RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 EMILIN1Q9Y6C2 1016 aa11.08□□□□□ -0.64
SNRNP40-202ENST00000373720 NPHP4O75161 1426 aaPredicted RBP11.08□□□□□ -0.64
SNRNP40-202ENST00000373720 EIF4A2Q14240 407 aaKnown RBP11.07□□□□□ -0.64
SNRNP40-202ENST00000373720 MST1RQ04912 1400 aa11.07□□□□□ -0.64
SNRNP40-202ENST00000373720 DCCP43146 1447 aa11.06□□□□□ -0.64
SNRNP40-202ENST00000373720 NWD1Q149M9 1564 aa11.06□□□□□ -0.64
SNRNP40-202ENST00000373720 RGPD1P0DJD0 1748 aa11.06□□□□□ -0.64
SNRNP40-202ENST00000373720 PTPRCP08575 1304 aa11.06□□□□□ -0.64
SNRNP40-202ENST00000373720 SENP3-EIF4A1A0A087X0R7 540 aa11.05□□□□□ -0.64
SNRNP40-202ENST00000373720 VAMP4O75379 141 aa11.05□□□□□ -0.64
SNRNP40-202ENST00000373720 SSH1Q8WYL5 1049 aa11.05□□□□□ -0.64
SNRNP40-202ENST00000373720 RTF1Q92541 710 aaKnown RBP11.05□□□□□ -0.64
SNRNP40-202ENST00000373720 ZBTB47Q9UFB7 747 aaPredicted RBP11.05□□□□□ -0.64
SNRNP40-202ENST00000373720 PHF8Q9UPP1 1060 aa11.05□□□□□ -0.64
SNRNP40-202ENST00000373720 COG6Q9Y2V7 657 aa11.05□□□□□ -0.64
SNRNP40-202ENST00000373720 IGSF1Q8N6C5 1336 aa11.05□□□□□ -0.64
SNRNP40-202ENST00000373720 CHL1O00533 1208 aa11.04□□□□□ -0.64
SNRNP40-202ENST00000373720 AMPHP49418 695 aa11.04□□□□□ -0.64
SNRNP40-202ENST00000373720 NLRP6P59044 892 aa11.04□□□□□ -0.64
SNRNP40-202ENST00000373720 GCC1Q96CN9 775 aa11.04□□□□□ -0.64
SNRNP40-202ENST00000373720 PHRF1Q9P1Y6 1649 aaKnown RBP11.04□□□□□ -0.64
SNRNP40-202ENST00000373720 TRIM27P14373 513 aa11.03□□□□□ -0.64
SNRNP40-202ENST00000373720 SULT6B1Q6IMI4 303 aa11.03□□□□□ -0.64
SNRNP40-202ENST00000373720 OTUD5Q96G74 571 aa11.03□□□□□ -0.64
SNRNP40-202ENST00000373720 PHACTR3Q96KR7 559 aa11.03□□□□□ -0.64
SNRNP40-202ENST00000373720 UPF2Q9HAU5 1272 aaKnown RBP11.03□□□□□ -0.64
SNRNP40-202ENST00000373720 MAP3K19Q56UN5 1328 aa11.03□□□□□ -0.64
SNRNP40-202ENST00000373720 LMTK3Q96Q04 1460 aa11.02□□□□□ -0.65
SNRNP40-202ENST00000373720 HMOX1P09601 288 aa11.02□□□□□ -0.65
SNRNP40-202ENST00000373720 RRS1Q15050 365 aaKnown RBP11.02□□□□□ -0.65
SNRNP40-202ENST00000373720 TWISTNBQ3B726 338 aaPredicted RBP11.02□□□□□ -0.65
SNRNP40-202ENST00000373720 PANK1Q8TE04 598 aa11.02□□□□□ -0.65
SNRNP40-202ENST00000373720 ZBTB40Q9NUA8 1239 aa11.02□□□□□ -0.65
SNRNP40-202ENST00000373720 NOB1Q9ULX3 412 aaKnown RBP11.02□□□□□ -0.65
SNRNP40-202ENST00000373720 NOP58Q9Y2X3 529 aaKnown RBP11.02□□□□□ -0.65
SNRNP40-202ENST00000373720 KIF1AQ12756 1690 aa11.01□□□□□ -0.65
SNRNP40-202ENST00000373720 PSME1Q06323 249 aa11.01□□□□□ -0.65
SNRNP40-202ENST00000373720 SMC5Q8IY18 1101 aa11.01□□□□□ -0.65
SNRNP40-202ENST00000373720 MRPL50Q8N5N7 158 aaKnown RBP11.01□□□□□ -0.65
SNRNP40-202ENST00000373720 ABTB2Q8N961 1025 aa11.01□□□□□ -0.65
SNRNP40-202ENST00000373720 IP6K1Q92551 441 aa11.01□□□□□ -0.65
SNRNP40-202ENST00000373720 TSR2Q969E8 191 aaKnown RBP11.01□□□□□ -0.65
SNRNP40-202ENST00000373720 C19orf44Q9H6X5 657 aa11.01□□□□□ -0.65
SNRNP40-202ENST00000373720 MBIPQ9NS73 344 aa11.01□□□□□ -0.65
SNRNP40-202ENST00000373720 USP35Q9P2H5 1018 aa11.01□□□□□ -0.65
SNRNP40-202ENST00000373720 POTEB2H3BUK9 544 aa11□□□□□ -0.65
SNRNP40-202ENST00000373720 HOXB7P09629 217 aa11□□□□□ -0.65
SNRNP40-202ENST00000373720 AMOTQ4VCS5 1084 aa11□□□□□ -0.65
SNRNP40-202ENST00000373720 IL27Q8NEV9 243 aa11□□□□□ -0.65
SNRNP40-202ENST00000373720 PIK3C2AO00443 1686 aa11□□□□□ -0.65
SNRNP40-202ENST00000373720 ABCC4O15439 1325 aa11□□□□□ -0.65
SNRNP40-202ENST00000373720 OVOS2A0A0G2JMS6 1433 aa11□□□□□ -0.65
SNRNP40-202ENST00000373720 ABCC6O95255 1503 aa10.99□□□□□ -0.65
SNRNP40-202ENST00000373720 HOXC9P31274 260 aa10.99□□□□□ -0.65
SNRNP40-202ENST00000373720 MNX1P50219 401 aaPredicted RBP10.99□□□□□ -0.65
SNRNP40-202ENST00000373720 HSP90AB2PQ58FF8 381 aa10.99□□□□□ -0.65
SNRNP40-202ENST00000373720 INTS3Q68E01 1043 aaKnown RBP10.99□□□□□ -0.65
SNRNP40-202ENST00000373720 ITPRIPQ8IWB1 547 aa10.99□□□□□ -0.65
SNRNP40-202ENST00000373720 DAXXQ9UER7 740 aaPredicted RBP10.99□□□□□ -0.65
SNRNP40-202ENST00000373720 NCKAP5LQ9HCH0 1330 aa10.99□□□□□ -0.65
SNRNP40-202ENST00000373720 GNAT3A8MTJ3 354 aa10.98□□□□□ -0.65
SNRNP40-202ENST00000373720 IGHDP01880 384 aa10.98□□□□□ -0.65
SNRNP40-202ENST00000373720 RPAP2Q8IXW5 612 aaPredicted RBP10.98□□□□□ -0.65
SNRNP40-202ENST00000373720 NCAPD2Q15021 1401 aa10.98□□□□□ -0.65
SNRNP40-202ENST00000373720 ZBTB7BO15156 539 aaPredicted RBP10.97□□□□□ -0.65
SNRNP40-202ENST00000373720 RLBP1P12271 317 aa10.97□□□□□ -0.65
SNRNP40-202ENST00000373720 HDAC5Q9UQL6 1122 aa10.97□□□□□ -0.65
SNRNP40-202ENST00000373720 PCDHB15Q9Y5E8 787 aa10.97□□□□□ -0.65
SNRNP40-202ENST00000373720 CRB1P82279 1406 aa10.97□□□□□ -0.65
SNRNP40-202ENST00000373720 PEAK1Q9H792 1746 aa10.96□□□□□ -0.65
SNRNP40-202ENST00000373720 CCT4P50991 539 aaKnown RBP10.96□□□□□ -0.65
SNRNP40-202ENST00000373720 C8orf34Q49A92 452 aa10.96□□□□□ -0.65
SNRNP40-202ENST00000373720 EYA1Q99502 592 aa10.96□□□□□ -0.65
SNRNP40-202ENST00000373720 DLG5Q8TDM6 1919 aa10.96□□□□□ -0.66
SNRNP40-202ENST00000373720 SLIT3O75094 1523 aa10.95□□□□□ -0.66
SNRNP40-202ENST00000373720 USP19O94966 1318 aa10.95□□□□□ -0.66
SNRNP40-202ENST00000373720 BECN1Q14457 450 aa10.95□□□□□ -0.66
SNRNP40-202ENST00000373720 TAF7Q15545 349 aaPredicted RBP10.95□□□□□ -0.66
SNRNP40-202ENST00000373720 CCDC30Q5VVM6 783 aa10.95□□□□□ -0.66
SNRNP40-202ENST00000373720 CADPS2Q86UW7 1296 aa10.95□□□□□ -0.66
SNRNP40-202ENST00000373720 TMEM57Q8N5G2 664 aa10.95□□□□□ -0.66
SNRNP40-202ENST00000373720 STK31Q9BXU1 1019 aa10.95□□□□□ -0.66
SNRNP40-202ENST00000373720 LAS1LQ9Y4W2 734 aaKnown RBP10.95□□□□□ -0.66
SNRNP40-202ENST00000373720 MAP3K5Q99683 1374 aa10.94□□□□□ -0.66
SNRNP40-202ENST00000373720 IBTKQ9P2D0 1353 aaPredicted RBP10.94□□□□□ -0.66
SNRNP40-202ENST00000373720 HMMRO75330 724 aa10.94□□□□□ -0.66
SNRNP40-202ENST00000373720 NUCB1Q02818 461 aa10.94□□□□□ -0.66
SNRNP40-202ENST00000373720 ESCO1Q5FWF5 840 aa10.94□□□□□ -0.66
SNRNP40-202ENST00000373720 BCL2L13Q9BXK5 485 aa10.94□□□□□ -0.66
SNRNP40-202ENST00000373720 CACNA1FO60840 1977 aa10.94□□□□□ -0.66
SNRNP40-202ENST00000373720 NFAT5O94916 1531 aa10.94□□□□□ -0.66
SNRNP40-202ENST00000373720 MSH6P52701 1360 aa10.93□□□□□ -0.66
SNRNP40-202ENST00000373720 MTHFSDQ2M296 383 aaKnown RBP10.93□□□□□ -0.66
SNRNP40-202ENST00000373720 PLEKHO1Q53GL0 409 aaPredicted RBP10.93□□□□□ -0.66
SNRNP40-202ENST00000373720 C14orf37Q86TY3 774 aa10.93□□□□□ -0.66
SNRNP40-202ENST00000373720 PROSER2Q86WR7 435 aaPredicted RBP10.93□□□□□ -0.66
SNRNP40-202ENST00000373720 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.93□□□□□ -0.66
SNRNP40-202ENST00000373720 PDZRN3Q9UPQ7 1066 aa10.93□□□□□ -0.66
SNRNP40-202ENST00000373720 RGPD8O14715 1765 aaPredicted RBP10.93□□□□□ -0.66
SNRNP40-202ENST00000373720 LRRC37A3O60309 1634 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms