RNA–Protein interactions for RNA: ENST00000397200.8

CAPN3-207, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-207ENST00000397200 IRX6P78412 446 aaPredicted RBP19.54■□□□□ 0.72
CAPN3-207ENST00000397200 ZNF521Q96K83 1311 aa19.53■□□□□ 0.72
CAPN3-207ENST00000397200 PHACTR3Q96KR7 559 aa19.53■□□□□ 0.72
CAPN3-207ENST00000397200 PPP4R2Q9NY27 417 aa19.53■□□□□ 0.72
CAPN3-207ENST00000397200 TRPC5Q9UL62 973 aaPredicted RBP19.53■□□□□ 0.72
CAPN3-207ENST00000397200 THRAP3Q9Y2W1 955 aaKnown RBP19.53■□□□□ 0.72
CAPN3-207ENST00000397200 MEGF6O75095 1541 aa19.53■□□□□ 0.72
CAPN3-207ENST00000397200 ATRNO75882 1429 aa19.52■□□□□ 0.72
CAPN3-207ENST00000397200 IL2RBP14784 551 aa19.52■□□□□ 0.72
CAPN3-207ENST00000397200 APAF1O14727 1248 aa19.51■□□□□ 0.71
CAPN3-207ENST00000397200 ZNF772Q68DY9 489 aaPredicted RBP19.51■□□□□ 0.71
CAPN3-207ENST00000397200 PLEKHG2Q9H7P9 1386 aa19.51■□□□□ 0.71
CAPN3-207ENST00000397200 OVOS2A0A0G2JMS6 1433 aa19.5■□□□□ 0.71
CAPN3-207ENST00000397200 PLEKHO1Q53GL0 409 aaPredicted RBP19.5■□□□□ 0.71
CAPN3-207ENST00000397200 PKD1L3Q7Z443 1732 aa19.5■□□□□ 0.71
CAPN3-207ENST00000397200 SENP3-EIF4A1A0A087X0R7 540 aa19.49■□□□□ 0.71
CAPN3-207ENST00000397200 AMOTQ4VCS5 1084 aa19.49■□□□□ 0.71
CAPN3-207ENST00000397200 QTRT2Q9H974 415 aaKnown RBP19.49■□□□□ 0.71
CAPN3-207ENST00000397200 DISP2A7MBM2 1401 aa19.49■□□□□ 0.71
CAPN3-207ENST00000397200 NFE2L2Q16236 605 aa19.48■□□□□ 0.71
CAPN3-207ENST00000397200 BARGINQ6ZT62 677 aa19.48■□□□□ 0.71
CAPN3-207ENST00000397200 GAS2L2Q8NHY3 880 aa19.48■□□□□ 0.71
CAPN3-207ENST00000397200 GJD4Q96KN9 370 aaPredicted RBP19.48■□□□□ 0.71
CAPN3-207ENST00000397200 CDCA7Q9BWT1 371 aaPredicted RBP19.48■□□□□ 0.71
CAPN3-207ENST00000397200 DLG5Q8TDM6 1919 aa19.48■□□□□ 0.71
CAPN3-207ENST00000397200 GLI3P10071 1580 aa19.47■□□□□ 0.71
CAPN3-207ENST00000397200 TMPOP42166 694 aaKnown RBP19.47■□□□□ 0.71
CAPN3-207ENST00000397200 NEUROD2Q15784 382 aa19.47■□□□□ 0.71
CAPN3-207ENST00000397200 MTHFSDQ2M296 383 aaKnown RBP19.47■□□□□ 0.71
CAPN3-207ENST00000397200 SPG7Q9UQ90 795 aa19.47■□□□□ 0.71
CAPN3-207ENST00000397200 RRP7AQ9Y3A4 280 aaKnown RBP19.47■□□□□ 0.71
CAPN3-207ENST00000397200 PHF23Q9BUL5 403 aaPredicted RBP19.47■□□□□ 0.71
CAPN3-207ENST00000397200 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.47■□□□□ 0.71
CAPN3-207ENST00000397200 NGEFQ8N5V2 710 aa19.46■□□□□ 0.71
CAPN3-207ENST00000397200 SALL2Q9Y467 1007 aaPredicted RBP19.46■□□□□ 0.71
CAPN3-207ENST00000397200 RIPK4P57078 832 aa19.45■□□□□ 0.7
CAPN3-207ENST00000397200 FAM98CQ17RN3 349 aaKnown RBP19.45■□□□□ 0.7
CAPN3-207ENST00000397200 ZNF530Q6P9A1 599 aaPredicted RBP19.45■□□□□ 0.7
CAPN3-207ENST00000397200 ZCRB1Q8TBF4 217 aaKnown RBP19.45■□□□□ 0.7
CAPN3-207ENST00000397200 CDCA7LQ96GN5 454 aa19.44■□□□□ 0.7
CAPN3-207ENST00000397200 TSHZ2Q9NRE2 1034 aa19.44■□□□□ 0.7
CAPN3-207ENST00000397200 RCAN3Q9UKA8 241 aa19.44■□□□□ 0.7
CAPN3-207ENST00000397200 SHANK3Q9BYB0 1731 aa19.43■□□□□ 0.7
CAPN3-207ENST00000397200 LRRC37A3O60309 1634 aa19.43■□□□□ 0.7
CAPN3-207ENST00000397200 RRP1P56182 461 aaKnown RBP19.43■□□□□ 0.7
CAPN3-207ENST00000397200 NCBP3Q53F19 620 aaKnown RBP19.43■□□□□ 0.7
CAPN3-207ENST00000397200 C1orf141Q5JVX7 400 aa19.43■□□□□ 0.7
CAPN3-207ENST00000397200 PCDH11XQ9BZA7 1347 aa19.43■□□□□ 0.7
CAPN3-207ENST00000397200 PCDH11YQ9BZA8 1340 aa19.43■□□□□ 0.7
CAPN3-207ENST00000397200 THSD7AQ9UPZ6 1657 aa19.42■□□□□ 0.7
CAPN3-207ENST00000397200 A0A0G2JS52 829 aa19.42■□□□□ 0.7
CAPN3-207ENST00000397200 EXOC5O00471 708 aa19.42■□□□□ 0.7
CAPN3-207ENST00000397200 MYT1Q01538 1121 aa19.42■□□□□ 0.7
CAPN3-207ENST00000397200 LMOD3Q0VAK6 560 aa19.42■□□□□ 0.7
CAPN3-207ENST00000397200 MAP3K5Q99683 1374 aa19.42■□□□□ 0.7
CAPN3-207ENST00000397200 TNS2Q63HR2 1409 aa19.42■□□□□ 0.7
CAPN3-207ENST00000397200 DDB1Q16531 1140 aa19.41■□□□□ 0.7
CAPN3-207ENST00000397200 AKAP4Q5JQC9 854 aa19.41■□□□□ 0.7
CAPN3-207ENST00000397200 GNAT3A8MTJ3 354 aa19.4■□□□□ 0.7
CAPN3-207ENST00000397200 RBM6P78332 1123 aaKnown RBP19.4■□□□□ 0.7
CAPN3-207ENST00000397200 CCDC27Q2M243 656 aa19.4■□□□□ 0.7
CAPN3-207ENST00000397200 IFNL2Q8IZJ0 200 aa19.4■□□□□ 0.7
CAPN3-207ENST00000397200 RTF1Q92541 710 aaKnown RBP19.4■□□□□ 0.7
CAPN3-207ENST00000397200 RGS17Q9UGC6 210 aaPredicted RBP19.4■□□□□ 0.7
CAPN3-207ENST00000397200 TRIM35Q9UPQ4 493 aa19.4■□□□□ 0.7
CAPN3-207ENST00000397200 VIRMAQ69YN4 1812 aaKnown RBP19.39■□□□□ 0.69
CAPN3-207ENST00000397200 PHKG2P15735 406 aa19.39■□□□□ 0.69
CAPN3-207ENST00000397200 TRMT2AQ8IZ69 625 aaKnown RBP19.39■□□□□ 0.69
CAPN3-207ENST00000397200 DDX54Q8TDD1 881 aaKnown RBP19.39■□□□□ 0.69
CAPN3-207ENST00000397200 CYP27B1O15528 508 aa19.38■□□□□ 0.69
CAPN3-207ENST00000397200 HTATSF1O43719 755 aaKnown RBP19.38■□□□□ 0.69
CAPN3-207ENST00000397200 ONECUT3O60422 494 aaPredicted RBP19.38■□□□□ 0.69
CAPN3-207ENST00000397200 DUSP27Q5VZP5 1158 aa19.38■□□□□ 0.69
CAPN3-207ENST00000397200 GOLGA2Q08379 1002 aa19.37■□□□□ 0.69
CAPN3-207ENST00000397200 WWC1Q8IX03 1113 aa19.37■□□□□ 0.69
CAPN3-207ENST00000397200 HSP90AB1P08238 724 aaKnown RBP19.36■□□□□ 0.69
CAPN3-207ENST00000397200 RXRBP28702 533 aa19.36■□□□□ 0.69
CAPN3-207ENST00000397200 SLFN5Q08AF3 891 aa19.36■□□□□ 0.69
CAPN3-207ENST00000397200 SEPT12Q8IYM1 358 aa19.36■□□□□ 0.69
CAPN3-207ENST00000397200 DCTN1Q14203 1278 aa19.35■□□□□ 0.69
CAPN3-207ENST00000397200 MPRIPQ6WCQ1 1025 aa19.35■□□□□ 0.69
CAPN3-207ENST00000397200 MCM10Q7L590 875 aa19.35■□□□□ 0.69
CAPN3-207ENST00000397200 SCN11AQ9UI33 1791 aa19.35■□□□□ 0.69
CAPN3-207ENST00000397200 POTEAQ6S8J7 498 aa19.34■□□□□ 0.69
CAPN3-207ENST00000397200 ADAMTS7Q9UKP4 1686 aa19.34■□□□□ 0.69
CAPN3-207ENST00000397200 CALD1Q05682 793 aaKnown RBP19.33■□□□□ 0.69
CAPN3-207ENST00000397200 DCAF5Q96JK2 942 aa19.33■□□□□ 0.69
CAPN3-207ENST00000397200 THUMPD2Q9BTF0 503 aaKnown RBP19.33■□□□□ 0.69
CAPN3-207ENST00000397200 RNMTO43148 476 aaKnown RBP19.33■□□□□ 0.68
CAPN3-207ENST00000397200 NKX1-1Q15270 411 aaPredicted RBP19.33■□□□□ 0.68
CAPN3-207ENST00000397200 WDR63Q8IWG1 891 aa19.33■□□□□ 0.68
CAPN3-207ENST00000397200 IL17REQ8NFR9 667 aa19.33■□□□□ 0.68
CAPN3-207ENST00000397200 KDM6AO15550 1401 aaPredicted RBP19.32■□□□□ 0.68
CAPN3-207ENST00000397200 B4GALNT3Q6L9W6 998 aa19.32■□□□□ 0.68
CAPN3-207ENST00000397200 LGR6Q9HBX8 967 aa19.32■□□□□ 0.68
CAPN3-207ENST00000397200 BRWD3Q6RI45 1802 aa19.31■□□□□ 0.68
CAPN3-207ENST00000397200 MARCH10Q8NA82 808 aaPredicted RBP19.31■□□□□ 0.68
CAPN3-207ENST00000397200 CEMIPQ8WUJ3 1361 aa19.31■□□□□ 0.68
CAPN3-207ENST00000397200 IL16Q14005 1332 aa19.29■□□□□ 0.68
CAPN3-207ENST00000397200 TOGARAM1Q9Y4F4 1720 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms