■■□□□ 1.15
TSPAN4-205ENST00000397406 RGPD3A6NKT7 1758 aaPredicted RBP22.25■■□□□ 1.15
TSPAN4-205ENST00000397406 RGPD4Q7Z3J3 1758 aa22.25■■□□□ 1.15
TSPAN4-205ENST00000397406 TRIM35Q9UPQ4 493 aa22.24■■□□□ 1.15
TSPAN4-205ENST00000397406 PLEKHG2Q9H7P9 1386 aa22.24■■□□□ 1.15
TSPAN4-205ENST00000397406 MTHFSDQ2M296 383 aaKnown RBP22.23■■□□□ 1.15
TSPAN4-205ENST00000397406 VIRMAQ69YN4 1812 aaKnown RBP22.23■■□□□ 1.15
TSPAN4-205ENST00000397406 PDGFDQ9GZP0 370 aaPredicted RBP22.23■■□□□ 1.15
TSPAN4-205ENST00000397406 NHSQ6T4R5 1651 aa22.22■■□□□ 1.15
TSPAN4-205ENST00000397406 TXNRD1Q16881 649 aa22.22■■□□□ 1.15
TSPAN4-205ENST00000397406 NBPF14Q5TI25 921 aa22.21■■□□□ 1.15
TSPAN4-205ENST00000397406 GAS2L2Q8NHY3 880 aa22.21■■□□□ 1.15
TSPAN4-205ENST00000397406 DDX54Q8TDD1 881 aaKnown RBP22.21■■□□□ 1.15
TSPAN4-205ENST00000397406 RAPGEF4Q8WZA2 1011 aa22.2■■□□□ 1.14
TSPAN4-205ENST00000397406 SHANK3Q9BYB0 1731 aa22.19■■□□□ 1.14
TSPAN4-205ENST00000397406 TATP17735 454 aaPredicted RBP22.18■■□□□ 1.14
TSPAN4-205ENST00000397406 GOLGA2Q08379 1002 aa22.18■■□□□ 1.14
TSPAN4-205ENST00000397406 WDR63Q8IWG1 891 aa22.18■■□□□ 1.14
TSPAN4-205ENST00000397406 CDCA7LQ96GN5 454 aa22.18■■□□□ 1.14
TSPAN4-205ENST00000397406 LMOD3Q0VAK6 560 aa22.17■■□□□ 1.14
TSPAN4-205ENST00000397406 AMOTQ4VCS5 1084 aa22.17■■□□□ 1.14
TSPAN4-205ENST00000397406 PLEKHO1Q53GL0 409 aaPredicted RBP22.17■■□□□ 1.14
TSPAN4-205ENST00000397406 ZCRB1Q8TBF4 217 aaKnown RBP22.16■■□□□ 1.14
TSPAN4-205ENST00000397406 ADAMTS7Q9UKP4 1686 aa22.16■■□□□ 1.14
TSPAN4-205ENST00000397406 SPINK5Q9NQ38 1064 aaPredicted RBP22.15■■□□□ 1.14
TSPAN4-205ENST00000397406 LRRC4BQ9NT99 713 aa22.15■■□□□ 1.14
TSPAN4-205ENST00000397406 MAP3K5Q99683 1374 aa22.15■■□□□ 1.14
TSPAN4-205ENST00000397406 SLFN5Q08AF3 891 aa22.14■■□□□ 1.14
TSPAN4-205ENST00000397406 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.14■■□□□ 1.14
TSPAN4-205ENST00000397406 TRMT2AQ8IZ69 625 aaKnown RBP22.14■■□□□ 1.13
TSPAN4-205ENST00000397406 BTAF1O14981 1849 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms