RNA–Protein interactions for RNA: ENST00000380749.9

HMGN1-204, Transcript of high mobility group nucleosome binding domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN1, Length 1,383 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-204ENST00000380749 ZBTB7AO95365 584 aa23.97■■□□□ 1.43
HMGN1-204ENST00000380749 PDGFDQ9GZP0 370 aaPredicted RBP23.97■■□□□ 1.43
HMGN1-204ENST00000380749 INSRP06213 1382 aa23.96■■□□□ 1.43
HMGN1-204ENST00000380749 ZCRB1Q8TBF4 217 aaKnown RBP23.95■■□□□ 1.42
HMGN1-204ENST00000380749 UTRNP46939 3433 aa23.95■■□□□ 1.42
HMGN1-204ENST00000380749 CGNL1Q0VF96 1302 aa23.95■■□□□ 1.42
HMGN1-204ENST00000380749 DCAF8L1A6NGE4 600 aa23.94■■□□□ 1.42
HMGN1-204ENST00000380749 PKD1L3Q7Z443 1732 aa23.94■■□□□ 1.42
HMGN1-204ENST00000380749 RAPGEF4Q8WZA2 1011 aa23.93■■□□□ 1.42
HMGN1-204ENST00000380749 SYTL4Q96C24 671 aaPredicted RBP23.93■■□□□ 1.42
HMGN1-204ENST00000380749 NBPF6Q5VWK0 638 aa23.92■■□□□ 1.42
HMGN1-204ENST00000380749 NBPF4Q96M43 638 aa23.92■■□□□ 1.42
HMGN1-204ENST00000380749 MTFR1LQ9H019 292 aa23.92■■□□□ 1.42
HMGN1-204ENST00000380749 ITGB4P16144 1822 aa23.92■■□□□ 1.42
HMGN1-204ENST00000380749 SLC27A3Q5K4L6 730 aa23.91■■□□□ 1.42
HMGN1-204ENST00000380749 USHBP1Q8N6Y0 703 aa23.91■■□□□ 1.42
HMGN1-204ENST00000380749 CARD14Q9BXL6 1004 aa23.91■■□□□ 1.42
HMGN1-204ENST00000380749 ATF5Q9Y2D1 282 aaPredicted RBP23.91■■□□□ 1.42
HMGN1-204ENST00000380749 PTGER2P43116 358 aa23.9■■□□□ 1.42
HMGN1-204ENST00000380749 HSP90AB2PQ58FF8 381 aa23.9■■□□□ 1.42
HMGN1-204ENST00000380749 TATP17735 454 aaPredicted RBP23.89■■□□□ 1.41
HMGN1-204ENST00000380749 PRIM1P49642 420 aaKnown RBP23.89■■□□□ 1.41
HMGN1-204ENST00000380749 LRRC4BQ9NT99 713 aa23.89■■□□□ 1.41
HMGN1-204ENST00000380749 NSD2O96028 1365 aa23.89■■□□□ 1.41
HMGN1-204ENST00000380749 COL24A1Q17RW2 1714 aa23.88■■□□□ 1.41
HMGN1-204ENST00000380749 C5P01031 1676 aa23.88■■□□□ 1.41
HMGN1-204ENST00000380749 ZNF827Q17R98 1081 aa23.88■■□□□ 1.41
HMGN1-204ENST00000380749 CHD4Q14839 1912 aa23.87■■□□□ 1.41
HMGN1-204ENST00000380749 TAF1LQ8IZX4 1826 aa23.87■■□□□ 1.41
HMGN1-204ENST00000380749 TOGARAM1Q9Y4F4 1720 aa23.87■■□□□ 1.41
HMGN1-204ENST00000380749 PCDH11XQ9BZA7 1347 aa23.87■■□□□ 1.41
HMGN1-204ENST00000380749 PCDH11YQ9BZA8 1340 aa23.87■■□□□ 1.41
HMGN1-204ENST00000380749 EMILIN1Q9Y6C2 1016 aa23.85■■□□□ 1.41
HMGN1-204ENST00000380749 POLR3GLQ9BT43 218 aa23.84■■□□□ 1.41
HMGN1-204ENST00000380749 AKT1S1Q96B36 256 aa23.83■■□□□ 1.41
HMGN1-204ENST00000380749 NCAPD2Q15021 1401 aa23.83■■□□□ 1.41
HMGN1-204ENST00000380749 PPM1GO15355 546 aaPredicted RBP23.82■■□□□ 1.4
HMGN1-204ENST00000380749 GOLGB1Q14789 3259 aaKnown RBP23.82■■□□□ 1.4
HMGN1-204ENST00000380749 YY1P25490 414 aa23.81■■□□□ 1.4
HMGN1-204ENST00000380749 EIF4G2P78344 907 aaKnown RBP eCLIP23.81■■□□□ 1.41e-6■□□□□ 9.4
HMGN1-204ENST00000380749 SGIP1Q9BQI5 828 aa23.81■■□□□ 1.4
HMGN1-204ENST00000380749 FHDC1Q9C0D6 1143 aaPredicted RBP23.8■■□□□ 1.4
HMGN1-204ENST00000380749 CCNL1Q9UK58 526 aaPredicted RBP23.8■■□□□ 1.4
HMGN1-204ENST00000380749 CCER1Q8TC90 406 aaPredicted RBP23.79■■□□□ 1.4
HMGN1-204ENST00000380749 TFCP2L1Q9NZI6 479 aa23.79■■□□□ 1.4
HMGN1-204ENST00000380749 SLC16A10Q8TF71 515 aa23.78■■□□□ 1.4
HMGN1-204ENST00000380749 ARXQ96QS3 562 aa23.78■■□□□ 1.4
HMGN1-204ENST00000380749 WASHC2AQ641Q2 1341 aa23.78■■□□□ 1.4
HMGN1-204ENST00000380749 PNPLA7Q6ZV29 1317 aa23.78■■□□□ 1.4
HMGN1-204ENST00000380749 MAP3K5Q99683 1374 aa23.77■■□□□ 1.4
HMGN1-204ENST00000380749 KCNQ4P56696 695 aa23.77■■□□□ 1.4
HMGN1-204ENST00000380749 SYT17Q9BSW7 474 aa23.77■■□□□ 1.4
HMGN1-204ENST00000380749 HSPA5P11021 654 aaKnown RBP23.76■■□□□ 1.39
HMGN1-204ENST00000380749 POLD1P28340 1107 aa23.75■■□□□ 1.39
HMGN1-204ENST00000380749 PALLDQ8WX93 1383 aa23.74■■□□□ 1.39
HMGN1-204ENST00000380749 CYP27B1O15528 508 aa23.74■■□□□ 1.39
HMGN1-204ENST00000380749 HMGB2P26583 209 aaKnown RBP23.74■■□□□ 1.39
HMGN1-204ENST00000380749 SPG7Q9UQ90 795 aa23.73■■□□□ 1.39
HMGN1-204ENST00000380749 C4BP0C0L5 1744 aa23.73■■□□□ 1.39
HMGN1-204ENST00000380749 UBR3Q6ZT12 1888 aa23.73■■□□□ 1.39
HMGN1-204ENST00000380749 MPRIPQ6WCQ1 1025 aa23.72■■□□□ 1.39
HMGN1-204ENST00000380749 POLKQ9UBT6 870 aa23.72■■□□□ 1.39
HMGN1-204ENST00000380749 TNNT2P45379 298 aaPredicted RBP23.7■■□□□ 1.38
HMGN1-204ENST00000380749 EYA1Q99502 592 aa23.7■■□□□ 1.38
HMGN1-204ENST00000380749 PLEKHG2Q9H7P9 1386 aa23.7■■□□□ 1.38
HMGN1-204ENST00000380749 SMARCC1Q92922 1105 aaPredicted RBP23.69■■□□□ 1.38
HMGN1-204ENST00000380749 PANK3Q9H999 370 aa23.68■■□□□ 1.38
HMGN1-204ENST00000380749 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.68■■□□□ 1.388e-8■■□□□ 13
HMGN1-204ENST00000380749 KLHL34Q8N239 644 aa23.67■■□□□ 1.38
HMGN1-204ENST00000380749 MSH5O43196 834 aa23.66■■□□□ 1.38
HMGN1-204ENST00000380749 EIF4A2Q14240 407 aaKnown RBP23.66■■□□□ 1.38
HMGN1-204ENST00000380749 NKX1-1Q15270 411 aaPredicted RBP23.66■■□□□ 1.38
HMGN1-204ENST00000380749 COL23A1Q86Y22 540 aaPredicted RBP23.64■■□□□ 1.37
HMGN1-204ENST00000380749 IFNL2Q8IZJ0 200 aa23.64■■□□□ 1.37
HMGN1-204ENST00000380749 FLAD1Q8NFF5 587 aa23.64■■□□□ 1.37
HMGN1-204ENST00000380749 PIGBQ92521 554 aa23.63■■□□□ 1.37
HMGN1-204ENST00000380749 TMOD3Q9NYL9 352 aa23.63■■□□□ 1.37
HMGN1-204ENST00000380749 IGSF1Q8N6C5 1336 aa23.62■■□□□ 1.37
HMGN1-204ENST00000380749 AK7Q96M32 723 aa23.62■■□□□ 1.37
HMGN1-204ENST00000380749 PHKG2P15735 406 aa23.61■■□□□ 1.37
HMGN1-204ENST00000380749 ZNF831Q5JPB2 1677 aa23.6■■□□□ 1.37
HMGN1-204ENST00000380749 VIRMAQ69YN4 1812 aaKnown RBP23.6■■□□□ 1.37
HMGN1-204ENST00000380749 MORC1Q86VD1 984 aa23.6■■□□□ 1.37
HMGN1-204ENST00000380749 GPR162Q16538 588 aa23.58■■□□□ 1.37
HMGN1-204ENST00000380749 KNSTRNQ9Y448 316 aa23.58■■□□□ 1.37
HMGN1-204ENST00000380749 MSL1Q68DK7 614 aa23.57■■□□□ 1.36
HMGN1-204ENST00000380749 COL5A3P25940 1745 aaPredicted RBP23.57■■□□□ 1.36
HMGN1-204ENST00000380749 LOC102724428A0A0B4J2F2 783 aa23.56■■□□□ 1.36
HMGN1-204ENST00000380749 SIK1P57059 783 aa23.56■■□□□ 1.36
HMGN1-204ENST00000380749 PELP1Q8IZL8 1130 aaKnown RBP23.55■■□□□ 1.36
HMGN1-204ENST00000380749 SCN11AQ9UI33 1791 aa23.55■■□□□ 1.36
HMGN1-204ENST00000380749 HSP90AB1P08238 724 aaKnown RBP23.54■■□□□ 1.36
HMGN1-204ENST00000380749 PLEKHO1Q53GL0 409 aaPredicted RBP23.53■■□□□ 1.36
HMGN1-204ENST00000380749 NLGN2Q8NFZ4 835 aa23.53■■□□□ 1.36
HMGN1-204ENST00000380749 PHF14O94880 888 aa23.52■■□□□ 1.36
HMGN1-204ENST00000380749 ASAP1Q9ULH1 1129 aa23.52■■□□□ 1.36
HMGN1-204ENST00000380749 SSFA2P28290 1259 aa23.52■■□□□ 1.36
HMGN1-204ENST00000380749 AMOTQ4VCS5 1084 aa23.52■■□□□ 1.36
HMGN1-204ENST00000380749 ZNF784Q8NCA9 323 aaPredicted RBP23.52■■□□□ 1.36
HMGN1-204ENST00000380749 LINC00116Q8NCU8 138 aa23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms