RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 DDX54Q8TDD1 881 aaKnown RBP13.67□□□□□ -0.22
NEDD9-203ENST00000397378 NMRK2Q9NPI5 230 aa13.67□□□□□ -0.22
NEDD9-203ENST00000397378 CABP1Q9NZU7 370 aa13.67□□□□□ -0.22
NEDD9-203ENST00000397378 ERBB3P21860 1342 aa13.65□□□□□ -0.22
NEDD9-203ENST00000397378 CENPJQ9HC77 1338 aaPredicted RBP13.65□□□□□ -0.22
NEDD9-203ENST00000397378 NFAT5O94916 1531 aa13.65□□□□□ -0.22
NEDD9-203ENST00000397378 NBPF1Q3BBV0 1214 aa13.65□□□□□ -0.22
NEDD9-203ENST00000397378 RBM46Q8TBY0 533 aaKnown RBP13.65□□□□□ -0.22
NEDD9-203ENST00000397378 CICQ96RK0 1608 aaPredicted RBP13.64□□□□□ -0.23
NEDD9-203ENST00000397378 PRIM1P49642 420 aaKnown RBP13.64□□□□□ -0.23
NEDD9-203ENST00000397378 C5P01031 1676 aa13.63□□□□□ -0.23
NEDD9-203ENST00000397378 ANKRD36BQ8N2N9 1353 aa13.63□□□□□ -0.23
NEDD9-203ENST00000397378 HSPA1AP0DMV8 641 aaKnown RBP13.63□□□□□ -0.23
NEDD9-203ENST00000397378 HSPA1BP0DMV9 641 aaKnown RBP13.63□□□□□ -0.23
NEDD9-203ENST00000397378 FSTL1Q12841 308 aa13.62□□□□□ -0.23
NEDD9-203ENST00000397378 LTN1O94822 1766 aa13.62□□□□□ -0.23
NEDD9-203ENST00000397378 TTC21BQ7Z4L5 1316 aa13.62□□□□□ -0.23
NEDD9-203ENST00000397378 NSD2O96028 1365 aa13.61□□□□□ -0.23
NEDD9-203ENST00000397378 USP47Q96K76 1375 aa13.61□□□□□ -0.23
NEDD9-203ENST00000397378 FLAD1Q8NFF5 587 aa13.61□□□□□ -0.23
NEDD9-203ENST00000397378 USP54Q70EL1 1684 aa13.6□□□□□ -0.23
NEDD9-203ENST00000397378 ANKRD24Q8TF21 1146 aa13.6□□□□□ -0.23
NEDD9-203ENST00000397378 PCDH10Q9P2E7 1040 aa13.6□□□□□ -0.23
NEDD9-203ENST00000397378 ZNF692Q9BU19 519 aaPredicted RBP13.59□□□□□ -0.23
NEDD9-203ENST00000397378 TTC21AQ8NDW8 1320 aa13.59□□□□□ -0.23
NEDD9-203ENST00000397378 EVC2Q86UK5 1308 aa13.58□□□□□ -0.24
NEDD9-203ENST00000397378 ARHGAP27Q6ZUM4 889 aa13.57□□□□□ -0.24
NEDD9-203ENST00000397378 BCS1LQ9Y276 419 aa13.57□□□□□ -0.24
NEDD9-203ENST00000397378 TAF1LQ8IZX4 1826 aa13.57□□□□□ -0.24
NEDD9-203ENST00000397378 MON2Q7Z3U7 1717 aa13.56□□□□□ -0.24
NEDD9-203ENST00000397378 PHF14O94880 888 aa13.56□□□□□ -0.24
NEDD9-203ENST00000397378 N4BP2Q86UW6 1770 aaPredicted RBP13.55□□□□□ -0.24
NEDD9-203ENST00000397378 AK7Q96M32 723 aa13.55□□□□□ -0.24
NEDD9-203ENST00000397378 PLEKHG2Q9H7P9 1386 aa13.55□□□□□ -0.24
NEDD9-203ENST00000397378 KCPQ6ZWJ8 1503 aa13.54□□□□□ -0.24
NEDD9-203ENST00000397378 FAM208AQ9UK61 1670 aaKnown RBP13.54□□□□□ -0.24
NEDD9-203ENST00000397378 C4BP0C0L5 1744 aa13.54□□□□□ -0.24
NEDD9-203ENST00000397378 PKD1L3Q7Z443 1732 aa13.54□□□□□ -0.24
NEDD9-203ENST00000397378 HMGB2P26583 209 aaKnown RBP13.54□□□□□ -0.24
NEDD9-203ENST00000397378 KDM2BQ8NHM5 1336 aa13.54□□□□□ -0.24
NEDD9-203ENST00000397378 PXDNLA1KZ92 1463 aa13.54□□□□□ -0.24
NEDD9-203ENST00000397378 TOGARAM1Q9Y4F4 1720 aa13.53□□□□□ -0.24
NEDD9-203ENST00000397378 SMC1BQ8NDV3 1235 aa13.53□□□□□ -0.24
NEDD9-203ENST00000397378 LTV1Q96GA3 475 aaPredicted RBP13.53□□□□□ -0.24
NEDD9-203ENST00000397378 KTN1Q86UP2 1357 aaKnown RBP13.53□□□□□ -0.24
NEDD9-203ENST00000397378 TNRC6CQ9HCJ0 1690 aaKnown RBP13.53□□□□□ -0.24
NEDD9-203ENST00000397378 UBR3Q6ZT12 1888 aa13.53□□□□□ -0.24
NEDD9-203ENST00000397378 C9orf131Q5VYM1 1079 aa13.52□□□□□ -0.25
NEDD9-203ENST00000397378 SMIM5Q71RC9 77 aa13.52□□□□□ -0.25
NEDD9-203ENST00000397378 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.52□□□□□ -0.25
NEDD9-203ENST00000397378 RRAGCQ9HB90 399 aa13.52□□□□□ -0.25
NEDD9-203ENST00000397378 KIAA1551Q9HCM1 1747 aa13.52□□□□□ -0.25
NEDD9-203ENST00000397378 NSD3Q9BZ95 1437 aa13.51□□□□□ -0.25
NEDD9-203ENST00000397378 USP31Q70CQ4 1352 aa13.51□□□□□ -0.25
NEDD9-203ENST00000397378 PALLDQ8WX93 1383 aa13.51□□□□□ -0.25
NEDD9-203ENST00000397378 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.51□□□□□ -0.25
NEDD9-203ENST00000397378 AMIGO3Q86WK7 504 aa13.51□□□□□ -0.25
NEDD9-203ENST00000397378 ZCRB1Q8TBF4 217 aaKnown RBP13.51□□□□□ -0.25
NEDD9-203ENST00000397378 KIF13BQ9NQT8 1826 aa13.5□□□□□ -0.25
NEDD9-203ENST00000397378 C10orf71Q711Q0 1435 aa13.5□□□□□ -0.25
NEDD9-203ENST00000397378 FCHSD2O94868 740 aa13.5□□□□□ -0.25
NEDD9-203ENST00000397378 FAM161AQ3B820 660 aa13.5□□□□□ -0.25
NEDD9-203ENST00000397378 A0A0G2JLW4 131 aa13.49□□□□□ -0.25
NEDD9-203ENST00000397378 TGFB2P61812 414 aa13.48□□□□□ -0.25
NEDD9-203ENST00000397378 NME9Q86XW9 330 aa13.48□□□□□ -0.25
NEDD9-203ENST00000397378 MMP10P09238 476 aa13.47□□□□□ -0.25
NEDD9-203ENST00000397378 L3MBTL2Q969R5 705 aa13.47□□□□□ -0.25
NEDD9-203ENST00000397378 RNF181Q9P0P0 153 aa13.47□□□□□ -0.25
NEDD9-203ENST00000397378 MEGF6O75095 1541 aa13.47□□□□□ -0.25
NEDD9-203ENST00000397378 RGPD2P0DJD1 1756 aa13.47□□□□□ -0.25
NEDD9-203ENST00000397378 BRCA1P38398 1863 aaKnown RBP13.46□□□□□ -0.25
NEDD9-203ENST00000397378 SSFA2P28290 1259 aa13.46□□□□□ -0.25
NEDD9-203ENST00000397378 MPRIPQ6WCQ1 1025 aa13.46□□□□□ -0.25
NEDD9-203ENST00000397378 ARFGEF1Q9Y6D6 1849 aa13.46□□□□□ -0.26
NEDD9-203ENST00000397378 ROCK2O75116 1388 aaKnown RBP13.45□□□□□ -0.26
NEDD9-203ENST00000397378 SBNO2Q9Y2G9 1366 aa13.45□□□□□ -0.26
NEDD9-203ENST00000397378 CD163L1Q9NR16 1453 aa13.45□□□□□ -0.26
NEDD9-203ENST00000397378 DPEP1P16444 411 aa13.45□□□□□ -0.26
NEDD9-203ENST00000397378 IP6K1Q92551 441 aa13.45□□□□□ -0.26
NEDD9-203ENST00000397378 FOXN1O15353 648 aa13.43□□□□□ -0.26
NEDD9-203ENST00000397378 EDC4Q6P2E9 1401 aaKnown RBP13.42□□□□□ -0.26
NEDD9-203ENST00000397378 GNPATO15228 680 aa13.42□□□□□ -0.26
NEDD9-203ENST00000397378 SMARCC1Q92922 1105 aaPredicted RBP13.42□□□□□ -0.26
NEDD9-203ENST00000397378 PRDM10Q9NQV6 1147 aa13.42□□□□□ -0.26
NEDD9-203ENST00000397378 CCDC87Q9NVE4 849 aa13.42□□□□□ -0.26
NEDD9-203ENST00000397378 ITGB4P16144 1822 aa13.41□□□□□ -0.26
NEDD9-203ENST00000397378 LINC00116Q8NCU8 138 aa13.41□□□□□ -0.26
NEDD9-203ENST00000397378 MKRN1Q9UHC7 482 aaKnown RBP13.41□□□□□ -0.26
NEDD9-203ENST00000397378 SBF1O95248 1867 aa13.4□□□□□ -0.26
NEDD9-203ENST00000397378 C4AP0C0L4 1744 aa13.39□□□□□ -0.27
NEDD9-203ENST00000397378 VEGFAP15692 232 aaPredicted RBP13.39□□□□□ -0.27
NEDD9-203ENST00000397378 HDGFL2Q7Z4V5 671 aaPredicted RBP13.39□□□□□ -0.27
NEDD9-203ENST00000397378 RAPGEF4Q8WZA2 1011 aa13.39□□□□□ -0.27
NEDD9-203ENST00000397378 AIDAQ96BJ3 306 aa13.39□□□□□ -0.27
NEDD9-203ENST00000397378 PIM2Q9P1W9 311 aa13.39□□□□□ -0.27
NEDD9-203ENST00000397378 CGNL1Q0VF96 1302 aa13.39□□□□□ -0.27
NEDD9-203ENST00000397378 PCDH11XQ9BZA7 1347 aa13.39□□□□□ -0.27
NEDD9-203ENST00000397378 PCDH11YQ9BZA8 1340 aa13.39□□□□□ -0.27
NEDD9-203ENST00000397378 HOXC9P31274 260 aa13.38□□□□□ -0.27
NEDD9-203ENST00000397378 AMPHP49418 695 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms