RNA–Protein interactions for RNA: ENST00000374198.4

PRPF4-201, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PRPF4, Length 2,787 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-201ENST00000374198 PTPRTO14522 1441 aa15.73■□□□□ 0.11
PRPF4-201ENST00000374198 GCC1Q96CN9 775 aa15.73■□□□□ 0.11
PRPF4-201ENST00000374198 SLC52A1Q9NWF4 448 aa15.73■□□□□ 0.11
PRPF4-201ENST00000374198 GABPB1Q06547 395 aaPredicted RBP15.72■□□□□ 0.11
PRPF4-201ENST00000374198 UVSSAQ2YD98 709 aa15.72■□□□□ 0.11
PRPF4-201ENST00000374198 RIOK3O14730 519 aaKnown RBP15.72■□□□□ 0.11
PRPF4-201ENST00000374198 CTIFO43310 598 aaKnown RBP15.72■□□□□ 0.11
PRPF4-201ENST00000374198 PIK3C2BO00750 1634 aa15.71■□□□□ 0.11
PRPF4-201ENST00000374198 CHGAP10645 457 aaKnown RBP15.71■□□□□ 0.11
PRPF4-201ENST00000374198 SYAP1Q96A49 352 aaPredicted RBP15.71■□□□□ 0.11
PRPF4-201ENST00000374198 CHAF1AQ13111 956 aaPredicted RBP15.71■□□□□ 0.11
PRPF4-201ENST00000374198 FAM184AQ8NB25 1140 aa15.71■□□□□ 0.11
PRPF4-201ENST00000374198 IRX5P78411 483 aaPredicted RBP15.7■□□□□ 0.1
PRPF4-201ENST00000374198 MORC1Q86VD1 984 aa15.7■□□□□ 0.1
PRPF4-201ENST00000374198 UBR1Q8IWV7 1749 aa15.7■□□□□ 0.1
PRPF4-201ENST00000374198 PLCD3Q8N3E9 789 aa15.7■□□□□ 0.1
PRPF4-201ENST00000374198 USP25Q9UHP3 1055 aa15.7■□□□□ 0.1
PRPF4-201ENST00000374198 IPO8O15397 1037 aaKnown RBP15.7■□□□□ 0.1
PRPF4-201ENST00000374198 USP26Q9BXU7 913 aa15.7■□□□□ 0.1
PRPF4-201ENST00000374198 ST18O60284 1047 aa15.69■□□□□ 0.1
PRPF4-201ENST00000374198 PHF14O94880 888 aa15.69■□□□□ 0.1
PRPF4-201ENST00000374198 ADCY5O95622 1261 aa15.69■□□□□ 0.1
PRPF4-201ENST00000374198 EID1Q9Y6B2 187 aa15.69■□□□□ 0.1
PRPF4-201ENST00000374198 PPIP5K1Q6PFW1 1433 aa15.68■□□□□ 0.1
PRPF4-201ENST00000374198 KCNJ4P48050 445 aa15.68■□□□□ 0.1
PRPF4-201ENST00000374198 TXNDC2Q86VQ3 553 aa15.68■□□□□ 0.1
PRPF4-201ENST00000374198 SLFN14P0C7P3 912 aa15.68■□□□□ 0.1
PRPF4-201ENST00000374198 CFAP44Q96MT7 982 aa15.68■□□□□ 0.1
PRPF4-201ENST00000374198 FOXD4L5Q5VV16 416 aaPredicted RBP15.67■□□□□ 0.1
PRPF4-201ENST00000374198 FOXD4L4Q8WXT5 416 aaPredicted RBP15.67■□□□□ 0.1
PRPF4-201ENST00000374198 KIAA1524Q8TCG1 905 aa15.67■□□□□ 0.1
PRPF4-201ENST00000374198 GSPT1P15170 499 aaKnown RBP15.66■□□□□ 0.1
PRPF4-201ENST00000374198 NPHP4O75161 1426 aaPredicted RBP15.66■□□□□ 0.1
PRPF4-201ENST00000374198 CCDC66A2RUB6 948 aa15.66■□□□□ 0.1
PRPF4-201ENST00000374198 SLC20A2Q08357 652 aa15.66■□□□□ 0.1
PRPF4-201ENST00000374198 CTNNA3Q9UI47 895 aa15.66■□□□□ 0.1
PRPF4-201ENST00000374198 MTHFSP49914 203 aa15.65■□□□□ 0.1
PRPF4-201ENST00000374198 CFAP53Q96M91 514 aa15.65■□□□□ 0.1
PRPF4-201ENST00000374198 ADGRB3O60242 1522 aa15.65■□□□□ 0.1
PRPF4-201ENST00000374198 CLTCL1P53675 1640 aa15.65■□□□□ 0.1
PRPF4-201ENST00000374198 ABCC11Q96J66 1382 aa15.65■□□□□ 0.1
PRPF4-201ENST00000374198 TMEM2Q9UHN6 1383 aa15.65■□□□□ 0.1
PRPF4-201ENST00000374198 NEURL4Q96JN8 1562 aa15.65■□□□□ 0.1
PRPF4-201ENST00000374198 LTKP29376 864 aa15.64■□□□□ 0.09
PRPF4-201ENST00000374198 NCBP1Q09161 790 aaKnown RBP15.64■□□□□ 0.09
PRPF4-201ENST00000374198 ANKRD36BQ8N2N9 1353 aa15.64■□□□□ 0.09
PRPF4-201ENST00000374198 DNAJC2Q99543 621 aaKnown RBP15.64■□□□□ 0.09
PRPF4-201ENST00000374198 DDX41Q9UJV9 622 aaKnown RBP15.64■□□□□ 0.09
PRPF4-201ENST00000374198 ZNF335Q9H4Z2 1342 aaPredicted RBP15.64■□□□□ 0.09
PRPF4-201ENST00000374198 BRD1O95696 1058 aa15.64■□□□□ 0.09
PRPF4-201ENST00000374198 SYCP1Q15431 976 aa15.64■□□□□ 0.09
PRPF4-201ENST00000374198 SLIT1O75093 1534 aa15.63■□□□□ 0.09
PRPF4-201ENST00000374198 ZBTB7BO15156 539 aaPredicted RBP15.63■□□□□ 0.09
PRPF4-201ENST00000374198 U2AF1L5P0DN76 240 aaPredicted RBP15.63■□□□□ 0.09
PRPF4-201ENST00000374198 U2AF1Q01081 240 aaKnown RBP eCLIP15.63■□□□□ 0.09
PRPF4-201ENST00000374198 CERKQ8TCT0 537 aa15.63■□□□□ 0.09
PRPF4-201ENST00000374198 ADGRB2O60241 1585 aa15.63■□□□□ 0.09
PRPF4-201ENST00000374198 ARHGAP23Q9P227 1491 aa15.63■□□□□ 0.09
PRPF4-201ENST00000374198 TIGD1Q96MW7 591 aa15.63■□□□□ 0.09
PRPF4-201ENST00000374198 SPHKAPQ2M3C7 1700 aa15.63■□□□□ 0.09
PRPF4-201ENST00000374198 NSD3Q9BZ95 1437 aa15.62■□□□□ 0.09
PRPF4-201ENST00000374198 SENP3Q9H4L4 574 aaPredicted RBP15.62■□□□□ 0.09
PRPF4-201ENST00000374198 PYCARDQ9ULZ3 195 aa15.62■□□□□ 0.09
PRPF4-201ENST00000374198 MORC2Q9Y6X9 1032 aaPredicted RBP15.62■□□□□ 0.09
PRPF4-201ENST00000374198 MED14O60244 1454 aa15.62■□□□□ 0.09
PRPF4-201ENST00000374198 TERF2Q15554 542 aa15.62■□□□□ 0.09
PRPF4-201ENST00000374198 INTS3Q68E01 1043 aaKnown RBP15.62■□□□□ 0.09
PRPF4-201ENST00000374198 KDM4AO75164 1064 aa15.61■□□□□ 0.09
PRPF4-201ENST00000374198 PLEKHM2Q8IWE5 1019 aa15.61■□□□□ 0.09
PRPF4-201ENST00000374198 KCNF1Q9H3M0 494 aa15.61■□□□□ 0.09
PRPF4-201ENST00000374198 C1orf115Q9H7X2 142 aa15.61■□□□□ 0.09
PRPF4-201ENST00000374198 HDGFP51858 240 aaKnown RBP15.61■□□□□ 0.09
PRPF4-201ENST00000374198 SIRT2Q8IXJ6 389 aa15.61■□□□□ 0.09
PRPF4-201ENST00000374198 TPM3P06753 285 aa15.6■□□□□ 0.09
PRPF4-201ENST00000374198 VGFO15240 615 aaPredicted RBP15.6■□□□□ 0.09
PRPF4-201ENST00000374198 GADD45BO75293 160 aaPredicted RBP15.6■□□□□ 0.09
PRPF4-201ENST00000374198 ALDH1L2Q3SY69 923 aa15.6■□□□□ 0.09
PRPF4-201ENST00000374198 TTC22Q5TAA0 569 aa15.6■□□□□ 0.09
PRPF4-201ENST00000374198 TRIM35Q9UPQ4 493 aa15.6■□□□□ 0.09
PRPF4-201ENST00000374198 TMEM131LA2VDJ0 1609 aa15.6■□□□□ 0.09
PRPF4-201ENST00000374198 MYO5BQ9ULV0 1848 aa15.59■□□□□ 0.09
PRPF4-201ENST00000374198 IL16Q14005 1332 aa15.59■□□□□ 0.09
PRPF4-201ENST00000374198 HCLS1P14317 486 aaPredicted RBP15.59■□□□□ 0.09
PRPF4-201ENST00000374198 NUTM2DQ5VT03 806 aaPredicted RBP15.59■□□□□ 0.09
PRPF4-201ENST00000374198 RIMS2Q9UQ26 1411 aa15.58■□□□□ 0.09
PRPF4-201ENST00000374198 TMPOP42166 694 aaKnown RBP15.58■□□□□ 0.08
PRPF4-201ENST00000374198 TMX3Q96JJ7 454 aa15.58■□□□□ 0.08
PRPF4-201ENST00000374198 TRPM2O94759 1503 aa15.58■□□□□ 0.08
PRPF4-201ENST00000374198 TULP2O00295 520 aa15.58■□□□□ 0.08
PRPF4-201ENST00000374198 CCDC183Q5T5S1 534 aa15.58■□□□□ 0.08
PRPF4-201ENST00000374198 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.57■□□□□ 0.08
PRPF4-201ENST00000374198 KIF18AQ8NI77 898 aa15.57■□□□□ 0.08
PRPF4-201ENST00000374198 MAPK8IP2Q13387 824 aaPredicted RBP15.57■□□□□ 0.08
PRPF4-201ENST00000374198 USP48Q86UV5 1035 aa15.57■□□□□ 0.08
PRPF4-201ENST00000374198 GDPD2Q9HCC8 539 aa15.57■□□□□ 0.08
PRPF4-201ENST00000374198 CALCOCO1Q9P1Z2 691 aa15.57■□□□□ 0.08
PRPF4-201ENST00000374198 LTBP4Q8N2S1 1624 aa15.56■□□□□ 0.08
PRPF4-201ENST00000374198 PAXIP1Q6ZW49 1069 aaPredicted RBP15.56■□□□□ 0.08
PRPF4-201ENST00000374198 ILDR1Q86SU0 546 aaPredicted RBP15.56■□□□□ 0.08
PRPF4-201ENST00000374198 SMTNL1A8MU46 457 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms