RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 SLC4A2P04920 1241 aa11.23□□□□□ -0.61
SNX1-202ENST00000380285 BRPF1P55201 1214 aaPredicted RBP11.23□□□□□ -0.61
SNX1-202ENST00000380285 HSP90AB3PQ58FF7 597 aa11.23□□□□□ -0.61
SNX1-202ENST00000380285 SLC26A8Q96RN1 970 aa11.23□□□□□ -0.61
SNX1-202ENST00000380285 FBXO3Q9UK99 471 aa11.23□□□□□ -0.61
SNX1-202ENST00000380285 PAXBP1Q9Y5B6 917 aa11.23□□□□□ -0.61
SNX1-202ENST00000380285 SYCE3A1L190 88 aa11.23□□□□□ -0.61
SNX1-202ENST00000380285 HMGB1P09429 215 aaKnown RBP11.23□□□□□ -0.61
SNX1-202ENST00000380285 TTC39AQ5SRH9 613 aa11.23□□□□□ -0.61
SNX1-202ENST00000380285 CABP2Q9NPB3 220 aa11.23□□□□□ -0.61
SNX1-202ENST00000380285 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.23□□□□□ -0.613e-11■■■■■ 99.4
SNX1-202ENST00000380285 CUL7Q14999 1698 aa11.23□□□□□ -0.61
SNX1-202ENST00000380285 JAKMIP3Q5VZ66 844 aa11.23□□□□□ -0.61
SNX1-202ENST00000380285 KIF5CO60282 957 aa11.23□□□□□ -0.61
SNX1-202ENST00000380285 TUBB4AP04350 444 aa11.23□□□□□ -0.61
SNX1-202ENST00000380285 LRPPRCP42704 1394 aaKnown RBP11.23□□□□□ -0.61
SNX1-202ENST00000380285 CCDC102AQ96A19 550 aa11.23□□□□□ -0.61
SNX1-202ENST00000380285 DNAJC2Q99543 621 aaKnown RBP11.23□□□□□ -0.61
SNX1-202ENST00000380285 BMP2KQ9NSY1 1161 aaPredicted RBP11.23□□□□□ -0.61
SNX1-202ENST00000380285 TROQ12816 1431 aaPredicted RBP11.23□□□□□ -0.61
SNX1-202ENST00000380285 HDGFL1Q5TGJ6 251 aa11.22□□□□□ -0.61
SNX1-202ENST00000380285 PTPN23Q9H3S7 1636 aa11.22□□□□□ -0.61
SNX1-202ENST00000380285 GBP2P32456 591 aaPredicted RBP11.22□□□□□ -0.61
SNX1-202ENST00000380285 NCAPD3P42695 1498 aa11.22□□□□□ -0.61
SNX1-202ENST00000380285 PHAXQ9H814 394 aaKnown RBP11.22□□□□□ -0.61
SNX1-202ENST00000380285 DDX19AQ9NUU7 478 aaKnown RBP11.22□□□□□ -0.61
SNX1-202ENST00000380285 RAD21O60216 631 aa11.22□□□□□ -0.61
SNX1-202ENST00000380285 KRT18P05783 430 aaKnown RBP11.22□□□□□ -0.61
SNX1-202ENST00000380285 NEFHP12036 1026 aa11.22□□□□□ -0.61
SNX1-202ENST00000380285 GIMAP7Q8NHV1 300 aa11.22□□□□□ -0.61
SNX1-202ENST00000380285 TAF4BQ92750 862 aa11.21□□□□□ -0.61
SNX1-202ENST00000380285 CASQ1P31415 396 aa11.21□□□□□ -0.61
SNX1-202ENST00000380285 KIAA1328Q86T90 577 aa11.21□□□□□ -0.61
SNX1-202ENST00000380285 ZNF644Q9H582 1327 aaPredicted RBP11.21□□□□□ -0.61
SNX1-202ENST00000380285 KRI1Q8N9T8 703 aaKnown RBP11.21□□□□□ -0.62
SNX1-202ENST00000380285 GLRX3O76003 335 aaKnown RBP11.21□□□□□ -0.62
SNX1-202ENST00000380285 TUBB4BP68371 445 aa11.21□□□□□ -0.62
SNX1-202ENST00000380285 AIMP1Q12904 312 aaKnown RBP11.21□□□□□ -0.62
SNX1-202ENST00000380285 JAKMIP1Q96N16 626 aaKnown RBP11.21□□□□□ -0.62
SNX1-202ENST00000380285 GOLGA6L10A0A0M3HER8 536 aa11.2□□□□□ -0.62
SNX1-202ENST00000380285 ENOX2Q16206 610 aaKnown RBP11.2□□□□□ -0.62
SNX1-202ENST00000380285 U3KPZ7 1027 aaPredicted RBP11.2□□□□□ -0.62
SNX1-202ENST00000380285 CEBPZQ03701 1054 aaKnown RBP11.2□□□□□ -0.62
SNX1-202ENST00000380285 FGFR1OPO95684 399 aaKnown RBP11.2□□□□□ -0.62
SNX1-202ENST00000380285 CFAP100Q494V2 611 aa11.2□□□□□ -0.62
SNX1-202ENST00000380285 KIF1BPQ96EK5 621 aa11.2□□□□□ -0.62
SNX1-202ENST00000380285 C1orf115Q9H7X2 142 aa11.2□□□□□ -0.62
SNX1-202ENST00000380285 HS1BP3Q53T59 392 aa11.2□□□□□ -0.62
SNX1-202ENST00000380285 RAD54L2Q9Y4B4 1467 aa11.2□□□□□ -0.62
SNX1-202ENST00000380285 SLC52A1Q9NWF4 448 aa11.19□□□□□ -0.62
SNX1-202ENST00000380285 KLHL40Q2TBA0 621 aa11.19□□□□□ -0.62
SNX1-202ENST00000380285 NFE2L2Q16236 605 aa11.19□□□□□ -0.62
SNX1-202ENST00000380285 PYM1Q9BRP8 204 aaKnown RBP11.19□□□□□ -0.62
SNX1-202ENST00000380285 POLR3GO15318 223 aaPredicted RBP11.19□□□□□ -0.62
SNX1-202ENST00000380285 DESP17661 470 aa11.19□□□□□ -0.62
SNX1-202ENST00000380285 TSR2Q969E8 191 aaKnown RBP11.19□□□□□ -0.62
SNX1-202ENST00000380285 NSD2O96028 1365 aa11.19□□□□□ -0.62
SNX1-202ENST00000380285 NLRP6P59044 892 aa11.19□□□□□ -0.62
SNX1-202ENST00000380285 SPA17Q15506 151 aa11.19□□□□□ -0.62
SNX1-202ENST00000380285 CCDC196A0A1B0GTZ2 297 aa11.18□□□□□ -0.62
SNX1-202ENST00000380285 CASTP20810 708 aaKnown RBP11.18□□□□□ -0.62
SNX1-202ENST00000380285 CLCN1P35523 988 aa11.18□□□□□ -0.62
SNX1-202ENST00000380285 CCDC91Q7Z6B0 441 aa11.18□□□□□ -0.62
SNX1-202ENST00000380285 LRRFIP2Q9Y608 721 aaKnown RBP11.18□□□□□ -0.62
SNX1-202ENST00000380285 NAIPQ13075 1403 aa11.18□□□□□ -0.62
SNX1-202ENST00000380285 CCDC171Q6TFL3 1326 aa11.18□□□□□ -0.62
SNX1-202ENST00000380285 WWC2Q6AWC2 1192 aa11.18□□□□□ -0.62
SNX1-202ENST00000380285 NCOA1Q15788 1441 aa11.18□□□□□ -0.62
SNX1-202ENST00000380285 BMS1Q14692 1282 aaKnown RBP11.18□□□□□ -0.62
SNX1-202ENST00000380285 CETN2P41208 172 aa11.18□□□□□ -0.62
SNX1-202ENST00000380285 SOGA3Q5TF21 947 aa11.18□□□□□ -0.62
SNX1-202ENST00000380285 CLIP2Q9UDT6 1046 aa11.18□□□□□ -0.62
SNX1-202ENST00000380285 BMP2KLQ5H9B9 411 aa11.18□□□□□ -0.62
SNX1-202ENST00000380285 CFAP70Q5T0N1 1121 aa11.18□□□□□ -0.62
SNX1-202ENST00000380285 UBE2Q2Q8WVN8 375 aa11.18□□□□□ -0.62
SNX1-202ENST00000380285 DYDC1Q8WWB3 177 aa11.18□□□□□ -0.62
SNX1-202ENST00000380285 NBPF8Q3BBV2 869 aa11.17□□□□□ -0.62
SNX1-202ENST00000380285 CCDC150Q8NCX0 1101 aa11.17□□□□□ -0.62
SNX1-202ENST00000380285 EIF5P55010 431 aaKnown RBP11.17□□□□□ -0.62
SNX1-202ENST00000380285 AACSQ86V21 672 aa11.17□□□□□ -0.62
SNX1-202ENST00000380285 VPS36Q86VN1 386 aa11.17□□□□□ -0.62
SNX1-202ENST00000380285 PPP1R12BO60237 982 aaPredicted RBP11.17□□□□□ -0.62
SNX1-202ENST00000380285 TOP1P11387 765 aaKnown RBP11.17□□□□□ -0.62
SNX1-202ENST00000380285 MX1P20591 662 aa11.17□□□□□ -0.62
SNX1-202ENST00000380285 STX1AQ16623 288 aa11.17□□□□□ -0.62
SNX1-202ENST00000380285 SRGAP3O43295 1099 aa11.17□□□□□ -0.62
SNX1-202ENST00000380285 TMPOP42166 694 aaKnown RBP11.17□□□□□ -0.62
SNX1-202ENST00000380285 TNPO1Q92973 898 aaKnown RBP11.17□□□□□ -0.62
SNX1-202ENST00000380285 NAA15Q9BXJ9 866 aaKnown RBP11.17□□□□□ -0.62
SNX1-202ENST00000380285 LIMCH1Q9UPQ0 1083 aa11.17□□□□□ -0.62
SNX1-202ENST00000380285 TNNT1P13805 278 aa11.17□□□□□ -0.62
SNX1-202ENST00000380285 ATP2B1P20020 1258 aa11.16□□□□□ -0.62
SNX1-202ENST00000380285 TMEM57Q8N5G2 664 aa11.16□□□□□ -0.62
SNX1-202ENST00000380285 TANGO6Q9C0B7 1094 aa11.16□□□□□ -0.62
SNX1-202ENST00000380285 CNNM1Q9NRU3 951 aa11.16□□□□□ -0.62
SNX1-202ENST00000380285 LUZP1Q86V48 1076 aa11.16□□□□□ -0.62
SNX1-202ENST00000380285 EHBP1Q8NDI1 1231 aa11.16□□□□□ -0.62
SNX1-202ENST00000380285 TBC1D2Q9BYX2 928 aa11.16□□□□□ -0.62
SNX1-202ENST00000380285 PTPRCP08575 1304 aa11.16□□□□□ -0.62
SNX1-202ENST00000380285 RARSP54136 660 aaKnown RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 702.6 ms