RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 XIRP1Q702N8 1843 aaKnown RBP10.15□□□□□ -0.79
VPS36-201ENST00000378060 LETM1O95202 739 aaPredicted RBP10.15□□□□□ -0.79
VPS36-201ENST00000378060 CDK19Q9BWU1 502 aa10.15□□□□□ -0.79
VPS36-201ENST00000378060 BCAR3O75815 825 aa10.14□□□□□ -0.79
VPS36-201ENST00000378060 G3BP1Q13283 466 aaKnown RBP eCLIP10.14□□□□□ -0.79
VPS36-201ENST00000378060 RASSF8Q8NHQ8 419 aa10.14□□□□□ -0.79
VPS36-201ENST00000378060 BICD2Q8TD16 824 aa10.14□□□□□ -0.79
VPS36-201ENST00000378060 ZNF428Q96B54 188 aa10.14□□□□□ -0.79
VPS36-201ENST00000378060 CWC22Q9HCG8 908 aaKnown RBP10.14□□□□□ -0.79
VPS36-201ENST00000378060 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.14□□□□□ -0.79
VPS36-201ENST00000378060 MYOM1P52179 1685 aa10.14□□□□□ -0.79
VPS36-201ENST00000378060 CCDC173Q0VFZ6 552 aa10.14□□□□□ -0.79
VPS36-201ENST00000378060 TSR1Q2NL82 804 aaKnown RBP10.14□□□□□ -0.79
VPS36-201ENST00000378060 DLC1Q96QB1 1528 aa10.14□□□□□ -0.79
VPS36-201ENST00000378060 TSPYL4Q9UJ04 414 aa10.14□□□□□ -0.79
VPS36-201ENST00000378060 SASS6Q6UVJ0 657 aa10.14□□□□□ -0.79
VPS36-201ENST00000378060 TMEM94Q12767 1356 aa10.13□□□□□ -0.79
VPS36-201ENST00000378060 VPS37CA5D8V6 355 aaPredicted RBP10.13□□□□□ -0.79
VPS36-201ENST00000378060 NWD1Q149M9 1564 aa10.13□□□□□ -0.79
VPS36-201ENST00000378060 PTCH1Q13635 1447 aa10.13□□□□□ -0.79
VPS36-201ENST00000378060 SYNE3Q6ZMZ3 975 aa10.13□□□□□ -0.79
VPS36-201ENST00000378060 SLC12A5Q9H2X9 1139 aa10.13□□□□□ -0.79
VPS36-201ENST00000378060 TOMM22Q9NS69 142 aa10.13□□□□□ -0.79
VPS36-201ENST00000378060 HMOX1P09601 288 aa10.13□□□□□ -0.79
VPS36-201ENST00000378060 EIF2S2P20042 333 aaKnown RBP10.13□□□□□ -0.79
VPS36-201ENST00000378060 MVPQ14764 893 aaKnown RBP10.13□□□□□ -0.79
VPS36-201ENST00000378060 PRR36Q9H6K5 1346 aa10.12□□□□□ -0.79
VPS36-201ENST00000378060 ATF7IPQ6VMQ6 1270 aa10.12□□□□□ -0.79
VPS36-201ENST00000378060 NOC3LQ8WTT2 800 aaKnown RBP10.12□□□□□ -0.79
VPS36-201ENST00000378060 HMGN5P82970 282 aaKnown RBP10.12□□□□□ -0.79
VPS36-201ENST00000378060 SLFN5Q08AF3 891 aa10.12□□□□□ -0.79
VPS36-201ENST00000378060 CCDC73Q6ZRK6 1079 aa10.12□□□□□ -0.79
VPS36-201ENST00000378060 CPLX1O14810 134 aa10.12□□□□□ -0.79
VPS36-201ENST00000378060 AKAP17AQ02040 695 aaKnown RBP10.12□□□□□ -0.79
VPS36-201ENST00000378060 TPD52L1Q16890 204 aaPredicted RBP10.12□□□□□ -0.79
VPS36-201ENST00000378060 HOOK1Q9UJC3 728 aaKnown RBP10.12□□□□□ -0.79
VPS36-201ENST00000378060 FAM135BQ49AJ0 1406 aa10.12□□□□□ -0.79
VPS36-201ENST00000378060 PDCP20941 246 aa10.11□□□□□ -0.79
VPS36-201ENST00000378060 MCM4P33991 863 aa10.11□□□□□ -0.79
VPS36-201ENST00000378060 UBTFL1P0CB47 393 aaPredicted RBP10.11□□□□□ -0.79
VPS36-201ENST00000378060 TRIM29Q14134 588 aa10.11□□□□□ -0.79
VPS36-201ENST00000378060 CAVIN1Q6NZI2 390 aaKnown RBP10.11□□□□□ -0.79
VPS36-201ENST00000378060 PIK3R4Q99570 1358 aa10.11□□□□□ -0.79
VPS36-201ENST00000378060 WASLO00401 505 aaPredicted RBP10.11□□□□□ -0.79
VPS36-201ENST00000378060 NEK4P51957 841 aa10.11□□□□□ -0.79
VPS36-201ENST00000378060 IL27Q8NEV9 243 aa10.11□□□□□ -0.79
VPS36-201ENST00000378060 USP32Q8NFA0 1604 aa10.11□□□□□ -0.79
VPS36-201ENST00000378060 PSMA5P28066 241 aa10.1□□□□□ -0.79
VPS36-201ENST00000378060 ZNF592Q92610 1267 aa10.1□□□□□ -0.79
VPS36-201ENST00000378060 PRKAR2BP31323 418 aa10.1□□□□□ -0.79
VPS36-201ENST00000378060 TWISTNBQ3B726 338 aaPredicted RBP10.1□□□□□ -0.79
VPS36-201ENST00000378060 R3HCC1Q9Y3T6 440 aaKnown RBP10.1□□□□□ -0.79
VPS36-201ENST00000378060 LRRC7Q96NW7 1537 aa10.1□□□□□ -0.79
VPS36-201ENST00000378060 DDX17Q92841 729 aaKnown RBP10.1□□□□□ -0.79
VPS36-201ENST00000378060 CABP1Q9NZU7 370 aa10.1□□□□□ -0.79
VPS36-201ENST00000378060 K7ELQ4 463 aaPredicted RBP10.1□□□□□ -0.79
VPS36-201ENST00000378060 MSH5O43196 834 aa10.1□□□□□ -0.79
VPS36-201ENST00000378060 TEX35Q5T0J7 233 aa10.1□□□□□ -0.79
VPS36-201ENST00000378060 TTC5Q8N0Z6 440 aa10.1□□□□□ -0.79
VPS36-201ENST00000378060 CNTROBQ8N137 903 aa10.1□□□□□ -0.79
VPS36-201ENST00000378060 CLASRPQ8N2M8 674 aaKnown RBP10.1□□□□□ -0.79
VPS36-201ENST00000378060 TRDNQ13061 729 aa10.09□□□□□ -0.79
VPS36-201ENST00000378060 ZNF771Q7L3S4 317 aaPredicted RBP10.09□□□□□ -0.79
VPS36-201ENST00000378060 NOB1Q9ULX3 412 aaKnown RBP10.09□□□□□ -0.79
VPS36-201ENST00000378060 A0A0U1RQG5 324 aaPredicted RBP10.09□□□□□ -0.79
VPS36-201ENST00000378060 CCDC70Q6NSX1 233 aa10.09□□□□□ -0.79
VPS36-201ENST00000378060 HOMER1Q86YM7 354 aa10.09□□□□□ -0.79
VPS36-201ENST00000378060 ANKRD20A12PQ8NF67 263 aa10.09□□□□□ -0.79
VPS36-201ENST00000378060 AMER1Q5JTC6 1135 aaPredicted RBP10.09□□□□□ -0.79
VPS36-201ENST00000378060 CCDC30Q5VVM6 783 aa10.09□□□□□ -0.79
VPS36-201ENST00000378060 CREBRFQ8IUR6 639 aa10.09□□□□□ -0.79
VPS36-201ENST00000378060 GRPEL1Q9HAV7 217 aa10.09□□□□□ -0.79
VPS36-201ENST00000378060 IPO7O95373 1038 aaKnown RBP10.08□□□□□ -0.8
VPS36-201ENST00000378060 XPCQ01831 940 aaPredicted RBP10.08□□□□□ -0.8
VPS36-201ENST00000378060 GAS2L2Q8NHY3 880 aa10.08□□□□□ -0.8
VPS36-201ENST00000378060 SBNO2Q9Y2G9 1366 aa10.08□□□□□ -0.8
VPS36-201ENST00000378060 PRPF40AO75400 957 aaKnown RBP10.08□□□□□ -0.8
VPS36-201ENST00000378060 NUDT16Q96DE0 195 aaKnown RBP10.08□□□□□ -0.8
VPS36-201ENST00000378060 NAT10Q9H0A0 1025 aaKnown RBP10.08□□□□□ -0.8
VPS36-201ENST00000378060 TSPY26PQ9H489 355 aa10.08□□□□□ -0.8
VPS36-201ENST00000378060 ARGLU1Q9NWB6 273 aaPredicted RBP10.08□□□□□ -0.8
VPS36-201ENST00000378060 IFT57Q9NWB7 429 aa10.08□□□□□ -0.8
VPS36-201ENST00000378060 ATP7BP35670 1465 aa10.08□□□□□ -0.8
VPS36-201ENST00000378060 CCAR2Q8N163 923 aaKnown RBP10.08□□□□□ -0.8
VPS36-201ENST00000378060 ORAI2Q96SN7 254 aa10.08□□□□□ -0.8
VPS36-201ENST00000378060 NKTRP30414 1462 aaKnown RBP10.08□□□□□ -0.8
VPS36-201ENST00000378060 HIP1O00291 1037 aa10.08□□□□□ -0.8
VPS36-201ENST00000378060 RNF214Q8ND24 703 aa10.08□□□□□ -0.8
VPS36-201ENST00000378060 ADGRL3Q9HAR2 1447 aa10.08□□□□□ -0.8
VPS36-201ENST00000378060 CHD1LQ86WJ1 897 aa10.07□□□□□ -0.8
VPS36-201ENST00000378060 NECTIN2Q92692 538 aa10.07□□□□□ -0.8
VPS36-201ENST00000378060 DMRT2Q9Y5R5 561 aa10.07□□□□□ -0.8
VPS36-201ENST00000378060 WWC1Q8IX03 1113 aa10.07□□□□□ -0.8
VPS36-201ENST00000378060 TSR2Q969E8 191 aaKnown RBP10.07□□□□□ -0.8
VPS36-201ENST00000378060 PPIP5K1Q6PFW1 1433 aa10.07□□□□□ -0.8
VPS36-201ENST00000378060 GNAI2P04899 355 aa10.07□□□□□ -0.8
VPS36-201ENST00000378060 CARD14Q9BXL6 1004 aa10.07□□□□□ -0.8
VPS36-201ENST00000378060 ADGRB2O60241 1585 aa10.07□□□□□ -0.8
VPS36-201ENST00000378060 FMN2Q9NZ56 1722 aa10.07□□□□□ -0.8
VPS36-201ENST00000378060 ESPNB1AK53 854 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms