RNA–Protein interactions for RNA: ENST00000368530.6

TPM3-210, Transcript of tropomyosin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TPM3, Length 1,523 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-210ENST00000368530 RNF39Q9H2S5 420 aa13.77□□□□□ -0.21
TPM3-210ENST00000368530 ZNF827Q17R98 1081 aa13.76□□□□□ -0.21
TPM3-210ENST00000368530 UTRNP46939 3433 aa13.76□□□□□ -0.21
TPM3-210ENST00000368530 TERF2IPQ9NYB0 399 aa13.75□□□□□ -0.21
TPM3-210ENST00000368530 USP47Q96K76 1375 aa13.75□□□□□ -0.21
TPM3-210ENST00000368530 LTN1O94822 1766 aa13.75□□□□□ -0.21
TPM3-210ENST00000368530 FBLN1P23142 703 aa13.74□□□□□ -0.21
TPM3-210ENST00000368530 AKT1S1Q96B36 256 aa13.74□□□□□ -0.21
TPM3-210ENST00000368530 WASHC2AQ641Q2 1341 aa13.73□□□□□ -0.21
TPM3-210ENST00000368530 BTAF1O14981 1849 aa13.73□□□□□ -0.21
TPM3-210ENST00000368530 MAP3K19Q56UN5 1328 aa13.73□□□□□ -0.21
TPM3-210ENST00000368530 DDX54Q8TDD1 881 aaKnown RBP13.72□□□□□ -0.21
TPM3-210ENST00000368530 ARXQ96QS3 562 aa13.72□□□□□ -0.21
TPM3-210ENST00000368530 MAP3K5Q99683 1374 aa13.71□□□□□ -0.21
TPM3-210ENST00000368530 ST20-MTHFSA0A0A6YYL1 179 aa13.71□□□□□ -0.21
TPM3-210ENST00000368530 HOXC9P31274 260 aa13.71□□□□□ -0.21
TPM3-210ENST00000368530 ZNF784Q8NCA9 323 aaPredicted RBP13.71□□□□□ -0.21
TPM3-210ENST00000368530 SLC27A3Q5K4L6 730 aa13.7□□□□□ -0.22
TPM3-210ENST00000368530 LTV1Q96GA3 475 aaPredicted RBP13.7□□□□□ -0.22
TPM3-210ENST00000368530 NSD2O96028 1365 aa13.7□□□□□ -0.22
TPM3-210ENST00000368530 PRIM1P49642 420 aaKnown RBP13.69□□□□□ -0.22
TPM3-210ENST00000368530 KCNQ4P56696 695 aa13.69□□□□□ -0.22
TPM3-210ENST00000368530 PNPLA7Q6ZV29 1317 aa13.69□□□□□ -0.22
TPM3-210ENST00000368530 SLC16A10Q8TF71 515 aa13.69□□□□□ -0.22
TPM3-210ENST00000368530 YTHDC1Q96MU7 727 aaKnown RBP13.69□□□□□ -0.22
TPM3-210ENST00000368530 ANKRD36BQ8N2N9 1353 aa13.68□□□□□ -0.22
TPM3-210ENST00000368530 FAM208AQ9UK61 1670 aaKnown RBP13.68□□□□□ -0.22
TPM3-210ENST00000368530 COG3Q96JB2 828 aa13.68□□□□□ -0.22
TPM3-210ENST00000368530 FYB1O15117 783 aa13.67□□□□□ -0.22
TPM3-210ENST00000368530 NBPF6Q5VWK0 638 aa13.67□□□□□ -0.22
TPM3-210ENST00000368530 ZCRB1Q8TBF4 217 aaKnown RBP13.67□□□□□ -0.22
TPM3-210ENST00000368530 NBPF4Q96M43 638 aa13.67□□□□□ -0.22
TPM3-210ENST00000368530 POLR3GLQ9BT43 218 aa13.67□□□□□ -0.22
TPM3-210ENST00000368530 MEGF6O75095 1541 aa13.67□□□□□ -0.22
TPM3-210ENST00000368530 COL24A1Q17RW2 1714 aa13.66□□□□□ -0.22
TPM3-210ENST00000368530 AMPHP49418 695 aa13.66□□□□□ -0.22
TPM3-210ENST00000368530 KIF7Q2M1P5 1343 aa13.66□□□□□ -0.22
TPM3-210ENST00000368530 SHANK3Q9BYB0 1731 aa13.65□□□□□ -0.22
TPM3-210ENST00000368530 RRS1Q15050 365 aaKnown RBP13.64□□□□□ -0.23
TPM3-210ENST00000368530 QSER1Q2KHR3 1735 aa13.64□□□□□ -0.23
TPM3-210ENST00000368530 SYTL4Q96C24 671 aaPredicted RBP13.64□□□□□ -0.23
TPM3-210ENST00000368530 SLC24A1O60721 1099 aa13.64□□□□□ -0.23
TPM3-210ENST00000368530 SAMD1Q6SPF0 538 aaPredicted RBP13.64□□□□□ -0.23
TPM3-210ENST00000368530 GGNBP2Q9H3C7 697 aa13.64□□□□□ -0.23
TPM3-210ENST00000368530 RGPD2P0DJD1 1756 aa13.63□□□□□ -0.23
TPM3-210ENST00000368530 RTL1A6NKG5 1358 aa13.63□□□□□ -0.23
TPM3-210ENST00000368530 ANP32CO43423 234 aa13.63□□□□□ -0.23
TPM3-210ENST00000368530 TFCP2L1Q9NZI6 479 aa13.63□□□□□ -0.23
TPM3-210ENST00000368530 LY75O60449 1722 aa13.63□□□□□ -0.23
TPM3-210ENST00000368530 USHBP1Q8N6Y0 703 aa13.62□□□□□ -0.23
TPM3-210ENST00000368530 NLGN2Q8NFZ4 835 aa13.62□□□□□ -0.23
TPM3-210ENST00000368530 KAT6BQ8WYB5 2073 aa13.62□□□□□ -0.23
TPM3-210ENST00000368530 DOT1LQ8TEK3 1739 aa13.61□□□□□ -0.23
TPM3-210ENST00000368530 CGNL1Q0VF96 1302 aa13.61□□□□□ -0.23
TPM3-210ENST00000368530 HSP90AB2PQ58FF8 381 aa13.61□□□□□ -0.23
TPM3-210ENST00000368530 COL23A1Q86Y22 540 aaPredicted RBP13.61□□□□□ -0.23
TPM3-210ENST00000368530 CCNL1Q9UK58 526 aaPredicted RBP13.61□□□□□ -0.23
TPM3-210ENST00000368530 TUBGCP6Q96RT7 1819 aa13.61□□□□□ -0.23
TPM3-210ENST00000368530 GOLGB1Q14789 3259 aaKnown RBP13.61□□□□□ -0.23
TPM3-210ENST00000368530 POLD1P28340 1107 aa13.6□□□□□ -0.23
TPM3-210ENST00000368530 GPR162Q16538 588 aa13.6□□□□□ -0.23
TPM3-210ENST00000368530 INSRP06213 1382 aa13.6□□□□□ -0.23
TPM3-210ENST00000368530 CARD14Q9BXL6 1004 aa13.59□□□□□ -0.23
TPM3-210ENST00000368530 CHD4Q14839 1912 aa13.59□□□□□ -0.23
TPM3-210ENST00000368530 CYP27B1O15528 508 aa13.59□□□□□ -0.23
TPM3-210ENST00000368530 ATXN8OSP0DMR3 200 aa13.59□□□□□ -0.23
TPM3-210ENST00000368530 C1QTNF8P60827 252 aa13.59□□□□□ -0.23
TPM3-210ENST00000368530 TMF1P82094 1093 aa13.59□□□□□ -0.23
TPM3-210ENST00000368530 RAPGEF4Q8WZA2 1011 aa13.58□□□□□ -0.24
TPM3-210ENST00000368530 YBX3P16989 372 aaKnown RBP eCLIP13.57□□□□□ -0.24
TPM3-210ENST00000368530 TATP17735 454 aaPredicted RBP13.57□□□□□ -0.24
TPM3-210ENST00000368530 C1QBPQ07021 282 aaKnown RBP13.57□□□□□ -0.24
TPM3-210ENST00000368530 KLHL34Q8N239 644 aa13.57□□□□□ -0.24
TPM3-210ENST00000368530 KIF24Q5T7B8 1368 aa13.57□□□□□ -0.24
TPM3-210ENST00000368530 AMIGO3Q86WK7 504 aa13.56□□□□□ -0.24
TPM3-210ENST00000368530 FLT4P35916 1363 aa13.56□□□□□ -0.24
TPM3-210ENST00000368530 EMILIN1Q9Y6C2 1016 aa13.55□□□□□ -0.24
TPM3-210ENST00000368530 PCDH11XQ9BZA7 1347 aa13.55□□□□□ -0.24
TPM3-210ENST00000368530 PCDH11YQ9BZA8 1340 aa13.55□□□□□ -0.24
TPM3-210ENST00000368530 NCAPD2Q15021 1401 aa13.55□□□□□ -0.24
TPM3-210ENST00000368530 NKX1-1Q15270 411 aaPredicted RBP13.54□□□□□ -0.24
TPM3-210ENST00000368530 MSL1Q68DK7 614 aa13.54□□□□□ -0.24
TPM3-210ENST00000368530 SMG6Q86US8 1419 aaKnown RBP13.54□□□□□ -0.24
TPM3-210ENST00000368530 PALLDQ8WX93 1383 aa13.54□□□□□ -0.24
TPM3-210ENST00000368530 CENPBP07199 599 aaPredicted RBP13.54□□□□□ -0.24
TPM3-210ENST00000368530 MPRIPQ6WCQ1 1025 aa13.54□□□□□ -0.24
TPM3-210ENST00000368530 CNGB1Q14028 1251 aaPredicted RBP13.53□□□□□ -0.24
TPM3-210ENST00000368530 PELP1Q8IZL8 1130 aaKnown RBP13.53□□□□□ -0.24
TPM3-210ENST00000368530 PIGBQ92521 554 aa13.53□□□□□ -0.24
TPM3-210ENST00000368530 SMIM5Q71RC9 77 aa13.52□□□□□ -0.25
TPM3-210ENST00000368530 TOGARAM1Q9Y4F4 1720 aa13.51□□□□□ -0.25
TPM3-210ENST00000368530 C5P01031 1676 aa13.51□□□□□ -0.25
TPM3-210ENST00000368530 SENP3-EIF4A1A0A087X0R7 540 aa13.51□□□□□ -0.25
TPM3-210ENST00000368530 CCER2I3L3R5 266 aa13.51□□□□□ -0.25
TPM3-210ENST00000368530 GRIN3BO60391 1043 aa13.51□□□□□ -0.25
TPM3-210ENST00000368530 CDCA8Q53HL2 280 aa13.51□□□□□ -0.25
TPM3-210ENST00000368530 FLAD1Q8NFF5 587 aa13.51□□□□□ -0.25
TPM3-210ENST00000368530 CD2APQ9Y5K6 639 aa13.51□□□□□ -0.25
TPM3-210ENST00000368530 NSD3Q9BZ95 1437 aa13.5□□□□□ -0.25
TPM3-210ENST00000368530 SMARCC1Q92922 1105 aaPredicted RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms