RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 CEBPAP49715 358 aaPredicted RBP6.93□□□□□ -1.3
VPS41-203ENST00000395969 CNGB1Q14028 1251 aaPredicted RBP6.93□□□□□ -1.3
VPS41-203ENST00000395969 MYH16Q9H6N6 1097 aa6.93□□□□□ -1.3
VPS41-203ENST00000395969 TNS3Q68CZ2 1445 aa6.92□□□□□ -1.3
VPS41-203ENST00000395969 NFE2L2Q16236 605 aa6.92□□□□□ -1.3
VPS41-203ENST00000395969 COG3Q96JB2 828 aa6.92□□□□□ -1.3
VPS41-203ENST00000395969 BACH2Q9BYV9 841 aa6.92□□□□□ -1.3
VPS41-203ENST00000395969 MS4A1P11836 297 aa6.92□□□□□ -1.3
VPS41-203ENST00000395969 HEG1Q9ULI3 1381 aa6.92□□□□□ -1.3
VPS41-203ENST00000395969 MLECQ14165 292 aa6.92□□□□□ -1.3
VPS41-203ENST00000395969 FAM43AQ8N2R8 423 aa6.92□□□□□ -1.3
VPS41-203ENST00000395969 TCP11L2Q8N4U5 519 aa6.92□□□□□ -1.3
VPS41-203ENST00000395969 COL16A1Q07092 1604 aaPredicted RBP6.91□□□□□ -1.3
VPS41-203ENST00000395969 PDE4AP27815 886 aa6.91□□□□□ -1.3
VPS41-203ENST00000395969 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.91□□□□□ -1.3
VPS41-203ENST00000395969 KCNH5Q8NCM2 988 aa6.91□□□□□ -1.3
VPS41-203ENST00000395969 STK26Q9P289 416 aa6.91□□□□□ -1.3
VPS41-203ENST00000395969 MSH6P52701 1360 aa6.9□□□□□ -1.3
VPS41-203ENST00000395969 C19orf44Q9H6X5 657 aa6.9□□□□□ -1.3
VPS41-203ENST00000395969 RGS12O14924 1447 aa6.9□□□□□ -1.3
VPS41-203ENST00000395969 U3KPZ7 1027 aaPredicted RBP6.9□□□□□ -1.31
VPS41-203ENST00000395969 APAF1O14727 1248 aa6.9□□□□□ -1.31
VPS41-203ENST00000395969 NUTM2DQ5VT03 806 aaPredicted RBP6.9□□□□□ -1.31
VPS41-203ENST00000395969 KIF16BQ96L93 1317 aa6.89□□□□□ -1.31
VPS41-203ENST00000395969 RARSP54136 660 aaKnown RBP6.89□□□□□ -1.31
VPS41-203ENST00000395969 NECTIN2Q92692 538 aa6.89□□□□□ -1.31
VPS41-203ENST00000395969 NUP188Q5SRE5 1749 aa6.89□□□□□ -1.31
VPS41-203ENST00000395969 NFKBIBQ15653 356 aa6.89□□□□□ -1.31
VPS41-203ENST00000395969 NME9Q86XW9 330 aa6.89□□□□□ -1.31
VPS41-203ENST00000395969 IP6K1Q92551 441 aa6.89□□□□□ -1.31
VPS41-203ENST00000395969 FRAT1Q92837 279 aaPredicted RBP6.89□□□□□ -1.31
VPS41-203ENST00000395969 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.89□□□□□ -1.317e-7■■■□□ 17.9
VPS41-203ENST00000395969 HOXB7P09629 217 aa6.88□□□□□ -1.31
VPS41-203ENST00000395969 DDRGK1Q96HY6 314 aa6.88□□□□□ -1.31
VPS41-203ENST00000395969 GGNBP2Q9H3C7 697 aa6.88□□□□□ -1.31
VPS41-203ENST00000395969 SPINK5Q9NQ38 1064 aaPredicted RBP6.88□□□□□ -1.31
VPS41-203ENST00000395969 PHF8Q9UPP1 1060 aa6.88□□□□□ -1.31
VPS41-203ENST00000395969 SOS2Q07890 1332 aaPredicted RBP6.88□□□□□ -1.31
VPS41-203ENST00000395969 PHLPP1O60346 1717 aa6.88□□□□□ -1.31
VPS41-203ENST00000395969 EIF4A2Q14240 407 aaKnown RBP6.88□□□□□ -1.31
VPS41-203ENST00000395969 MAP3K19Q56UN5 1328 aa6.88□□□□□ -1.31
VPS41-203ENST00000395969 C5P01031 1676 aa6.88□□□□□ -1.31
VPS41-203ENST00000395969 CHL1O00533 1208 aa6.87□□□□□ -1.31
VPS41-203ENST00000395969 SAMD1Q6SPF0 538 aaPredicted RBP6.87□□□□□ -1.31
VPS41-203ENST00000395969 CDCA7LQ96GN5 454 aa6.87□□□□□ -1.31
VPS41-203ENST00000395969 KDM4FA0A1W2PPD8 638 aa6.87□□□□□ -1.31
VPS41-203ENST00000395969 ABCC4O15439 1325 aa6.87□□□□□ -1.31
VPS41-203ENST00000395969 PDIA4P13667 645 aaKnown RBP6.87□□□□□ -1.31
VPS41-203ENST00000395969 IFNLR1Q8IU57 520 aaPredicted RBP6.87□□□□□ -1.31
VPS41-203ENST00000395969 COL15A1P39059 1388 aa6.87□□□□□ -1.31
VPS41-203ENST00000395969 TMEM94Q12767 1356 aa6.87□□□□□ -1.31
VPS41-203ENST00000395969 MYCNP04198 464 aaPredicted RBP6.86□□□□□ -1.31
VPS41-203ENST00000395969 HOXC9P31274 260 aa6.86□□□□□ -1.31
VPS41-203ENST00000395969 GNAI1P63096 354 aa6.86□□□□□ -1.31
VPS41-203ENST00000395969 CENPQQ7L2Z9 268 aaPredicted RBP6.86□□□□□ -1.31
VPS41-203ENST00000395969 ARHGEF25Q86VW2 580 aa6.86□□□□□ -1.31
VPS41-203ENST00000395969 ATP10DQ9P241 1426 aa6.86□□□□□ -1.31
VPS41-203ENST00000395969 HDAC1Q13547 482 aaPredicted RBP6.86□□□□□ -1.31
VPS41-203ENST00000395969 GLIPR1L2Q4G1C9 344 aa6.86□□□□□ -1.31
VPS41-203ENST00000395969 SLC26A8Q96RN1 970 aa6.86□□□□□ -1.31
VPS41-203ENST00000395969 C1orf115Q9H7X2 142 aa6.86□□□□□ -1.31
VPS41-203ENST00000395969 TOGARAM1Q9Y4F4 1720 aa6.86□□□□□ -1.31
VPS41-203ENST00000395969 CHMP4BQ9H444 224 aaKnown RBP6.85□□□□□ -1.31
VPS41-203ENST00000395969 ROBO1Q9Y6N7 1651 aa6.85□□□□□ -1.31
VPS41-203ENST00000395969 CADPS2Q86UW7 1296 aa6.85□□□□□ -1.31
VPS41-203ENST00000395969 POLR3GLQ9BT43 218 aa6.85□□□□□ -1.31
VPS41-203ENST00000395969 DISP2A7MBM2 1401 aa6.84□□□□□ -1.31
VPS41-203ENST00000395969 TNS2Q63HR2 1409 aa6.84□□□□□ -1.31
VPS41-203ENST00000395969 MAP3K5Q99683 1374 aa6.84□□□□□ -1.31
VPS41-203ENST00000395969 GAS2L2Q8NHY3 880 aa6.84□□□□□ -1.31
VPS41-203ENST00000395969 BBXQ8WY36 941 aaPredicted RBP6.84□□□□□ -1.31
VPS41-203ENST00000395969 PTPRCP08575 1304 aa6.84□□□□□ -1.31
VPS41-203ENST00000395969 SPATA31A3Q5VYP0 1347 aa6.84□□□□□ -1.31
VPS41-203ENST00000395969 CDK11BP21127 795 aaKnown RBP6.84□□□□□ -1.31
VPS41-203ENST00000395969 MAPK8IP3Q9UPT6 1336 aa6.84□□□□□ -1.32
VPS41-203ENST00000395969 PSME1Q06323 249 aa6.83□□□□□ -1.32
VPS41-203ENST00000395969 EXOC6Q8TAG9 804 aa6.83□□□□□ -1.32
VPS41-203ENST00000395969 EMILIN1Q9Y6C2 1016 aa6.83□□□□□ -1.32
VPS41-203ENST00000395969 NPHP3Q7Z494 1330 aa6.83□□□□□ -1.32
VPS41-203ENST00000395969 U2AF1L5P0DN76 240 aaPredicted RBP6.83□□□□□ -1.32
VPS41-203ENST00000395969 U2AF1Q01081 240 aaKnown RBP eCLIP6.83□□□□□ -1.327e-7■□□□□ 9.7
VPS41-203ENST00000395969 LAMB2P55268 1798 aa6.83□□□□□ -1.32
VPS41-203ENST00000395969 VAMP4O75379 141 aa6.83□□□□□ -1.32
VPS41-203ENST00000395969 NCKAP5LQ9HCH0 1330 aa6.82□□□□□ -1.32
VPS41-203ENST00000395969 BCL9O00512 1426 aa6.82□□□□□ -1.32
VPS41-203ENST00000395969 PRKAR2BP31323 418 aa6.82□□□□□ -1.32
VPS41-203ENST00000395969 SPRYD3Q8NCJ5 442 aa6.82□□□□□ -1.32
VPS41-203ENST00000395969 ANKRD36CQ5JPF3 1778 aa6.82□□□□□ -1.32
VPS41-203ENST00000395969 COL5A2P05997 1499 aaPredicted RBP6.82□□□□□ -1.32
VPS41-203ENST00000395969 AMOTQ4VCS5 1084 aa6.82□□□□□ -1.32
VPS41-203ENST00000395969 INTS3Q68E01 1043 aaKnown RBP6.82□□□□□ -1.32
VPS41-203ENST00000395969 MRPL50Q8N5N7 158 aaKnown RBP6.82□□□□□ -1.32
VPS41-203ENST00000395969 THSD7AQ9UPZ6 1657 aa6.82□□□□□ -1.32
VPS41-203ENST00000395969 ARFGEF2Q9Y6D5 1785 aa6.82□□□□□ -1.32
VPS41-203ENST00000395969 KCPQ6ZWJ8 1503 aa6.82□□□□□ -1.32
VPS41-203ENST00000395969 SLC4A3P48751 1232 aa6.81□□□□□ -1.32
VPS41-203ENST00000395969 PHACTR3Q96KR7 559 aa6.81□□□□□ -1.32
VPS41-203ENST00000395969 CCDC9Q9Y3X0 531 aaKnown RBP6.81□□□□□ -1.32
VPS41-203ENST00000395969 ITGB4P16144 1822 aa6.81□□□□□ -1.32
VPS41-203ENST00000395969 RIPK4P57078 832 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms